Bug 1707 is that H5Eset_auto causes a seg fault when an application uses -DH5_USE_16_API with
the 1.8 library to compile.
I created a branch off the trunk called set_auto to continue working on the problem.
Tested on jam - backing out, simple.
through H5Eset_auto. I changed the union in the structure H5E_auto_t. Another change is to
make H5Eget_auto fail if H5Eset_auto is called to set the printing function. I'll write a
document for it.
Tested on heiwa, jam, and amani.
The property change in configure.in, config, and Makefile.am came from the merge of the 1.8
library change.
Whack a few more memory errors exposed by valgrind.
Make the debugging dump output a little bit prettier.
Tested on:
Mac OS X/32 10.6.4 (amazon) w/debug
(h5committest forthcoming)
Bring Coverity fixes back from branch to trunk:
r18336:
Fix coverity issues 275, 276, 277, 323, 432, 433, and 434
r18337:
Fix Coverity issue #106: release free space section node on error
r18338:
Fixed Coverity #94 - In H5P_register, new_class wasn't closed when there's an
error after it's created.
r18339:
Fix Coverity #185 - In test_conv_str_1, BUF wasn't freed when there's an error
in this function.
r18340:
Correct error in r18337 that wasn't releasing indirect fractal heap block
early enough.
r18341:
Close nodes if any failed in the middle of allocating new nodes. Coverity 140
and 141
r18342:
Correct [another] problem w/r18337.
r18343:
Fix coverity items 185, 20, and 21.
r18344:
Fix Coverity 213 - In H5FD_family_close, the double pointer file->memb was
dereferenced without NULL checking
(We believe).
r18345:
Fix Coverity issue # 210; removed NULL check after pointer dereferenced in
H5HFdblock.c. Also assigned NULL to pointer in H5Pint.c to fix segmentation
fault.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
Mac OS X/32 10.6.2 (amazon) in debug mode
Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
Bring Coverity fixes from branch to trunk:
r18282:
Fix Coverity issue #428 by wrapping testing calls with if(pass) {} block.
r18283:
Fix Coverity issue #425 by wrapping test calls in if(pass) {} block
r18284:
Issue 166: init_error() malloc'd 3 pointers in initialization and never freed
inc ase of errors. Init pointers to NULL, check allocation results and free
allocations in error block
r18285:
Fix Coverity issue #410 by wrapping test calls with if(pass) {} block.
r18286:
Issue 165: custom_print_cb() needed allocations freed in error block.
r18287:
Fix coverity issue # 409
Added if (pass) checks around calls to flush_cache. Additionally,
added a check for file_ptr = NULL after call to setup_cache.
r18288:
Fix coverity# 107 free fh in H5HF_close() correctly before exit the function
even when failure occurs.
r18289:
Fix Coverity issue #429: correct failure return values to match return type
from routine.
r18290:
Fix Coverity issue #103: release allocated indirect section on error
r18294:
Issue 153, 152: Check allocations and free allocations in error block. Also
cleaned up hid_t identifer that were opened in error block.
r18295:
Fix coverity# 101 free new_loc in H5HF_man_iter_start_entry() correctly before
exit the function even when failure occurs
r18296:
Fix coverity# 100 free down_loc in H5HF_man_iter_down() before exit the function
when failure occurs
r18297:
Fixed coverity issues 54, 55 and 216. Correctly handle the various ways that
allocation of attr_name can fail in test_attr_basic_write.
r18298:
Fix coverity# 119 free object in H5HG_read() before exit the function when
failure occurs
r18299:
Fix coverity issue #112:
Add cleanup during error handling of H5MP_create.
Tested on:
Mac OS X/32 10.6.2 (amazon) w/debug & production
Misc. Linux configurations (on original checkins)
Description:
When writing data to a dataset, the data transform was performed after type conversion.
This caused an error if the file type was non-native. This has been changed so data
transforms are always performed on the memory type.
