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Author SHA1 Message Date
Neil Fortner
95983cbdfe [svn-r26680] Implement minor suggestions from 3/26/15 code review. 
Note make check still fails in h5dump test (unrelated to this checkin).

Tested: ummon
 2015-03-31 15:20:10 -05:00
Neil Fortner
904c84b2a2 [svn-r26668] Fix error in H5D__virtual_read/write that prevented short circuit. 
Fix off by 1 error in H5S__hyper_project_intersection algorithm.
Add many tests for fixed size hyperslab I/O.
Note make check still fails in h5dump test (unrelated to this checkin).

Tested: ummon
 2015-03-30 17:11:58 -05:00
Allen Byrne
e270981617 [svn-r26611] Remove complete section of VIRTUAL output. 2015-03-27 09:23:24 -05:00
Elena Pourmal
e26999516d [svn-r26609] Neil fixed a bug that caused a failure when a source file was closed. Removed comments from the 
example.
Tested on jam.
 2015-03-26 17:03:45 -05:00
Elena Pourmal
1180e6f96d [svn-r26570] Commented lineis that print extra "VIRTUAL" keyword and blank lines for demo on 3/25/2015. Allen will need to review it. 2015-03-24 23:08:59 -05:00
Elena Pourmal
1f9bf8d63b [svn-r26568] Simplified percival example. 2015-03-24 18:42:14 -05:00
Elena Pourmal
dd0e7540b6 [svn-r26567] h5dump was nopt displaying source selection correctly due to a type; fixed. 2015-03-24 18:31:00 -05:00
Neil Fortner
1583b1b729 [svn-r26566] Fix error in H5S__hyper_project_intersection algorithm. 
Note there are still some code coverage assertions in the selection matching
algorithm - if you hit these try taking them out.
Note make check still fails in h5dump test (unrelated to this checkin).

Tested: ummon
 2015-03-24 18:23:18 -05:00
Elena Pourmal
b8551d25cc [svn-r26565] Since fill values for VDS do not work at this point initialized the read buffer to show 
that VDS data is read correctly, leaving unmapped data untouched.

Tested on jam.
 2015-03-24 18:02:37 -05:00
Elena Pourmal
dd5a137083 [svn-r26564] Modified related files after adding example/h5_vds-percival.c 
Tested on jam.
 2015-03-24 17:56:24 -05:00
Elena Pourmal
1df431a1f4 [svn-r26563] Added new percival example to MANFEST. 2015-03-24 17:44:43 -05:00
Elena Pourmal
f7c38d0a2d [svn-r26562] Added examples for percival use case. 2015-03-24 17:43:43 -05:00
Neil Fortner
e0db90bcc4 [svn-r26559] Fix error in H5S_extent_copy (needs testing) - would not patch number of 
elements selected with "all" slections nor reset sharing state.
Fix error in H5S__hyper_project_intersection algorithm.
Note there are still some code coverage assertions in the selection matching
algorithm - if you hit these try taking them out.
Note make check still fails in h5dump test (unrelated to this checkin).

Tested: ummon
 2015-03-24 16:56:52 -05:00
Elena Pourmal
13299383ea [svn-r26557] Removed commented VDS read code. tested on jam. 2015-03-24 15:21:53 -05:00
Neil Fortner
43dec53436 [svn-r26482] Opening source files now reuses the flags from the virtual file. 
Added tests for I/O on virtual dataset with source datasets in unopened files.
Note there are still some code coverage assertions in the selection matching
algorithm - if you hit these try taking them out.
Note make check still fails in h5dump test (unrelated to this checkin).

Tested: ummon
 2015-03-19 15:04:36 -05:00
Neil Fortner
4cfe53284b [svn-r26476] Add support for I/O in all cases with fixed size datasets and no point 
selections.
Add source dataspace extent patching (should allow closing the source file).
Note fill values and various other features are not yet supported.
Note there are still some code coverage assertions in the selection matching
algorithm - if you hit these try taking them out.
Note make check still fails in h5dump test (unrelated to this checkin).

Tested: ummon
 2015-03-18 16:53:49 -05:00
Neil Fortner
424826d0dd [svn-r26469] INCOMPLETE, UNWORKING CODE 
Commit progress through 3/17/15
 2015-03-17 15:02:05 -05:00
Allen Byrne
66a9948e65 [svn-r26442] Removed blank line and fixed ALL output 2015-03-12 17:29:59 -05:00
Allen Byrne
4edde43ae5 [svn-r26440] Added new structure, removed ";", used static hyperslab arrays. 2015-03-12 16:22:48 -05:00
Allen Byrne
e1fed18477 [svn-r26431] Add new example (reorder to match closer to makefile) 2015-03-11 09:25:20 -05:00
Elena Pourmal
2c365915e1 [svn-r26421] This is Neils' change exposed when I ran bin/reconfigure for examples. 2015-03-10 17:16:48 -05:00
Elena Pourmal
ca2a0b80c5 [svn-r26420] Added new example for simple I/O. Modified other examples according to the suggestion in H5VDS-7 (see VDS-178) 2015-03-10 17:15:20 -05:00
Allen Byrne
92d7b82d61 [svn-r26418] Fix initial indent for selection_all 2015-03-10 15:53:57 -05:00
Neil Fortner
bfc69905ac [svn-r26411] Add support for I/O in very simple cases (virtual mapping and file space are 
both H5S_ALL).
Note make check  fails in h5dump test (unrelated to this checkin).

