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2666 Commits

Author SHA1 Message Date
Neil Fortner
5065c139c7 [svn-r27397] Merge revisions 27255 through 27393 from trunk to vds branch. 
Tested: ummon
 2015-07-15 15:33:50 -05:00
Scot Breitenfeld
2c897f41c0 [svn-r27378] svn merge -r27326:27377 https://svn.hdfgroup.uiuc.edu/hdf5/trunk 2015-07-14 10:34:45 -05:00
Allen Byrne
8bbe712961 [svn-r27364] Add Mac Framework support 2015-07-09 11:56:16 -05:00
Scot Breitenfeld
985e8d02a4 [svn-r27327] svn merge -r27208:27326 https://svn.hdfgroup.uiuc.edu/hdf5/trunk 2015-07-02 14:12:03 -05:00
Allen Byrne
1ed71c5037 [svn-r27324] Remove extra character on end of file name 2015-07-02 12:13:55 -05:00
Allen Byrne
364c193744 [svn-r27321] Fixed VDS test framework to check for zlib, 
and fix file copy list paths
 2015-07-02 09:11:55 -05:00
Allen Byrne
5af1fa67c4 [svn-r27300] Add h5repack and h5diff VDS tests 2015-06-30 12:58:57 -05:00
Allen Byrne
86d1946424 [svn-r27267] Combine float checks and int checks to eliminate possible conflicts 2015-06-22 13:49:46 -05:00
Allen Byrne
224c6cbe59 [svn-r27266] Change tests to use simple mode - eliminates native type use. 
Combine float checks and int checks to eliminate possible conflicts
 2015-06-22 13:47:43 -05:00
Allen Byrne
5a1be8e235 [svn-r27265] corrected test params 2015-06-22 11:03:14 -05:00
Allen Byrne
48e1bbb0f8 [svn-r27252] Fix whitespace 2015-06-19 10:57:38 -05:00
Allen Byrne
7fdb38eb6f [svn-r27239] Add function prototype for local function 2015-06-18 08:52:52 -05:00
Allen Byrne
cf7c5123cb [svn-r27238] Add function prototype for local function 2015-06-18 08:52:35 -05:00
Allen Byrne
4878a00ac2 [svn-r27236] The vds h5diff files 2015-06-17 15:28:05 -05:00
Allen Byrne
202fd2b6c1 [svn-r27235] Add vds h5diff tests 2015-06-17 15:22:25 -05:00
Allen Byrne
bea58674e9 [svn-r27234] Add layout test from virtual to Contiguous and Compact generated files to clearall 2015-06-17 15:05:00 -05:00
Allen Byrne
5ae9dc0369 [svn-r27233] Add layout test from virtual to Contiguous and Compact 2015-06-17 14:37:40 -05:00
Allen Byrne
5b4b4650c6 [svn-r27229] remove copy-paste errors from list 2015-06-17 13:20:39 -05:00
Dana Robinson
fb27787c2a [svn-r27222] Merge of r27035-27221 from the trunk. 
Tested on 64-bit linux VM:
    Serial: C++ and Fortran 2003
    Parallel: Fortran
 2015-06-17 06:48:34 -05:00
Scot Breitenfeld
85bcb77904 [svn-r27221] Reworked Fortran autools REAL KIND detection. 2015-06-16 16:47:00 -05:00
Allen Byrne
616106ade3 [svn-r27219] Add h5dump and h5 ls VDS test scripts to autools configure 2015-06-16 16:25:03 -05:00
Allen Byrne
3d5c3851a3 [svn-r27218] Add VDS tests to h5ls 2015-06-16 16:15:55 -05:00
Scot Breitenfeld
48086667b5 [svn-r27209] svn merge -r27186:27208 https://svn.hdfgroup.uiuc.edu/hdf5/trunk 2015-06-16 08:49:28 -05:00
Allen Byrne
d92c74b4aa [svn-r27196] Move pbbits file to subfolder 2015-06-12 16:33:27 -05:00
Allen Byrne
78e128c544 [svn-r27195] Add h5dump cmake tests and files. 
Add tools gen cmake files
move testfiles for pbits to subdir as well as vds

