Commit Graph

14386 Commits

Author SHA1 Message Date
Jerome Soumagne
8a1d1b24cf [svn-r26505] Merge r26435 from autotools_rework branch.
Remove DEFAULT_LIBS from configure.ac and irix6.x config file which
was using it.

Remove references to IRIX/irix* platform.
2015-03-20 14:04:30 -05:00
Jerome Soumagne
aad3aa7856 [svn-r26504] Merge r26434 from autotools_rework branch.
Fix heading info in configure.ac
2015-03-20 14:01:59 -05:00
Allen Byrne
851a0dcfaf [svn-r26497] minor corrections noticed in 1.8 should be in trunk as well 2015-03-20 10:40:30 -05:00
Quincey Koziol
9fb399b3d2 [svn-r26495] Description:
Bring r26258 from the autotools_rework branch to the trunk - remove
the LDOUBLE_TO_INTEGER_WORKS macro/define, which was addressing issues with
SGI systems that are no longer supported.

Tested on:
    Linux 2.6.x (jam) w/serial & parallel
    Daily tested on branch for >2 weeks
2015-03-19 17:22:06 -05:00
Quincey Koziol
5329a7d6f1 [svn-r26491] Description:
Bring r26257 from autotools_rework branch back to the trunk - removes
the LDOUBLE_TO_INTEGER_ACCURATE macro/define, which was addressing problems
with SGI systems and is no longer supported.

Tested on:
    Linux 2.6.x/32 (jam) w/serial & parallel
    Daily tested on branch for >2 weeks.
2015-03-19 16:52:50 -05:00
Allen Byrne
9501c16857 [svn-r26490] Remove unused defines 2015-03-19 16:37:04 -05:00
Scot Breitenfeld
d75a6763ec [svn-r26488] Updated developers notes due to the removal of COMMON and EQUIVALANCE and how everything is now put together.
Not tested, comments only.
2015-03-19 16:09:42 -05:00
Scot Breitenfeld
c26d21bb63 [svn-r26481] Removed compiler warnings. HDF5-239
Tested: h5committest.
2015-03-19 14:14:19 -05:00
Allen Byrne
db64e76056 [svn-r26480] Correct find package var name 2015-03-19 13:30:00 -05:00
Scot Breitenfeld
8f8cbb6225 [svn-r26479] Fix for: HDFFV-9162
h5pget_class_f should return hid_t for classtype

Also removed all left over C comment artifacts /* and */ in the Fortran comments.

Tested: h5committest
2015-03-19 12:11:47 -05:00
Scot Breitenfeld
c2c3294c21 [svn-r26477] Removed COMMON and EQUIVALENCE usage from Fortran Source.
Also removed disabling shared when building Fortran on the Mac. 
These fixes should fix all the building shared with Fortran problems. HDF5-247

Also fixes array bounds starting from zero in H5Pff.f90 routines.

Tested: h5committest
2015-03-19 10:38:27 -05:00
Allen Byrne
83beaf7e76 [svn-r26475] packaging cleanup and defaults 2015-03-18 16:17:59 -05:00
Allen Byrne
5c32711280 [svn-r26472] Remove duplicate src dir 2015-03-18 10:31:23 -05:00
Allen Byrne
e5d4692a97 [svn-r26465] Merge back from DB branch; cmake defaults and compressed examples 2015-03-17 13:59:19 -05:00
Allen Byrne
17f78f8469 [svn-r26463] static builds do not have dlls needed for the path 2015-03-17 09:11:50 -05:00
Binh-Minh Ribler
96c424d8bc [svn-r26462] Description:
Fixed typo that caused failure on Windows.
Platforms tested:
    Linux/32 2.6 (jam)
2015-03-16 18:23:16 -05:00
HDF Tester
ead7273c2c [svn-r26459] Snapshot version 1.9 release 215 2015-03-15 06:08:23 -05:00
Binh-Minh Ribler
3b90bca561 [svn-r26458] Purpose: Fix warnings HDFFV-8658
Description:
    Fixed many type conversion warnings and unused variables.
Platforms tested:
    Linux/64 (platypus)
    Linux/32 2.6 (jam)
    SunOS 5.11 (emu)
2015-03-15 01:49:20 -05:00
Binh-Minh Ribler
a382658282 [svn-r26457] Purpose: Fix warnings HDFFV-8658
Description:
    The following two constructors of classes: AbstractDs, IdComponent,
    H5Location, and H5Object are no longer appropriate after the data member
    "id" had been moved from IdComponent to the sub-classes.

    The copy constructors are noop and will be generated by the compilers if
    needed so they can be removed in 1.8.15 without effecting applications. The
    other constructors will be removed from 1.10 release, and then from 1.8 if
    their removal does not raise any problems in at least two 1.10 releases.

    <Classname>(const hid_t h5_id);
    <Classname>(const <Classname>& original);

    Deprecation warnings are added to each of these classes.

    The other classes are changed to call the default constructor instead of
    one of the constructors above.
Platforms tested:
    Linux/64 (platypus)
    Linux/32 2.6 (jam)
    SunOS 5.11 (emu)
2015-03-15 01:47:56 -05:00
Binh-Minh Ribler
66a7cc1289 [svn-r26456] Purpose: Fix warnings HDFFV-8658
Description:
    Fixed base classes that were in wrong order on the prototype lines and
    some misc. warnings.
Platforms tested:
    Linux/64 (platypus)
    Linux/32 2.6 (jam)
    SunOS 5.11 (emu)
2015-03-15 01:45:24 -05:00
Binh-Minh Ribler
f9fe5b4c32 [svn-r26455] Purpose: Fix warnings HDFFV-8658
Description:
    Parameter had the same name as the class' member's.  Replaced parameter
    with a different name.
Platforms tested:
    Linux/64 (platypus)
    Linux/32 2.6 (jam)
    SunOS 5.11 (emu)
2015-03-15 01:43:56 -05:00
Binh-Minh Ribler
447d7ebae9 [svn-r26454] Purpose: Fix warnings HDFFV-8658
Description:
    Missing initializing one of the base classes in multiple inheritance.
    Added CommonFG() to constructors' prototype.

Platforms tested:
    Linux/64 (platypus)
    Linux/32 2.6 (jam)
    SunOS 5.11 (emu)
2015-03-15 01:42:32 -05:00
Scot Breitenfeld
2d6a979b25 [svn-r26452] Fixed formatting of copyright. 2015-03-13 13:48:10 -05:00
Dana Robinson
7659506fa8 [svn-r26438] Fixed some double promotion warnings from gcc 4.9.2. Most were in
format strings.

Tested on: h5committest
2015-03-11 17:51:14 -05:00
Dana Robinson
88ac8e8929 [svn-r26428] Merge of r26424 from the autotools_rework branch.
Made the chkmanifest script a little more sh-friendly.

Tested: Manually on jam by modifying svn-controlled files
2015-03-11 01:40:54 -05:00
Dana Robinson
52607ae900 [svn-r26427] Revert of r26426
The repository wasn't clean when I made some changes so untested
code was committed.
2015-03-11 01:39:48 -05:00
Dana Robinson
3ed20376e0 [svn-r26426] Merge of r26424 from the autotools_rework branch.
Made the chkmanifest script a little more sh-friendly.

Tested: Manually on jam by modifying svn-controlled files
2015-03-11 01:35:51 -05:00
Scot Breitenfeld
04a3b2a458 [svn-r26417] Removed compiler warnings from HL. HDF5-237
Tested: h5committest
2015-03-10 14:02:41 -05:00
Allen Byrne
89da5458b6 [svn-r26415] Fix script mode 2015-03-10 11:43:37 -05:00
Dana Robinson
47bb12bc82 [svn-r26412] Merge of r26081-2, 26226, and 26399 from the autotools rework branch.
Various tweaks for autotools thread-safety and Pthreads support.

- Moved the check for pthread_attr_setscope() into the thread-safe
  checks section. Documented its necessity and added a cross-compiling
  option and helpful comment.

- Moved the high-level library checks up to the same place where
  Fortran and C++ are checked. This will make it easier to handle
  threadsafe/high-level combinations later.

- Also changed the default of --enable-pthread to 'check', which is
  the same as the old 'yes' behavior where we just check the standard
  locations. 'yes' and 'no' are still accepted, though 'no' will
  currently produce an error since the autotools only support Pthreads.

Fixes: HDFFV-9087

Tested on: h5committest
           jam (w/ threadsafe)
2015-03-09 22:35:13 -05:00
Dana Robinson
5aa5ed84da [svn-r26408] Missed an H5_HAVE_FILTER_SHUFFLE line.
Part of: HDFFV-9086

Tested on: jam (minor change)
2015-03-09 15:12:18 -05:00
Scot Breitenfeld
31ffa03914 [svn-r26405] Removed compiler warnings, hl/examples:
HDF5-237

tested: h5committest
2015-03-09 13:45:44 -05:00
Allen Byrne
64f65d96d9 [svn-r26403] changes to comments and test should use unsigned var. 2015-03-09 11:21:56 -05:00
Elena Pourmal
1f4f709e8c [svn-r26401] Fixed warnings in the C stubs for Fortran wrappers. See Crucible review HDF5-238.
Tested on platypus with gcc/gfortran 4.9.2, jam and emu with the default compilers.
2015-03-09 10:51:09 -05:00
Dana Robinson
2a4ea9b24e [svn-r26392] Reinstates r26327-8, which had been reverted due to failures on
Solaris and OS X.

Added public API functions that expose the C library's memory allocator
for use in filter functions that need to allocate or resize buffers.

Intended for use with filter plugins, particularly on Windows, where C
runtime (CRT) issues can cause problems.

Fixes: HDFFV-9100

Tested on: h5committest + OS X (quail) + Solaris (emu)
2015-03-08 19:41:54 -05:00
Larry Knox
63bd09ec8b [svn-r26389] Revision 26387 failed with configure option --with-default-api-version=v16.
Changed H5Dcreate() to H5Dcreate2 in test/trefer.c line 633.

Tested with h5committest and with --with-default-api-version=v16 on platypus.
2015-03-08 12:06:02 -05:00
Mohamad Chaarawi
89ffc9f2d7 [svn-r26387] warning fixes from Feb27. 2015-03-06 14:53:23 -05:00
Mike McGreevy
84f0d4735a [svn-r26382] Merge r26289 from autotools_rework branch to trunk:
Purpose:

    Fix HDFFV-9124 - Remove old libtool post-processing
    
Description:
 
    This revision removes some post-processing of the generated libtool
    script, which was added back in 2003 (see svn revisions 6285 and 6293)
    to address a deficiency in which the script failed to set the '$wl'
    variable for icc and pgcc compilers. Libtool has since fixed the issue,
    and the post-processing we've been running has essentially been a no-op
    for years, so it's safe for us to remove the post-processing snippet.
    
Tested:

    Jam using pgcc and icc compilers.
2015-03-06 11:16:04 -05:00
Allen Byrne
ec2e071c00 [svn-r26380] Recapture updated error files for h5dump tests 2015-03-06 08:53:42 -05:00
Jerome Soumagne
19fa03d5a8 [svn-r26375] Print number of times sigill_handler is called in H5detect.
Part of: HDFFV-8857
2015-03-05 17:46:07 -05:00
Jerome Soumagne
967c265541 [svn-r26374] Add CMake conversion test for H5_LONG_TO_LDOUBLE_SPECIAL and
H5_LDOUBLE_TO_LONG_SPECIAL (imported from configure.ac).

Fixes: HDFFV-8936

Tested on: ostrich
2015-03-05 17:26:08 -05:00
Scot Breitenfeld
ca0a4d24b6 [svn-r26373] Fix for HDFFV-7959:
H5Rdereference should check for default (HADDR_UNDEF) value and not continue processing and return so that ret value can be checked and handled properly 

Tested: jam (gnu)
2015-03-05 16:42:42 -05:00
Allen Byrne
61dcc807af [svn-r26367] HDFFV-8520: Add plugin control APIs. 2015-03-05 11:38:14 -05:00
Allen Byrne
63e3db6497 [svn-r26366] Update windows wix cpack process. 2015-03-05 11:36:39 -05:00
Allen Byrne
5be5a4d832 [svn-r26365] HDFFV-8520: Add plugin control APIs.
Update windows WiX packaging.

h5committested
2015-03-05 11:09:22 -05:00
Dana Robinson
da1bfda645 [svn-r26363] Partial revert of r26347.
Since off_t is exposed by the C API, the large file definitions MUST
be exposed so that client code matches the library.

These definitions have been switched back to AM_CPPFLAGS, which is
exported to h5cc, etc. The POSIX and GNU definitions changes from
r26347 have been left as using H5_CPPFLAGS, which is not sent to
h5cc as we don't want to inflict our needs on external users.

Fixes: HDFFV-9152

Tested on: h5committest
2015-03-04 17:01:37 -05:00
Dana Robinson
86d1ef2096 [svn-r26351] Adds warning prevention pragmas, etc. to flex- and bison-generated code.
Fixes: HDFFV-9149

Tested on: jam w/ gcc 4.1 and koala w/ gcc 4.9
2015-03-03 22:23:04 -05:00
Dana Robinson
6ee9ea656f [svn-r26348] Updates bin/chkmanifest to correctly handle the seven Subversion status
columns that are output by svn stat.

Previously, the script assumed that they would all be blank for newly-
added files. This is not always true when merging.

Part of: HDFFV-8895

Tested on: jam (bin/chkmanifest only)
2015-03-03 18:31:31 -05:00
Dana Robinson
f56cb6a8f0 [svn-r26347] Moves large file and POSIX/GNU defines from AM_CPPFLAGS to H5_CPPFLAGS,
which is where the rest of the #defines reside.

The key difference is that AM_CPPFLAGS is exported to h5cc. These #defines
are not necessary to consume the HDF5 API and it's bad form to inflict
our build configuration on users. In particular, the GNU/POSIX defines
could easily conflict with a user's.

Fixes: HDFFV-9152

Tested on: h5committest
2015-03-03 17:27:21 -05:00
Larry Knox
6c7aa17753 [svn-r26338] Remove references to vms and vms files to be updated by this script. VMS has been removed from HDF5 code.
Tested on jam.
2015-03-02 12:11:59 -05:00