Commit Graph

11496 Commits

Author SHA1 Message Date
Jonathan Kim
98639557ac [svn-r18166] Purpose:
Take care of test case fail for h5repack from checkin (r18164)

Description:
    Previous checkin didn't allow h5diff to return succeed when a link's 
    target object doesn't exist. Changed it to succeed with warning.
    (Need to discuss related feature)

Tested on Jam
2010-01-25 19:20:16 -05:00
Jonathan Kim
985a261886 [svn-r18165] Purpose:
Add test cases for h5diff check-in (svn revision #18164).

Description:
    This test cases are for testing comparing through various link combinations
    relate to bugzilla report 1754.
    Also improved the test script to handle external link cases and
    simplified to use single line instead of double for each test cases. 

Tested on Jam
2010-01-25 17:02:35 -05:00
Jonathan Kim
79cd5838d1 [svn-r18164] Purpose:
Add a feature to compare through links. Relate to bugzilla report 1754.

Description:
    Currently, h5diff command only compares the name(path) of target object 
    not the actual data. With this feature, h5diff will go through the link(s) 
    and figure out the actual object at the end of the link and compare data 
    if exist. Internally we have hard-link, soft-link, external-link (as part 
    of user_defined-link). This feature will provide a user transparent 
    experience when comparing link objects as the user can specify any of 
    those 3 type of links to be compared in any combination.

Tested on Jam.
2010-01-25 16:43:48 -05:00
Quincey Koziol
bb25c85e79 [svn-r18159] Description:
Bring Coverity fixes from 1/22/10 session to trunk:

r18137:
219: Initialized hid_t to -1 and added close to error block.
189-191: Initialized line to NULL and added free line, and close fp to error block.

r18138:
19: Moved code block for printing that the number of enums is empty to the error block. (Would never have been executed otherwise)

r18139:
Fix coverity item 58.  Moved code related to displaying the parent of a repeated
group to the else(isRoot) section, as the root group has no parent.

r18140:
218: Initialized ret_value variable to -1. Because of throw Exception in default case of switch, the coverity problem would not have executed anyway. Good pratice is to initialize variables.

r18141:
Fix coverity item 92.  Added code to H5E_register_class to free cls in case of
an error.

r18142:
Fix coverity item 91.  Added code to H5E_create_msg to free msg in case of an
error.

r18143:
fixed issue 14,
took away "if" and used #ifndef_xxx.

r18144:
Fix coverity item 110.   Added code to H5Eget_minor to free msg_str in case of
an error.

r18145:
fixed coverity #18 removed "aligned", it is always NULL.

r18146:
Fix coverity item 109.   Added code to H5Eget_major to free msg_str in case of
an error.

r18147:
Fixed coverity #81 and #82, Check for bad pointer(s), but can't issue error, just leave

r18148:
Fix coverity item 97.   Added code to H5FD_fapl_open to free copied_driver_info
in case of an error.

r18149:
Fix coverity item 96.   Added code to H5FD_dxpl_open to free copied_driver_info
in case of an error.

r18150:
Fix Coverity issue #29: Protected cache_ptr dereferences with "if(pass)"
block

r18151:
Fix coverity item 93.   Added code to H5FL_fac_init to free factory and new_node
in case of an error.

r18152:
Fix coverity items 98 and 99.   Added code free allocated space in case of
error.

r18155:
124: Freed head pointer before jumping to done. There was no error handling block and normal exit used same path out.
120-123: Freed list of lists in error handling block.

r18156:
Fix coverity issues 179, 180, 181, 182, 183, 184, 186, 320, 407.  These were resource leak issues where allocated memory was not freed, generally in the case of tests that failed.

