Commit Graph

13608 Commits

Author SHA1 Message Date
Allen Byrne
e71411f9cf [svn-r23799] HDFFV-8455: moved h5dump in order of subdirs under tools to in front of h5import.
Tested local linux: h5dump executed before h5import
2013-06-20 13:10:07 -05:00
Allen Byrne
74384b3c19 [svn-r23798] HDFFV-8465: dtd reference incorrect. Fixed loading of xml files with respect to XSD file.
Tested: local linux
2013-06-20 12:39:49 -05:00
Allen Byrne
60cce86d0e [svn-r23796] remove commented line with c++ style 2013-06-20 10:06:14 -05:00
Allen Byrne
8ae76fa4b8 [svn-r23793] Correct logic for packaging cygwin release docs 2013-06-19 12:48:44 -05:00
Allen Byrne
8f9fb4a106 [svn-r23789] Remove COMPILE_FLAGS value - already set in X_FLAGS 2013-06-17 11:43:33 -05:00
Allen Byrne
47190b32e5 [svn-r23786] Remove COMPILE_FLAGS value - already set in X_FLAGS
Tested: windows
2013-06-17 11:28:47 -05:00
Allen Byrne
6c3284f8b3 [svn-r23784] Remove ignored FLAGS from MSVC variant of C compile/link. Incorrect copy from Fortran macro 2013-06-17 09:13:30 -05:00
HDF Tester
bdbd06d85d [svn-r23778] Snapshot version 1.9 release 154 2013-06-16 03:34:51 -05:00
Allen Byrne
e35d1e08f3 [svn-r23763] Fix missing command
Tested: local linux
2013-06-13 08:22:43 -05:00
Allen Byrne
93ec8e0821 [svn-r23762] Change warning flag groups to match list of gcc 4.7 from the config/gnu-flags file. 2013-06-12 15:55:38 -05:00
Allen Byrne
c7e81f4894 [svn-r23759] HDFFV-8451/8453: add options to enable more warning messages.
MS VS compiler levels added to warning options.
2013-06-12 10:28:26 -05:00
Allen Byrne
26ef64312a [svn-r23754] HDFFV-8451/8453: add options to enable more warning messages.
Tested: local linux
2013-06-11 14:05:36 -05:00
Allen Byrne
6ca79dd149 [svn-r23753] HDFFV-8461: Add Windows /MT support
This adds the UserMacros.cmake Windows /MT support file.

Tested: local linux
2013-06-11 14:03:34 -05:00
Allen Byrne
f4a3f6412b [svn-r23751] Enable all warnings (do not filter warnings) 2013-06-11 10:10:18 -05:00
Allen Byrne
8f0c245f72 [svn-r23748] HDFFV-8461: Add Windows /MT support
This adds the UserMacros.cmake support needed.
Correct Properties tag name
2013-06-10 15:39:00 -05:00
Allen Byrne
7e2733da8c [svn-r23746] Correct Windows setting after tests on windows 2013-06-10 14:23:27 -05:00
Allen Byrne
feb14ea872 [svn-r23745] HDFFV-8461: Add Windows /MT support
This adds the UserMacros.cmake support needed.
2013-06-10 12:46:48 -05:00
Allen Byrne
001f6a53bf [svn-r23744] HDFFV-8468: Remove conversion tests which generate access violations on Windows 8 64 2013-06-10 12:41:33 -05:00
HDF Tester
70d440330d [svn-r23741] Snapshot version 1.9 release 153 2013-06-09 03:39:22 -05:00
Allen Byrne
f0a9b781f3 [svn-r23740] HDFFV-8447: subsetting broke data output file option.
Reviewed in H5T-59, tested local linux
2013-06-07 13:39:54 -05:00
Allen Byrne
a6d8395557 [svn-r23737] HDFFV-8434: Use lowecase for whether in confiure.ac
Trival change
2013-06-05 13:26:35 -05:00
Allen Byrne
06d9eb3c63 [svn-r23736] HDFFV-8437: CMake so version numbering - changed order of values to match libtool values.
Tested: local linux
2013-06-05 13:14:45 -05:00
Allen Byrne
10108d7e30 [svn-r23735] HDFFV-8445: unregonized character warning solved by changing '\/' to '\\'.
Tested: Windows
2013-06-05 12:55:09 -05:00
Allen Byrne
fab67b684e [svn-r23733] HDFFV-8366: Patches tested by Larry using h5committest, it creates the intermediate testfiles folder first. 2013-06-05 08:36:45 -05:00
HDF Tester
177a90f97a [svn-r23718] Snapshot version 1.9 release 152 2013-05-26 03:56:00 -05:00
Quincey Koziol
33bd53a7eb [svn-r23717] Description:
Fix return value from FAIL to NULL, to match the routines type.

Tested on:
    Mac OSX/64 10.8.3 (amazon)
2013-05-23 13:24:57 -05:00
Joel Plutchak
8cc6ceb4e3 [svn-r23715] Bug Fix: HDFFV-8247
Description:
  Failure to write fill values to the user's buffer when reading unallocated
  chunks from datasets that have a fill value set to H5D_FILL_VALUE_DEFAULT.
  A consequence of this was the reporting of spurious data values in h5dump
  and h5diff output.

Solution:
  Added check for fill value of H5D_FILL_VALUE_DEFAULT whenever fill value 
  setting was checked to decide whether or not to fill. This effectively
  treats H5D_FILL_VALUE_DEFAULT the same as H5D_FILL_VALUE_USER rather than
  H5D_FILL_VALUE_UNDEFINED.

Tested:
   h5committest (platypus, ostrich, jam-pp, koala) ran successfully
   (fillval test was modified to reveal and check for this error)

Note: RELEASE.txt was previously changed to reflect this fix. This
checkin was of a cleaner version of the code, but mostly to get this
full log message entered.


-This line, and those below, will be ignored--

M    H5Dchunk.c
2013-05-22 15:52:34 -05:00
Quincey Koziol
424a41f878 [svn-r23713] Description:
Clean up warnings, switch library code to use Standard C/POSIX wrapper
macros, remove internal calls to API routines, update checkapi and checkposix
scripts.

Tested on:
    Mac OSX/64 10.8.3 (amazon) w/C++ & FORTRAN
    Big-Endian Linux/64 (ostrich)
2013-05-21 12:30:54 -05:00
Raymond Lu
7a3f473c04 [svn-r23710] I added H5Pencdec.c to make.com. I added
H5_HAVE_DIRENT_H
  H5_HAVE_LIBDL
  H5_HAVE_SETJMP
to h5pubconf.h.

Not tested yet.
2013-05-20 15:48:18 -05:00
HDF Tester
c09748b14e [svn-r23708] Snapshot version 1.9 release 151 2013-05-19 03:39:09 -05:00
Allen Byrne
b0235a2610 [svn-r23707] Vagrind memleak: bufferes only cleaned up if there was an error. 2013-05-15 08:38:41 -05:00
Quincey Koziol
7922ae388e [svn-r23698] Description:
Revert r23695, which breaks big-endian tests on ostrich, etc.  Will
investigate and submit correction later.

Tested on:
    BE & LE Linux systems (ostrich, koala, jam, emu)
2013-05-13 13:16:01 -05:00
Quincey Koziol
d38fe20df6 [svn-r23695] Description:
Clean up warnings in H5Tconv.c (down to _only_ 9000 lines of output now!)

    Merge changes from Coverity branch back to trunk:

r20684:
Fix for coverity bug #1721 which was due to the fix for coverity bug #943.

r20685:
Use HDstrncpy. --gh

r20761:
Purpose: Fix valgrind issues

Description:
Free image_data and data as appropriate in test_image.

r20762:
Purpose: Fix coverity issue 600

Description:
Add check for return value of H5O_close in H5Ocopy.  Also cleaned up various
warnings.

r20763:
Purpose: Fix valgrind issues with h5stat

Description:
Modified h5stat to free "iter" before exit, and free "hand" before exit if
parse_command_line exits directly.

r20764:
fixed coverity issues:
69, 327, 614, 684, 685, 696, 697, 1681, 967, 826, 660, 80

r20765:
Fixed coverity bug 668

Pulled x * y * z multiply out of malloc operand into a separate n_elements variable to quiet integer overflow warning.

No actual integer overflow tests are performed since it's just a test program but I did add a check that n_elements is >= 1.

I also changed an error condition from doing its own close and returning -1 to "goto out;" like the rest of the program.

r20766:
Fixed coverity bug 667

Pulled x * y * z multiply out of malloc operand into a separate n_elements variable to quiet integer overflow warning.

No actual integer overflow tests are performed since it's just a test program.


Tested on:
    Mac OSX/64 10.8.3 (amazon) w/C++ & FORTRAN
    (h5committest upcoming)
2013-05-11 10:59:48 -05:00
Allen Byrne
5ecebe5b9b [svn-r23692] Remove INSTALL_VMS file.
Added if block around INSTALL files
2013-05-09 13:07:36 -05:00
Allen Byrne
fb396557fc [svn-r23691] Fix valgrind leak by closing fapl
Tested: local linux
2013-05-09 09:56:18 -05:00
Raymond Lu
90ccb5c3c3 [svn-r23685] Issue 8380 H5Zunregister caused seg fault. I simplied the iteration process over datasets, groups, and files as Quincey suggested. I also removed H5I_search that I introduced in last commit but didn't actually used it.
Tested on jam and koala - simple change.
2013-05-08 11:36:58 -05:00
Raymond Lu
8ec42ced80 [svn-r23675] Issue 8380 - H5Zunregister caused seg fault. This is the followup commit. Quincey
reviewed my previous commit and suggested me to use H5I_iterate to iterate through
all opened objects in H5Z_unregister.  I changed it in this commit.

Tested with h5committest.
2013-05-06 15:51:26 -05:00
HDF Tester
8f3aee85de [svn-r23669] Snapshot version 1.9 release 150 2013-05-05 03:32:05 -05:00
Joel Plutchak
99e1300a0f [svn-r23668] Added fix report for Jira issue HDFFV-8247, and removed it from
the "Known Problem" section.
2013-05-03 14:23:50 -05:00
Joel Plutchak
30f904dbe9 [svn-r23667] Removed H5E call. 2013-05-03 10:39:44 -05:00
Joel Plutchak
62f6b579d0 [svn-r23666] Fix for fill value problem for chunked files with mixed allocated/unallocated chunks. 2013-05-02 14:20:14 -05:00
Joel Plutchak
7d205bba0a [svn-r23665] Added test cases to expose potential fill value issues. 2013-05-02 14:19:06 -05:00
Albert Cheng
7d0aded13a [svn-r23662] Bug fix: HDFFV-8236
Some files are not distributed when release tarball is created by bin/release
according to MANIFEST.  But --enable-build-all compiles them in test/.

Solution:
Distributed those missing files for now.  Need to resolve if these files
should be distributed or not.  And if not, fix --enable-build-all NOT to
compile them.

Tested: use bin/release to generate the tarball and run --enable-build-all with
it. Error is gone and all passed.
2013-05-02 07:50:08 -05:00
Raymond Lu
bada3f7a86 [svn-r23656] Issue 8380 H5Zunregister caused seg fault: I added some protection measures:
1. If any opened object uses the filter, let it fail.
  2. Flush all opened files to push any cached data to files.

Tested with h5committest.
2013-04-29 14:23:04 -05:00
Allen Byrne
029e143471 [svn-r23651] Add MPI configuration information to includes and libs 2013-04-29 10:12:47 -05:00
Allen Byrne
3c79c08dbe [svn-r23649] Correct file reference in pack list
Rename and update CMake docs.
2013-04-29 09:18:34 -05:00
HDF Tester
1f09e9d19e [svn-r23642] Snapshot version 1.9 release 149 2013-04-28 03:37:26 -05:00
Albert Cheng
613c5e8046 [svn-r23638] Removed INSTALL_MinGW because,
1. The file states that:
NOTE:
We are no longer actively supporting MinGW as of 1.8.5.
2. It is not tested for v1.8.11.
3. If we ever supports it again, it can be "restored" from previous
release (e.g. v1.8.10).)
2013-04-26 18:02:57 -05:00
Albert Cheng
357424423c [svn-r23618] Bug fix: HDFFV-8390
Threadsafe works in v1.8.10 release. But it fails v1.8.11-pre1 tarball in
configure stage now. There was a typo in the configure around the checking
of pthread library.  Fixed it.

Tested: AIX and also h5committested.
2013-04-24 13:27:04 -05:00
Allen Byrne
ed5a2bc1c1 [svn-r23614] Remove subfolders for includes 2013-04-23 12:50:15 -05:00