Tested: local linux
 2015-06-12 16:29:20 -05:00
Dana Robinson
aa4e3e3985 [svn-r27191] Merged r26781 to r27185 from trunk 
Tested on: 64-bit Ubuntu Linux VM w/ gcc 4.8.2
    (C++ and Fortran 2003 also tested)
 2015-06-11 14:18:52 -05:00
Scot Breitenfeld
6c4e3759f5 [svn-r27187] svn merge -r27135:27186 https://svn.hdfgroup.uiuc.edu/hdf5/trunk 2015-06-10 14:23:09 -05:00
Scot Breitenfeld
f2d14c76b8 [svn-r27186] added fix for jam with promoted reals and integers 2015-06-10 14:15:08 -05:00
Mohamad Chaarawi
b9f2a18b5a [svn-r27185] fix more instances where both mpi is_initialized and is_finalized need to be checked before making any MPI calls. 
tested with h5committest.
 2015-06-10 12:57:32 -05:00
Scot Breitenfeld
62401ac7c6 [svn-r27167] more DT fixes 2015-06-09 12:05:09 -05:00
Scot Breitenfeld
32703c9fc5 [svn-r27164] various bug fixes for DT 2015-06-08 16:13:15 -05:00
Dana Robinson
6c81df0a27 [svn-r27161] Added makefiles to tools/misc/vds to build the generators. 
Tested on: jam
 2015-06-08 04:56:49 -05:00
Dana Robinson
a6442037e4 [svn-r27160] Added VDS generator files. 
The Makefiles have not been updated so they don't compile yet.
 2015-06-08 04:10:50 -05:00
Scot Breitenfeld
8641814c4e [svn-r27154] fixed issue with mis-matching long double between Fortran and C 2015-06-05 17:17:13 -05:00
Scot Breitenfeld
043173a689 [svn-r27151] fixed __float128 errors 2015-06-04 15:26:02 -05:00
Dana Robinson
fad77fd2c2 [svn-r27150] Added an empty VDS testfile generator to tools/misc directory. 
test/Makefile.in was updated due to changes in the Makefile.am
file that missed a reconfigure. The changes just added a few
VDS test files to the deletion list.

Note that there are trace issues with a new VDS struct that
show up when running bin/reconfigure. I reverted these for
fixing at a future date.

Tested on: jam
 2015-06-04 14:46:50 -05:00
Scot Breitenfeld
4d500d4902 [svn-r27140] fixed interger*16 support 2015-06-03 09:13:58 -05:00
Scot Breitenfeld
f486fe1a49 [svn-r27137] svn merge -r27115:27135 https://svn.hdfgroup.uiuc.edu/hdf5/trunk 2015-06-02 09:46:51 -05:00
Mohamad Chaarawi
fc45d5fcb0 [svn-r27133] - Add a new attribute function characterstic for format: 
* H5_ATTR_FORMAT(X,Y,Z)  __attribute__((format(X, Y, Z)))
- Rename UNUSED attribute characterstic to H5_ATTR_UNUSED.
- Rename NORETURN attribute characterstic to H5_ATTR_NORETURN

tested with h5committest.
 2015-06-01 14:38:09 -05:00
Scot Breitenfeld
52e5579fba [svn-r27122] removed dependency on generatored fortran source code 2015-05-28 11:53:15 -05:00
Scot Breitenfeld
b1cf507c6d [svn-r27116] svn merge -r26937:27115 https://svn.hdfgroup.uiuc.edu/hdf5/trunk 2015-05-27 17:12:43 -05:00
Scot Breitenfeld
244784ab2c [svn-r27115] Moved testing KINDs and SIZEOFs to configure. 2015-05-27 17:07:18 -05:00
Mohamad Chaarawi
cea93c4a37 [svn-r27111] move undef of __attribute__ back to private and remove its usage from public routines. 2015-05-26 09:23:27 -05:00
Neil Fortner
948722cde8 [svn-r27103] Merge revisions 26780 through 27102 from trunk to vds branch. 
Tested: ummon
 2015-05-21 12:13:16 -05:00
Quincey Koziol
775a54c19a [svn-r27071] Description: 
Clean up H5B2 interface, to align w/v3 metadata cache changes

Tested on:
    MacOSX/64 10.10.3 (amazon) w/serial & parallel
    Linux 2.6.* (jam) w/serial & parallel
 2015-05-14 20:46:00 -05:00
Quincey Koziol
7e231953a2 [svn-r27058] Description: 
Convert internal chunk structures to use 'scaled' coordinates instead of
absolute coordinates.