Tested on:
    Mac OS X/32 10.6.2 (amazon) debug & production
2010-01-23 02:00:00 -05:00
Quincey Koziol
fcc03a356b [svn-r18157] Description:
Bring back changes from Coverity session on 1/15/10:

r18111:
Fix Coverity issue #130: make certain that the cache gets freed on error.

r18112:
Fix Coverity issue #43 by making cache testing calls protected by 'pass'
variable.

r18113:
Fix Coverity issue #129 by releasing the cache on error.

r18115:
Coverity #45 fix: patched an error check in H5Screate_simple to prevent future dereferencing of a NULL point.
Added a verification in test/th5s.c.

r18116:
Fix Coverity issue #43 by releasing cache on error.

r18117:
Coverity #362,363 by adding HGOTO_DONE, freeing allocations and associated changes. REsolving coverity results #364-368, 369, 370-372, 377, 379, and 380.

r18118:
Fix Coverity issue #42: assert that cache & test specification pointer are
valid.

r18122:
Coverity #362,363 by adding HGOTO_DONE and freeing allocations. This also takes care of #357,358.

r18123:
Coverity #359-361, 373-376: Added HGOTO_DONE(FAIL) statement after checking allocation for NULL. Verified allocation is freed in done block.

r18128:
Fixed coverity issue #10 -- removed dead code.

Tested on:
    Mac OS X/32 10.6.2 (amazon)
2010-01-22 23:39:40 -05:00
Albert Cheng
2c872f398b [svn-r18154] ID 1753: added macro version of GetTestVerbosity.
GetTestVerbosity() is called many times during tests. Implemented a more
efficient macro version HDGetTestVerbosity.

Tested: Jam (serial and parallel).  Did not run h5committest since this
is a trival change that is portable, I am 99% sure.
2010-01-22 16:17:48 -05:00
Jonathan Kim
3c5dc1a808 [svn-r18134] Purpose:
Additional fix relted to the fix of bug1672.

Description:
    The fix of bug1672 caused some changes of output which required modifying
    some test cases.  After some discussion, restoring the changes of the test 
    cases was decided.  After many experiments for the solution, this fix was 
    made so the code which improved performance can stay.

Tested on Jam.
2010-01-21 15:01:42 -05:00
Jonathan Kim
e3ccf118bb [svn-r18131] Add test files for h5diff relate to r18129 commit. 2010-01-21 14:44:29 -05:00
Jonathan Kim
7ce1b99a7c [svn-r18129] Purpose:
Add test case relate to bug1749. Also corrected command echo lines which
    don't match with actual tests.

Tested on Jam.
2010-01-21 13:42:30 -05:00
Jonathan Kim
a988519ad0 [svn-r18126] Fix for bug1749: Incorrect code in diff() function for links compare 2010-01-20 16:03:22 -05:00
Raymond Lu
75f65c1583 [svn-r18125] I added the support of bitfield in H5Tget_native_type. Bitfield is similar to unsigned
integer.  I also added a test.

Tested on jam.  But I tested the same change for 1.8 with h5committest.
2010-01-20 15:41:23 -05:00
HDF Tester
1e25bc217f [svn-r18120] Snapshot version 1.9 release 58 2010-01-17 07:25:27 -05:00
Quincey Koziol
066294e321 [svn-r18109] Description:
Bring r18076-18096 from hdf5_1_8_coverity branch to trunk:

r18076:
Correct Coverity issue #1 by removing dead code

r18077:
Fix coverity item 142.  When an error occurred while copying a linked list in
H5S_point_copy, the library would not free the partially allocated list.  Added
code to free the list in this case.

r18078:
Correct Coverity issue #2 by removing impossible to reach code.

r18079:
Correct #3 by removing impossible to reach code.

r18080:
Correct Coverity issue #4 by removing impossible to reach code.

r18081:
fix coverity 26 , check (dblik->parent) before calls H5HF_man_iblock_detach().

r18082:
Fixed coverity issues 321 and 316.
    321: freed sm_buf in error handling to remove resource leak. 
        Also set sm_buf to NULL after other instances in which 
        it is freed to prevent double free.
    316: initialized nmembs to 0.

r18083:
Correct Coverity issue #6 by removing debugging knob from error reporting code.

r18084:
Fix coverity item 269 + others.  When a error occurred in a function using the
h5tools error framework, the "past_catch" variable would not be set to true
because that statement was before the label that goto jumped to.  This could
cause a failure in the cleanup section to go back to the start of the section,
freeing variables twice, etc.