Tested: jam, linew. smirom (h5committest)
Remove another call to H5E_clear_stack() from within the library.
Clean up lots of compiler warnings.
Tested on:
Mac OS X/32 10.5.6 (amazon)
(followup on other platforms forthcoming)
Remove trailing whitespace from C/C++ source files, with the following
script:
foreach f (*.[ch] *.cpp)
sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f
end
Tested on:
Mac OS X/32 10.5.5 (amazon)
No need for h5committest, just whitespace changes...
Rename new error handling API routines from H5E<foo>_stack() to
H5E<foo>2().
Tested on:
Mac OS X/32 10.4.9 (amazon)
FreeBSD/32 6.2 (duty)
FreeBSD/64 6.2 (liberty)
Tested platform:
Kagiso only since it is only a comment block change. If it works in one
machine, it should work in all, I hope. Still need to check the parallel
build on copper.
Finish new version of the I/O pipeline message, which is much smaller than
the previous version. This version is used with the "use the latest version
of the format" flag.
Closed several memory leaks/overruns (found with valgrind).
Also, lots of compiler & formatting cleanups.
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
Code cleanup
Description:
Fix a bunch of warnings flagged by Windows compilers.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
Code cleanup
Description:
Trim trailing whitespace, which is making 'diff'ing the two branches
difficult.
Solution:
Ran this script in each directory:
foreach f (*.[ch] *.cpp)
sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f
end
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
Code cleanup
Description:
Switch name & logic from H5_LLONG_TO_FP_CAST_BROKEN to
H5_LLONG_TO_FP_CAST_WORKS, to better match the rest of the library.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
Bug fix....
Description:
Despite passing all tests, the previous checkin had a copy/paste typo that
resulted in the tests being run under the wrong conditions.
Solution:
Fixed typo.
Platforms tested:
yet another minor change... copper only.
Misc. update:
bug fix (sorta)
Description:
Rename H5_LLONG_TO_FP_CAST_WORKS to H5_LLONG_TO_FP_CAST_BROKEN
Solution:
Since a test for H5_LLONG_TO_FP_CAST_WORKS is not present in the configure script,
the dtransform test would assume that this cast doesn't work and skip the test. Change the variable around
so that, by default, it is assumed a long long to double cast does work.
Platforms tested:
minor change: copper, sol
Misc. update:
Bug fix
Description:
The intel compiler on windows doesn't support long long to double conversion.
Solution:
Added a flag H5_LLONG_TO_FP_CAST_WORKS. When it is not defined, the data transform will issue
an error when someone tries to perform a transform from long long to double and the long long to double
dtransform test will be skipped.
Platforms tested:
heping, sol, copper
Misc. update:
Bug Fix/Code Cleanup/Doc Cleanup/Optimization/Branch Sync :-)
Description:
Generally speaking, this is the "signed->unsigned" change to selections.
However, in the process of merging code back, things got stickier and stickier
until I ended up doing a big "sync the two branches up" operation. So... I
brought back all the "infrastructure" fixes from the development branch to the
release branch (which I think were actually making some improvement in
performance) as well as fixed several bugs which had been fixed in one branch,
but not the other.
I've also tagged the repository before making this checkin with the label
"before_signed_unsigned_changes".
Platforms tested:
FreeBSD 4.10 (sleipnir) w/parallel & fphdf5
FreeBSD 4.10 (sleipnir) w/threadsafe
FreeBSD 4.10 (sleipnir) w/backward compatibility
Solaris 2.7 (arabica) w/"purify options"
Solaris 2.8 (sol) w/FORTRAN & C++
AIX 5.x (copper) w/parallel & FORTRAN
IRIX64 6.5 (modi4) w/FORTRAN
Linux 2.4 (heping) w/FORTRAN & C++
Misc. update:
Bug fix, sorta.
Description:
Revert change to H5Pget_data_transform() which changed len of buffer
returned to be inconsistent with H5Iget_name(), etc. We should discuss this
change and apply it to all the similar functions if we decide to change the
return value.