Tested on:
    Mac OSX/64 10.10.3 (amazon) w/parallel & serial
    Linux 2.6.x/32 (jam) w/parallel & serial
    Linux 2.6.x/64 (koala) w/serial
 2015-05-13 16:30:24 -05:00
Dana Robinson
984ecb72c2 [svn-r27038] Merge of r26393-27031 from the trunk. 
Tested on 64-bit linux VM w/ C++ and Fortran 2003
 2015-05-07 16:05:14 -05:00
Allen Byrne
1c30759aae [svn-r26959] Fixed ERTERN print format and remove "Files" from virtual. 2015-04-28 16:46:56 -05:00
Allen Byrne
6709dd28f2 [svn-r26953] Remove src temporary debug build props. 
Move TOOLS option up before usage.
 2015-04-28 16:32:17 -05:00
Scot Breitenfeld
241bbc426c [svn-r26938] svn merge -r26910:26937 https://svn.hdfgroup.uiuc.edu/hdf5/trunk 2015-04-28 10:19:24 -05:00
Allen Byrne
4e50ee0096 [svn-r26936] Incorrect use of HSIZE_T_FORMAT macro, needed to be sub macro H5_PRINTF_LL_WIDTH. 
Tested: local linux
 2015-04-27 16:20:15 -05:00
Allen Byrne
2417fd7b63 [svn-r26935] Add dataset name to mapping output 2015-04-27 16:08:53 -05:00
Allen Byrne
d292908e6f [svn-r26910] Add clarification that the files are Source 2015-04-23 15:16:22 -05:00
Allen Byrne
80f27eb1f4 [svn-r26909] Convert layout to switch and add virtual. Print number of maps and file names only. 
Tested: local linux
 2015-04-23 15:13:12 -05:00
Scot Breitenfeld
5e6d18e5be [svn-r26869] removed the --enable-fortran2003 option, it is now just --enable-fortran 2015-04-21 13:33:25 -05:00
Scot Breitenfeld
0cc9b0c79f [svn-r26825] Added include for preprocessing fortran files with configure definitions 2015-04-16 13:36:34 -05:00
Allen Byrne
11efaf4ff7 [svn-r26798] Fix other storage layout whitespace 2015-04-13 15:47:03 -05:00
Allen Byrne
26e709edc6 [svn-r26794] Fix formatting for selection. Irregular reuses blocks and points for datasets however indentation after line breaks are an issue. 2015-04-13 15:15:00 -05:00
Neil Fortner
6a27582a44 [svn-r26781] Merge revisions 26305 through 26780 from trunk to vds branch. 
Tested: ummon
 2015-04-10 18:00:48 -05:00
Allen Byrne
7a4b02567e [svn-r26775] Update error file with new item. 2015-04-09 15:52:06 -05:00
Albert Cheng
5cc53e3ba2 [svn-r26750] HDFFV-8667: h5repack crashes on enumerated 8-bit type nested in compound type. 
Added the testing to h5repack where it belongs.
Undo the tests added to h5dump.

Tested: h5committested plus tested in jam by hand.
 2015-04-07 13:10:21 -05:00
Allen Byrne
b9e5e2af4e [svn-r26721] Disable failing test 2015-04-03 13:57:24 -05:00
Larry Knox
3032f3adf3 [svn-r26711] Recommitting revisions 26669 and 26670, removing VPATH and redundant /usr/include and lib in fcompile and link flags checks, now that I have run reconfigure. 
Also changed paths to h5cc, etc. in scripts to run installed examples from relative paths to absolute paths.

Tested with h5committest.
 2015-04-02 16:07:53 -05:00
Albert Cheng
33c8035f0e [svn-r26702] HDFFV-8667: h5repack crashes on enumerated 8-bit type nested in compound type. 
Description:
The test added failed in some machines because the data file contains infinity values that different machines print them differently as "inf", "INF", "Inf", ...

Solution:
Added a "ignorecase" option to TOOLTEST() to do caseless matching between generated output vs expected output. This solved most machines problem for now.