Moved the label infront of past_catch=TRUE.

r18085:
fixed coverity #27, check if (heap) before use heap->obj....

r18086:
fixed coverity #28, check curr_span not null before use it at if(curr_span &&
    (io_bytes_left==0 || curr_seq>=maxseq))

r18087:
Correct Coverity issue #7 by cleaning up correctly on error

r18088:
Correct Coverity #8 by removing unchanged variable checking code.

r18089:
Correct Coverity issue #9 - remove impossible to reach code.

r18090:
Correct Coverity issue #11 by removing impossible to reach code.  Also clean
up some minor style issues.

r18091:
Fix coverity items 314 and 318.  Changed the improper assertion of the return
value of a library function to a check, and a return(void) on failure.

r18092:
Fix coverity item 70.  Changed the improper assertion of the return value of a
library function to a check, and a return(void) on failure.

r18093:
Correct Coverity issue #12 by removing dead code.

r18094:
Correct Coverity issue #16 by removing debugging code.

r18095:
Fixed coverity issue # 271.

Removed redundant checking and freeing of sm_buf1 and sm_buf2.

r18096:
Correct Coverity issue #17 by refactoring test to remove dead code.

    Also, removed previous "coverity" statements in comments, we'll review
those issues again and see if we can figure them out, now that we have more
experience with Coverity.

Tested on:
    Mac OS X/32 10.6.2 (amazon)
2010-01-14 22:05:59 -05:00
Albert Cheng
22da4232a4 [svn-r18107] bug 1673:
The mixed use of RUNTEST (original) and RUNTESTS (new) caused
confusion. E.g., the timings in test/ was still using the old
$RUNTEST.  It made more sense to use $RUNTEST which is used
by the dejagnu feature of automake.  So, I changed all
$RUNTEST or $RUNTESTS to $RUNEXEC.

config/commence.am & config/conclude.am are the two files
that got changes. Also fixed an error in test/Makefile.am.
The rest are changed by bin/reconfigure.

Tested: h5committested.
2010-01-12 18:58:30 -05:00
Allen Byrne
4e8e0a55a5 [svn-r18102] Added new H5HLint.c file. Corrected nodebug parameter to check. 2010-01-11 12:47:42 -05:00
HDF Tester
a65b70ccc7 [svn-r18100] Snapshot 2010-01-10 07:33:23 -05:00
Scot Breitenfeld
e166bc571d [svn-r18098] Description:
Changed the link type definitions to match the changes made in the source. 
-                                     !  H5L_LINK_SOFT_F      - Soft link
-                                     !  H5L_LINK_EXTERNAL_F  - External link
-                                     !  H5L_LINK_ERROR _F    - Error
+                                     !  H5L_TYPE_HARD_F      - Hard link
+                                     !  H5L_TYPE_SOFT_F      - Soft link
+                                     !  H5L_TYPE_EXTERNAL_F  - External link
+                                     !  H5L_TYPE_ERROR _F    - Error

Tested: jam (intel)
2010-01-08 16:25:29 -05:00
Scot Breitenfeld
d7f7da1630 [svn-r18097] Desciption:
Changed comments to reflect changes made to the link_type names to match those in C (bug 1720) from,
   H5L_LINK_HARD_F, H5L_LINK_SOFT_F,H5L_LINK_EXTERNAL_F,H5L_LINK_ERROR_F 
   to
   H5L_TYPE_HARD_F, H5L_TYPE_SOFT_F,H5L_TYPE_EXTERNAL_F,H5L_TYPE_ERROR_F
   MSB January 8, 2010.

Tested: No source changed.
2010-01-08 15:55:11 -05:00
Scot Breitenfeld
3d585fe0fe [svn-r18074] Description:
renamed the fortran constants H5L_LINK_*_F to H5L_TYPE_*_F to be consistent with C as noted in bug 1720
2010-01-08 10:05:07 -05:00
Quincey Koziol
86d40d2265 [svn-r18072] Description:
Bring r18071 from metadata journaling merge branch:

	Refactor local heap routines with changes from metadata journaling
branch, along with other misc. changes as the changes on the metadata journaling
branch are being converged with the current state of the trunk.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.6.2 (amazon) in debug mode
        Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
2010-01-07 17:45:21 -05:00
Larry Knox
27c3c4fc9a [svn-r18068] Add new file config/ibm-aix
Tested with chkmanifest on jam.
2010-01-05 22:27:19 -05:00
Albert Cheng
25b3ba2832 [svn-r18065] Purpose:
Port to AIX 6.1 for RS6000.  Should be the same as PowerPC based AIX.

Tested:
Blue-print of NCSA.
2010-01-04 21:04:39 -05:00
HDF Tester
a65f27f30f [svn-r18059] Snapshot 2010-01-03 07:39:26 -05:00
Albert Cheng
ac5945b412 [svn-r18057] Bug fix: 1192
Description:
Fixed exit code (sometimes return code in Main) to follow the HDF5 standards.

Tested:
Jam, both serial and parallel.
2009-12-26 05:12:49 -05:00
Albert Cheng
f40a245ce2 [svn-r18055] Bug fix: 1192
Description:
Fixed exit code (sometimes return code in Main) to follow the HDF5 standards.

Tested:
H5committested plus serial test in Jam.
2009-12-26 03:36:37 -05:00
Albert Cheng
840e04ab5f [svn-r18051] Bug fix: 1192
Description:
Some exit code (sometimes return code in Main) to follow the HDF5 standards.

Tested:
H5committested plus serial test in Jam.
2009-12-25 07:37:55 -05:00
HDF Tester
06ce6af638 [svn-r18047] Snapshot 2009-12-20 07:32:29 -05:00
Quincey Koziol
5fdc21c611 [svn-r18045] Description:
Slush changes back & forth between trunk, the merging branch and the
metadata journaling branch to level them out to a reasonably common set of code 
to work from for the next set of more significant changes.

Tested on:
        Mac OS X/32 10.6.2 (amazon) w/debug 
        (h5committest not required on this branch)
2009-12-19 19:44:12 -05:00
Quincey Koziol
e66ae8b671 [svn-r18039] Description:
Minor code cleanups, to align better w/ongoing metadata journaling
convergence.

Tested on:
	Mac OS X/32 10.6.2 (amazon) w/debug
	(too minor to require h5committest)
2009-12-19 02:19:07 -05:00
Quincey Koziol
ac446b6131 [svn-r18037] Description:
Bring r18035 from merge_metadata_journaling branch to trunk:

	More "brush clearing" convergence between metadata_journaling branch
and the trunk.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.6.2 (amazon) in debug mode
        Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
2009-12-19 00:40:15 -05:00
Quincey Koziol
de952f3647 [svn-r18035] Description:
More "brush clearing" convergence between metadata_journaling branch
and the trunk.

Tested on:
	Mac OS X/32 10.6.2 (amazon) debug & prod
	(h5committest not required on this branch)
2009-12-18 23:28:42 -05:00
Quincey Koziol
ee27c06366 [svn-r18033] Description:
Correct error in merging Coverity changes in r18011

Tested on:
	None - eyeballed only (very simple)
2009-12-18 23:12:33 -05:00
Quincey Koziol
1bc07c6aae [svn-r18031] Description:
Bring r18030 from merge_metadata_journaling branch to trunk:

	Bring "brush clearing" changes (whitespace & style issues, mostly) from
metadata_journaling branch to the "merging" branch, to converge the trunk and
the metadata_journaling branch.

	Also, some other minor cleanups along the way.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.6.2 (amazon) in debug mode
        Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
2009-12-17 17:21:08 -05:00
Quincey Koziol
77038a8175 [svn-r18030] Description:
Bring "brush clearing" changes (whitespace & style issues, mostly) from
metadata_journaling branch to the "merging" branch, to converge the trunk and
the metadata_journaling branch.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.6.2 (amazon) in debug mode
        Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
2009-12-17 10:07:35 -05:00
Raymond Lu
df2fef9759 [svn-r18028] On Boeing's OpenVMS, the value of EXIT_FAILURE is 268435458.
(The test is in test_exit_definitions.)  Their document says
it's supposed to be 2.  I commented it out for further
consideration.

Tested 1.8 branch on jam - simple change.
2009-12-16 16:17:04 -05:00
Raymond Lu
a428323f90 [svn-r18025] I removed a duplicated line from the read_old function. There were 2 identical calls to
the function H5Fopen.

Tested v1.8 branch on jam and the release 1.8.4 on OpenVMS.
2009-12-16 15:37:53 -05:00
Raymond Lu
93d36eecac [svn-r18022] I added tlinks to testhdf5.
Tested v1.8.4 on OpenVMS.
2009-12-16 15:23:42 -05:00
HDF Tester
dc974e3de2 [svn-r18012] Snapshot 2009-12-13 07:35:57 -05:00
Quincey Koziol
9b2c4bea02 [svn-r18011] Description:
Bring Coverity changes into the trunk: (also other minor cleanups)

r17991:
Fix Coverity items 175 and 176.  Fixed memory leak on error in print_enum in
H5LT.c.

r17993: (r17992 was not a Coverity change)
Close Coverity issue #206: inconsistently checking whether dt->shared was
non-NULL after H5T_alloc() returned a valid 'dt' value (which should guarantee
that dt->shared is valid).

r17994:
Fix Coverity item 149.  Fixed file handle leak on error in H5FD_stdio_open.

r17995:
Fixed Coverity issues 154 to 161:

 Added H5MP_close routine to error handling in the event *mp has not been
 freed before error.

r17996:
Close Coverity issue #126: potentially leaking merged_spans on routine failure.

r17997:
Fix Coverity items 147 and 148.  Fixed resource leaks on error in H5FDloc.c.

r17998:
Coverity issue 269-272:
    Added integer result variable to functions that could return negative.
        Assigned to unsigned after checking.
    Added H5E_BEGIN_TRY block around H5Tclose and removed H5E_THROW in the
        catch block.
    Checked buffer is NULL before free. Changed HGOTO_ERROR outside of the if
        block to H5E_THROW.

r17999:
Close Coverity issue #127: release temporary spans in more generic manner.
(Also add error checking to previous fix)

r18000:
Resolved Coverity issues 211 and 212 in H5T.c. Added comments to ignore
Coverity warning regarding not checking pointer for NULL, as we are using
an assert which catches the issue.

r18001:
Fix Coverity item 146.  Fixed resource leak on error in H5O_layout_copy.

r18002:
Fix Coverity items 143 and 145.  Fixed resource leaks on error in
H5D_compact_copy and H5D_contig_copy.

r18003:
Close Coverity issue #192: close file on error

r18004:
Fix Coverity issue #125: release temporary spans on error

r18005:
Resolved Coverity issues 5, 25, and 83 (in H5T.c):

    Separated embedded functions in order to check for NULL on return of
        H5I_object before passing into H5T_copy.

    Check to see if new_dt is NULL within error handling before
        dereferencing it.

    Ignore Coverity's dead code warnings as the checks that lead to the code
        are machine dependent.

r18006:
Coverity 63,70,73:  Checked result of function before assigning to an unsigned
variable.

r18007:
Coverity 78,79:   added continue statement if H5Pget_filter2 returns negative.

r18008:
Fixed Coverity issue # 138:

    Added support in error handling to free dst pointer (if allocated) on error.

r18009:
Whitespace & coding style cleanup
2009-12-13 00:28:30 -05:00
Raymond Lu
5d0fdb855d [svn-r17985] I put in the bug fix info for #1584. No test is needed. 2009-12-10 11:39:58 -05:00
Quincey Koziol
037dac6997 [svn-r17981] Description:
Abstract "print header" code into separate routine.