Platforms tested:
FreeBSD 4.10 (sleipnir)
Too minor to require h5committest
Code clean-up
Description:
Rewrote code to make it simpler.
Added more data type tests
Solution:
Simplified code a lot in preparation for addition of new test cases.
Platforms tested:
heping + sol + copper
Code cleanup
Description:
Change loops for comparing results to use 2-D array lookups, since that's
what we've really got and the older 1-D array lookups was making the PGI C
compiler whine about array bounds issues.
Platforms tested:
Linux 2.4 (heping) w/PGI C
Not relevent to other platforms, no h5committest
Bug fix.
Description:
dtransform test still failed on windows because it was attempting to create a
ullong dataset.
Solution:
Removed creation of ullong dataset as well if H5_ULLONG_TO_FP_CAST_WORKS was
not defined.
Platforms tested:
windows
Bug fix.
Description:
unsigned long long test fails on windows because windows cannot convert from
ullong to double
Solution:
Skip unsigned long long test if H5_ULLONG_TO_FP_CAST_WORKS is not defined.
Platforms tested:
eirene and will do windows test asap.
Added tests
Code cleanup
Description:
New tests added for new version of H5Pget_data_transform and additional tests
to make sure that error conditions are handled properly by both
H5Pset_data_transform and H5Pget_data_transform.
Also cleaned up code to make it more compact.
Platforms tested:
sol + eirene + copper
Misc. update:
Add code more code to test H5Pget_data_transform and H5Pset_data_transform
Description:
Added a test to verify that H5Pset_data_transform will correctly replace a
data transform with a new one and properly use the new transform on the data.
Added a test to verify that H5Pget_data_transform properly returns the
transform string.
Platforms tested:
sol + eirene + copper
Misc. update:
Skip test.
Description:
Known failure in char and schar types for dtransform test on AIX and SGI.
Solution:
Temporary skip this test until bug is fixed.
Platforms tested:
copper (minor change)
Bug fix.
Description:
If a subtest failed, the error would not propogate properly to the main
function, thereby resulting in a succesful run, even though the test failed.
Solution:
Fixed error return values. The dtransform test will now fail for real.
Platforms tested:
sol + eirene + copper
Added tests for most of the types that were added to the data transform code.
Further tests will also be added shortly.
Platforms tested:
sol + eirene
Misc. update:
Bug fix.
Description:
the Data transformation code that failed when a data transform property
for simple expression is fixed. Turned the tests back on.
Platforms tested:
Tested in copper (pp) where the failure appeared. Also in eirene
as double check. No h5committest as the change is trivial.
Bug fix.
Description:
THe trivial transform property list creation triggered a code
error. Skip these two tests temporary. Will fix it later.
Platforms tested:
Copper where it exposed the failures.
Misc. update:
Code cleanup
Description:
Clean up a bunch of warnings and bring new code better inline with current
library coding practice.
Platforms tested:
FreeBSD 4.10 (sleipnir) w/parallel
Too minor to require h5committest
Misc. update:
Code cleanup
Description:
Clean up almost all warnings from Windows builds.
Platforms tested:
FreeBSD 4.10 (sleipnir) w/parallel
Too minor to require h5committest
Bug fix.
Description:
Fixed handling of trivial data transform expressions (like 5/3 + 3) and some
data coversion fixes. Also added more tests to dtransform.c
Solution:
Added some more checks in the H5Z_xform_reduce_tree function to see if perhaps
the transform expression is complicated and is a non-trivial reduction.
Added tests for data conversion to dtransform as well as tests for a trivial
data transform expression.
Platforms tested:
h5committest'ed, except used arabica instead of sol and didn't do on copper
b/c no logon there. Problem noted with mtime test...doesn't appear to be
related to anything having to do with data transforms.
New Feature
Description:
Add the data transform function, H5Pset_transform().
Platforms tested:
"h5committested".
Copper was down. Ran parallel tests in sol instead.
Misc. update:
