Purpose:
Bug fix
Description:
Parallel builds were breaking in tools/lib
Solution:
talign didn't realize it depended on libh5tools.la because its
dependencies listed the full path (../../tools/lib/libh5tools.la).
Changed this, and made similar changes in a couple of other
directories.
This checkin should also add the --foreign flag to every Makefile.in
Platforms tested:
sleipnir (minor change)
New feature
Description:
Add basic code for new B-tree implementation. They don't do much yet,
aren't hooked up to anything yet and the format may change, but I'd like to
start getting them into the daily tests.
Platforms tested:
FreeBSD 4.11 (sleipnir) w/parallel
Too minor to require h5committest
Bug fix (#56)
Description:
h52gif creash for data > 1 byt
Solution:
check datatype and return with error message if not 1 byte int
Platforms tested:
shanti,verbena
Misc. update:
Bug fix
Description:
Found the permanant fix to automake/CVS dependency problem
Solution:
Added AM_MAINTAINER_MODE macro to configure.in.
Now automake will never try to regenerate Makefiles, Makefiles.in,
configure, H5config.h, etc. when they are out of date, nor will it
print any warnings.
Developers should be very very careful to use reconfigure script,
and can add --enable-maintainer-mode flag to configure on heping
to regenerate these files correctly.
Platforms tested:
heping sleipnir copper
Bug 181
Description:
Attributes written incorrectly.
Solution:
Do them right, as in H5IM.c
Platforms tested:
verbena, output checked on windows.
Misc. update:
Bug fix
Description:
Configuration files' timestamps were incorrect.
Solution:
Update Makefiles.in. Also added correct paths to autotools on heping,
so heping build should be able to re-generate configuration files even
if they are still broken.
Platforms tested:
sleipnir
DS new function
Description:
added the H5DSiterate_scales function with 2 operator functions and its tests
Solution:
Platforms tested:
linux
solaris
aix
windows
Misc. update:
Bug fix
Description:
Dependencies between configure files (aclocal, configure.in, configure,
Makefiles.am and .in) are still causing Makefiles to try to run autotools
during build.
Solution:
Committed all Makefiles.in to update their timestamps.
As a temporary measure, forcibly prevented automake from running
autotools during build by redefining the variables it uses.
Platforms tested:
sleipnir (No changes to Makefile content)
Bug fix
Description:
Different compilers use different flags to include Fortran module files
Solution:
Changed boilerplate to use configure variable rather than hardcoded -M flag.
Platforms tested:
sleipnir, sol, copper
Configuration feature
Description:
HDF5 now uses automake to generate Makefiles
Solution:
Makefile.in files are now generated from Makefile.am files.
To reconfigure (after chaning a Makefile.am or configure.in):
/bin/sh bin/reconfigure.sh
Platforms tested:
Many
added a first batch of dimension scales
fix some small bubgs in lite (a close function was not being called )
Description:
this batch contains the basic API functions described in the RFC and a minimal test file
Solution:
Platforms tested:
linux
solaris 64
AIX
windows
Misc. update:
changed the name of the hl table files back to H5TB.c and H5TB.h
this can be done now because the H5TB.c (threaded binary trees) file was removed from the hdf5 library
Description:
Solution:
Platforms tested:
linux
Misc. update:
Description: Removed PABLO from the source
Solution:
Platforms tested: arabica with 64-bit, copper with parallel,
heping with GNU C and C++ and PGI fortran (but
I disabled hl, there is some weird problem only
on heping: F9XMODFLAG is not
propagated to the Makefile files
Misc. update:
Description: Fortran module search directories included ../src and
../../fortran/src directories; this was defined in
acsite.m4 file in order for fortran and HL fortran tests
to compile. Those flags were included in h5fc and h5pfc scripts.
Solution: Removed those directories from acsite.m4 file and updated
Makefile.in files.
Platforms tested: sequential on arabica and parallel on copper
including HL Fortran
Misc. update:
Remove feature
Description:
Retire threaded, balanced binary tree code from HDF5 use. Requiescat in
pace...
Also, regenerate dependencies files.
Platforms tested:
FreeBSD 4.10 (sleipnir) w/parallel
Too minor to require full h5committesting (the code is already
disconnected from everything except its tests)
Bug Fix/Code Cleanup/Doc Cleanup/Optimization/Branch Sync :-)
Description:
Generally speaking, this is the "signed->unsigned" change to selections.
However, in the process of merging code back, things got stickier and stickier
until I ended up doing a big "sync the two branches up" operation. So... I
brought back all the "infrastructure" fixes from the development branch to the
release branch (which I think were actually making some improvement in
performance) as well as fixed several bugs which had been fixed in one branch,
but not the other.
I've also tagged the repository before making this checkin with the label
"before_signed_unsigned_changes".
Platforms tested:
FreeBSD 4.10 (sleipnir) w/parallel & fphdf5
FreeBSD 4.10 (sleipnir) w/threadsafe
FreeBSD 4.10 (sleipnir) w/backward compatibility
Solaris 2.7 (arabica) w/"purify options"
Solaris 2.8 (sol) w/FORTRAN & C++
AIX 5.x (copper) w/parallel & FORTRAN
IRIX64 6.5 (modi4) w/FORTRAN
Linux 2.4 (heping) w/FORTRAN & C++
Misc. update:
Bug fix
Description:
Add @COMMENCE@ to makefile, so that all our predefined macros are included,
which makes 'make distclean' work
Platforms tested:
FreeBSD 4.10 (sleipnir)
Too minor to require h5committest
add hl fortran
Description:
Solution:
Platforms tested:
linux (absfot and pgf90)
solaris (32 and 64 bit)
AIX
note : HP gives a compiling error , to be fixed in the future
Misc. update:
Description: Build failed in hl/test directory on OSF1 at PSC
Solution: It looks like that two extra blank lines after
CPPGLAGS definition caused the syntax error
I deleted the lines, and compilation went through
Platforms tested: lemiuex, heping
Misc. update:
Bug fix
Description:
Add dependency on the HDF5 library as well as the high-level library for
rebuilding tests.
Platforms tested:
FreeBSD 4.10 (sleipnir)
Too minor to require h5committest
bug fix
Description:
one header file that was removed from the repo was not removed from the makefile.in,
causing make install to fail
Solution:
removed the file from the public header file list to be installed
Platforms tested:
linux
Misc. update:
bug fix
Description:
the Makefile.in of the hl tests was not including a "srcdir" include path
the test table .c file was missing also the srcdir path
Solution:
add it
Platforms tested:
Misc. update:
bug fix
Description:
the Makefile.in had an instruction on the make install part that was not suposed to be there
Solution:
removed it
Platforms tested:
linux
aix
Misc. update:
insert high level library into main library
Description:
configure.in has a new entry (--enable-hl, disable-hl) it is on by default
the configure message prints info regarding if hl is enabled or not
the tree is
/hl
/hl/src
/hl/test
Solution:
Platforms tested:
linux
solaris
AIX
Misc. update:
Updated the copyright notice--mostly by rearranging
some text to make them consistent.
Solution:
Platforms tested:
"h5committested"--sol is down, so, no SUn test.
Misc. update:
Bug Fix
Description:
The SUBDIRS macro is now defined as "" in the config/commence.in
file. We shouldn't have definitions of this macro before the
inclusion of config/commence.in.
Solution:
Placed all definitions of SUBDIRS after config/commence.in inclusion.
Platforms tested:
Modi4 (Small fix yet again).