Tested on:
    Mac OS X/32 10.6.2 (amazon) w/debug
    (too minor to require h5committest)
2009-12-10 08:43:25 -05:00
Quincey Koziol
34d14bdf89 [svn-r17980] Description:
Bring Coverity changes into the trunk: (also other minor cleanups)

r17955:
Fix Coverity item 24.  Add missing error condition to
H5AC_ext_config_2_int_config.

r17956:
Fix Coverity item 24.  Improve error checking in H5A_compact_build_table_cb.

r17957:
Fix Coverity item 150.  Fix warning in H5A_compact_build_table_cb.

r17958:
Fix Coverity item 117.  Fix error handling in H5B_shared_new.

r17959:
Fix Coverity item 209.  Added an assertion for leaf->shared in
H5B2_cache_leaf_dest.

r17960:
Fix Coverity item 208.  Added an assertion for internal->shared in
H5B2_cache_internal_dest.

r17961:
Fix Coverity item 89.  Reworked the code to avoid array overrun in
H5C__autoadjust__ageout__insert_new_marker.

r17962:
Fix for coverity Resource_leak 195,203,204,205.

r17963:
Fix Coverity item 44.  Prevented potential NULL dereference in H5D_btree_debug.

r17964:
Fix Coverity issues #197, 198 & 199: memory not being released.  (Also
clean up other resource leaks in nearby and/or similar code).

r17965:
Fix Coverity issue #151: release resources on error

r17966:
Fix Coverity issue #187: Remove leftover code remnant from prior bugfix
which was causing resource leak of open files.

r17967:
Fixed Coverity issues # 193 & 194.  Removed unnecessary memory allocation and
added comparison of length of path parameter to the size of the destination
buffer in h5import.h/h5import.c.

r17968:
Fix Coverity item 144.  Fixed memory leak on error in H5D_chunk_copy.

r17969:
Fix for coverity Resource_leak #196.

r17970:
Coverity 167-173:
Initialized pointer of buffers.
In error handling, closed types and free memory.

Tested on:
    FreeBSD/32 6.3 (duty) in debug mode
    FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
    Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
        w/C++ & FORTRAN, w/threadsafe, in debug mode
    Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
        w/C++ & FORTRAN, in production mode
    Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
        w/szip filter, in production mode
    Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
    in production mode
    Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
    Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
    Mac OS X/32 10.6.2 (amazon) in debug mode
    Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
        in production mode
2009-12-10 07:36:56 -05:00
Quincey Koziol
adce7dfd84 [svn-r17978] Description:
Simplify checking for detecting variable-length strings.

Tested on:
    Mac OS X/32 10.6.2 (amazon) debug & production
    Too minor to require h5committest
2009-12-09 13:16:07 -05:00
Raymond Lu
58c8ac33a8 [svn-r17977] Bug fix for 1584. H5Tdetect_class said a VL string is a string type. But when it's in a
compound type, it says it's a VL type.  We want to tell user a VL string is a string.  But
internally we treat it as a VL type.  I added a flag as a parameter of H5T_detect_class.  
It tells whether the caller is the public function H5Tdetect_class.  I also added a 
detection for VL string in the private function for the compound case (or array or nested 
VL type).

Tested on jam and amani - I tested the same change for 1.8 with h5committest.
2009-12-09 12:06:02 -05:00
HDF Tester
94a00c768c [svn-r17973] Snapshot 2009-12-07 09:18:34 -05:00
Quincey Koziol
fda704377e [svn-r17971] Description:
Allow the core VFD to properly support opening backing store files through
symbolic links and have the external links in the file be treated in the same
way as for the sec2 driver.

Tested on:
    FreeBSD/32 6.3 (duty) in debug mode
    FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
    Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
        w/C++ & FORTRAN, w/threadsafe, in debug mode
    Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
        w/C++ & FORTRAN, in production mode
    Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
        w/szip filter, in production mode
    Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
        in production mode
    Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
    Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
    Mac OS X/32 10.6.2 (amazon) in debug mode
    Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
        in production mode
2009-12-06 21:51:54 -05:00
Quincey Koziol
fb1059e507 [svn-r17953] Description:
Bring Coverity changes into the trunk:

r17877:
Error 266: Uninitialized memspace set to -1. Changed malloc and free to HDmalloc and HDfree. Removed unused dtype var.

r17878:
Error 265: Uninitialized mem_space set to -1. Changed malloc and free to HDmalloc and HDfree. 
Error 267: Uninitialized smspace set to -1. Changed malloc and free to HDmalloc and HDfree.

r17879:
Error 242: Uninitialized aid set to -1. 
Error 243: Uninitialized sid set to -1. 
Uninitialized tid set to -1 for consistency

r17880:
Error 242: reinitialized aid to -1 after close to be ready for reuse. 
Error 243: reinitialized sid to -1 after close to be ready for reuse. 
reinitialized tid to -1 for consistency after close to be ready for reuse.

r17881:
use valgrind to check there is a memory leak. The fix is to free ptrstr in line 5838 at xml_dump_group() of h5dump.c after it is used. run the valgrind after the fix, no memory leak for that part of the code.

r17882:
Fix Coverity items 256 and 269.

r17883:
Error 222-230: initialized hid_t vars to -1 after close to be ready for reuse. 
Also added H5Tclose for tid in gent_bigdims

r17884:
Bug fix (Coverity run2, view 23, dead code)
(this is pair-program done by Albert, Elena and Larry).

Confirmed and fixed the deadcode in hyperslab read branch of function
diff_datasetid.
(Discovered other bad code that diff_datasetid() should be recoded.  
Bug 1693 is entered for this.)

r17906:
Fix Coverity item 260.

r17907:
262: Initialized hid_t's dtype, dtype_tmp and file to -1. Initialized H5T_t * dt to NULL.

r17908:
Fix Coverity item 261.

r17909:
Fix Coverity item 248.

r17910:
Revise fix for Coverity item 248.

r17911:
Resolved coverity issues #s 263, 162, 163, 164. All issues in dsets.c. Initialized fid and did hid_t's. filter_corrupt function was returning in the middle of an if statement, bypassing free calls. Updated error handling to free buffers and hid_t's appropriately.

r17912:
(done by Larry and Albert)
Cleanup Coverity view warnings (#231-241) about
using uninitialized variables.  Initialized all
of them.

r17913:
Resolved issue 251 and 264. Initialized tid2 to -1 and initialized buffers that were freed in case of an error.

r17914:
Resolved coverity issues 66, 220, and 221: 

66: Negative Return assignment ignored

220,221: Initialized hid_t's.

r17915:
Fix Coverity item 247.

r17916:
Fix Coverity item 246.

r17917:
Fix Coverity item 245.

r17918:
Fix Coverity item 244.

r17919:
Coverity Issue #84: Moved asserts in H5T_cmp to the top of the function, and converted them to HDassert. Coverity complaining about using potentially NULL pointer without checking it. Want to see if Coverity will accept Assertions as acceptable checking before using the value. 

Tested on:
    FreeBSD/32 6.3 (duty) in debug mode
    FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
    Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
        w/C++ & FORTRAN, w/threadsafe, in debug mode
    Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
        w/C++ & FORTRAN, in production mode
    Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
        w/szip filter, in production mode
    Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
        in production mode
    Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
    Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
    Mac OS X/32 10.6.2 (amazon) in debug mode
    Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
        in production mode
2009-12-03 14:11:29 -05:00
Quincey Koziol
94a17b8662 [svn-r17951] Description:
Skip symlink test for external links when not using the sec2 VFD.

Tested on:
    Mac OS X/32 (amazon) w/various VFDs
    (too minor for h5committest)
2009-12-03 10:39:14 -05:00
Scot Breitenfeld
96f8c1a6a8 [svn-r17949] Description:
Added comments to subroutine arguments.

Tested: jam
2009-12-02 15:45:54 -05:00
Allen Byrne
88a248f8d9 [svn-r17948] Added new H5SMmessage.c file to project files
Tested: Windows
2009-12-02 14:44:22 -05:00