Tested: ummon
 2015-03-09 16:59:50 -05:00
Allen Byrne
9cdf806eec [svn-r26383] Add MAPPING to VDS output 2015-03-06 12:53:56 -05:00
Elena Pourmal
802fac804d [svn-r26376] Added new examples for fixed-size Excalibur and for Eiger use cases. Fixed several typos. 
Tested on jam.
 2015-03-05 18:04:57 -05:00
Allen Byrne
b3c3c8ea72 [svn-r26361] Added check for unlimited to count/block print selection 2015-03-04 14:14:50 -05:00
Elena Pourmal
e2175fd0ca [svn-r26360] Modified CMake files to accomodate new h5_vds-exc.c example. 2015-03-04 12:29:29 -05:00
Elena Pourmal
3c9c263e5a [svn-r26359] Added h5_vds-exc.c to misc. files and ran bin/reconfigure. 
Tested on jam.
 2015-03-04 12:26:33 -05:00
Elena Pourmal
026cf21de8 [svn-r26357] Added mapping example for the Excalibur detector use case. 2015-03-04 12:03:32 -05:00
Allen Byrne
1aa5cd4fa5 [svn-r26353] Add VDS selection defines for ALL and NONE 2015-03-04 09:08:58 -05:00
Allen Byrne
f1c4d0ff3f [svn-r26352] Update h5dump to latest BNF - reg vs irreg hyperslabs. 2015-03-04 08:34:24 -05:00
Neil Fortner
79771d3fac [svn-r26346] Add more test cases, refactor test code to reduce code duplication. Minor 
fixes in src.
Note make check still fails in h5ls test.

Tested: ummon
 2015-03-03 12:32:22 -05:00
Elena Pourmal
56f7406671 [svn-r26343] Improved output. 2015-03-02 16:34:39 -05:00
Elena Pourmal
a726992cd8 [svn-r26342] Added usage of the new H5S*_regular_hyperslab functions. 
Tested on jam.
 2015-03-02 16:32:27 -05:00
Allen Byrne
45df14138d [svn-r26318] Update virtual layout to latest changes 2015-02-26 10:59:15 -05:00
Neil Fortner
952d00e7f0 [svn-r26306] Merge r26296 through 26304 from trunk to vds branch. 
It should no longer be necessary to use --enable-using-memchecker
make check fails due to an issue with h5ls apparently unrelated to the merge

Tested: ummon
 2015-02-25 17:06:18 -05:00
Mohamad Chaarawi
c4044e0c85 [svn-r26303] remove files with .clog2 extension generated by MPE when doing make clean. 2015-02-25 13:48:31 -05:00
Quincey Koziol
3550004b20 [svn-r26302] Description: 
Revise dataspace encode/decode routines to make them work better with
future virtual dataset feature.

Tested on:
    Mac OSX/64 10.10.2 (amazon) w/serial
    (h5committest forthcoming)
 2015-02-25 13:03:52 -05:00
Quincey Koziol
0ce8fddc73 [svn-r26301] Description: 
Bring Neil's fix for error in H5S_extent_copy() back to the trunk.

Tested on:
    Mac OSX/64 10.10.2 (amazon) w/serial
    (h5committest forthcoming)
 2015-02-25 12:29:30 -05:00
Quincey Koziol
2dae075569 [svn-r26300] Description: 
Add H5Sis_regular_hyperslab() and H5Sget_regular_hyperslab() API routines,
along with tests.

Tested on:
    Mac OSX/64 10.10.2 (amazon) w/serial
    (h5committest forthcoming)
 2015-02-25 12:05:16 -05:00
Elena Pourmal
99a3f4d8d4 [svn-r26297] Changed example and h5dump according to suggestions at today's code review VDS-176. 
BNF has been updated too. Now h5dump displays VDS like this:

HDF5 "vds.h5" {
GROUP "/" {
   DATASET "VDS" {
      DATATYPE  H5T_STD_I32LE
      DATASPACE  SIMPLE { ( 4, 6 ) / ( 4, 6 ) }
      STORAGE_LAYOUT {
         VIRTUAL {
             HYPERSLAB { (0,0)-(0,5) };
             a.h5;
             A;
             ALL;
             HYPERSLAB { (1,0)-(1,5) };
             b.h5;
             B;
             ALL;
             HYPERSLAB { (2,0)-(2,5) };
             c.h5;
             C;
             ALL;
            }
         }
      }
      FILTERS {
.......
I just commented the code with "EIP" and didn't delete to simplify the review with Allen tomorrow.

Tested on jam
 2015-02-24 23:19:41 -05:00
Neil Fortner
2ca5b16a9f [svn-r26296] Merge r26050 through 26295 from trunk to vds branch. 
Tested: ummon
 2015-02-24 16:53:56 -05:00
Allen Byrne
3f72ec11cd [svn-r26295] add space before end bracket of selection 2015-02-24 15:39:08 -05:00
Scot Breitenfeld
48d9c30923 [svn-r26294] Fix for HDFFV-9132. 
tested: h5committest
 2015-02-24 15:30:07 -05:00
Neil Fortner
2811133914 [svn-r26293] Implement patching of virtual dataspace extent in mapping dataspaces when 
opening virtual dataset.  Add tests for this.

Tested: ummon
 2015-02-24 14:54:48 -05:00
Allen Byrne
80e77e7d77 [svn-r26290] Add H5S prefix to selection name 2015-02-23 16:52:03 -05:00
Allen Byrne
bc888966a9 [svn-r26288] remove extra set of brackets 2015-02-23 15:30:53 -05:00
Allen Byrne
b1251c915e [svn-r26287] Rename point and block str functions generically. 
Add info arg to print virtual selection function.
 2015-02-23 15:23:56 -05:00
Allen Byrne
a0ead57cad [svn-r26286] Print selection types - no values 2015-02-23 14:19:19 -05:00