Misc. update:
Purpose:
user reported a bug on h5 to gif tool
Description:
h5 to gif did not read an HDF5 image correctly
Solution:
updated the program so that it reads the updated HDF5 image format to the latest specification
the debug version of MSVC was giving a failure on the write of the GIF file,
regarding the GIF file pointer
this write error is eliminated declaring that pointer a global variable
there is still an applicattion error on the exit of the program, only on the debug version of MSVC
Platforms tested:
w2000
Code cleanup
Description:
Windows is generating hundreds of warnings from some of the practices in
the library. Mostly, they are because size_t is 32-bit and hsize_t is
64-bit on Windows and we were carelessly casting the larger values down to
the smaller ones without checking for overflow.
Also, some other small code cleanups,etc.
Solution:
Re-worked some algorithms to eliminate the casts and also added more
overflow checking for assignments and function parameters which needed
casts.
Kent did most of the work, I just went over his changes and fit them into
the the library code a bit better.
Platforms tested:
FreeBSD 4.4 (hawkwind)
Code cleanup for better compatibility with C++ compilers
Description:
C++ compilers are choking on our C code, for various reasons:
we used our UNUSED macro incorrectly when referring to pointer types
we used various C++ keywords as variables, etc.
we incremented enum's with the ++ operator.
Solution:
Changed variables, etc.to avoid C++ keywords (new, class, typename, typeid,
template)
Fixed usage of UNUSED macro from this:
char UNUSED *c
to this:
char * UNUSED c
Switched the enums from x++ to x=x+1
Platforms tested:
FreeBSD 4.4 (hawkwind)
More code cleanups
Description:
Wrap up the code cleanups for changing the dataset transfer property lists
over to using the generic property list code.
Platforms tested:
IRIX64 6.5 (modi4)
Code cleanups, mostly..
Description:
Work on pacifying the SGI compiler to get the generic properties working
correctly with --enable-parallel and --enable-fortran. It's not quite
fixed yet, but I need to head home and these patches help... :-/
Platforms tested:
IRIX64 6.5 (modi4)
Purpose:
Reformatting
Description:
Reformatted the code so that it's much clearer and conforms to the
HDF5 coding standards. Changed the function headers to use the ANSI
style instead of the KnR style. Kept the use of typedef's such as
"unsigned char" being "BYTE" and so on since of of this code is
copied from some other place and that's the style they use...I didn't
want to break things.
Platforms tested:
It compiles fine on Linux, but there aren't any tests for this
package, so...
Purpose:
Bug fix (by Bob McGrath)
Description:
On Solaris platforms palette was not written to the HDF5 file
Solution:
'\0' character was written outside the GroupName array. Apparently on Solaris it destroyed the condition value that determined if the palette should be written to the file.
Platforms tested:
Not tested yet.
Purpose:
Bug fix
Description:
One of the function calls (H5Sget_simple_extent_dims) used parameter with
the wrong type. That caused compilation errors on T3E.
Solution:
Used NULL since that argument is optional and was never used.
Platforms tested:
T3E(mcurie) and IRIX64 (modi4)
Purpose:
Bug fix
Description:
Rushabh added new directory tools/gifconv to CVS. He also modified
MANIFEST, but bin/chkmanifest complains this file.
Solution:
I will try to delete gif.h and then to add it once more.
Purpose:
Adding new feature
Description:
Added gif2h5 and h52gif conversion utilities
Solution:
The utilites follow the framework built for the gif2hdf and hdf2gif
utilities for hdf4. The main files modified were those that read the
H5 file and those that write H5 file. In the future, if you wish to
continue with the framework and extend it to .png or some other fileformat
the main files to edit will be the gif reader and writer.
One point to note with h52gif. You have to specify the exact location of
the image and the palette that it links to. You can choose not to specify
a palette (uniform grayscale chosen in this case) but you must specify
image location. In the future, someone could edit the readhdf.c source
to enable the reader to parse the hdf file and select all images with
corresponding palettes.
Platforms tested:
modi4 , eirene , hawkwind , arabica , Ren (NT 4.0) , Personal box (win2k)