Tested: h5committest, emu by hand for both development and production modes.
But cmake built h5dump failed to read the data file. Using the same source to build h5dump by autotools produced a h5dump that can read the test data file. Don't know why cmake could not produce a correct binary.
 2015-04-01 16:18:18 -05:00
Allen Byrne
99baa66184 [svn-r26699] Generators are only built static 2015-04-01 16:02:43 -05:00
Allen Byrne
6f03b60c61 [svn-r26693] Remove use of obsolete HDF5_USE_FILTER_{internal} 2015-04-01 13:30:56 -05:00
Allen Byrne
db2e8ff371 [svn-r26683] Remove internal filter checks 2015-03-31 16:28:44 -05:00
Allen Byrne
e9db2519b5 [svn-r26682] Add new test from test script 2015-03-31 16:16:59 -05:00
Albert Cheng
cf11eef385 [svn-r26677] HDFFV-8957: h52gif crashes when run against one of our own examples 
The tool claimed it could handle 24bit images but there was no code to handle it.
(or might be there were but was removed by previous revisions.)
Also discovered that it does not accept multiple images nor -p for palette
as its user document and online help message indicated.

Solution: 
Added code to verify dimension sizes are within 8 bit raster images limit and
added tests to verify the tools correctness.
Need to update user document tool.

Tested: h5committested.
 2015-03-31 14:13:34 -05:00
Larry Knox
306775bc98 [svn-r26670] Remove VPATH and LONE_COLON 
Tested with h5committest
 2015-03-30 19:05:07 -05:00
Allen Byrne
45577d5693 [svn-r26660] HDFFV-9131: autotols rework 
Remove CXX_CONDITIONAL
remove unneeded/obsolete sections.

h5commtitest
 2015-03-30 13:55:21 -05:00
Mohamad Chaarawi
01093ad350 [svn-r26649] squish warnings. 2015-03-30 10:12:49 -05:00
Larry Knox
ed599421c5 [svn-r26641] configure.ac: 
Remove VPATH and related search path syntax checking.
    Remove check for H5_LONE_COLON and checking for lone colon compiler confusion.
tools/h5dump/testh5dumpxml.sh.in
tools/h5dump/CMakeTestsXML.cmake
    Remove test skipping for compilers that were formerly confused by lone colon.

Tested with h5committest.
 2015-03-28 09:48:12 -05:00
Quincey Koziol
6f75afd15e [svn-r26635] Description: 
Bring r26651 from autotools_rework branch to trunk:

    Remove the VSNPRINTF_WORKS macro, it's working around bugs in old SGI
& HP compilers.

Tested on:
    Linux/32 2.6.18 (jam) w/serial & parallel
    (Daily tested on branch for 2+ days)
 2015-03-27 19:37:08 -05:00
Allen Byrne
e270981617 [svn-r26611] Remove complete section of VIRTUAL output. 2015-03-27 09:23:24 -05:00
Allen Byrne
451a91e53b [svn-r26594] Merge macros and fortran changes from dual_binary feature. 
Tested: local linux
 2015-03-25 17:08:46 -05:00
Elena Pourmal
1180e6f96d [svn-r26570] Commented lineis that print extra "VIRTUAL" keyword and blank lines for demo on 3/25/2015. Allen will need to review it. 2015-03-24 23:08:59 -05:00
Elena Pourmal
dd0e7540b6 [svn-r26567] h5dump was nopt displaying source selection correctly due to a type; fixed. 2015-03-24 18:31:00 -05:00
Quincey Koziol
61b5fa8e2d [svn-r26551] Description: 
Remove the VSNPRINTF_WORKS macro, it's working around bugs in old SGI
& HP compilers.

Tested on:
    MacOSX/64 10.10.2 (amazon) w/serial & parallel
    (h5committest not required on this branch)
 2015-03-23 17:16:28 -05:00
Jerome Soumagne
1cd7c16a9d [svn-r26509] Run reconfigure after merges from autotools_rework branch. 2015-03-20 14:15:51 -05:00
Jerome Soumagne
8a1d1b24cf [svn-r26505] Merge r26435 from autotools_rework branch. 
Remove DEFAULT_LIBS from configure.ac and irix6.x config file which
was using it.

Remove references to IRIX/irix* platform.
 2015-03-20 14:04:30 -05:00
Allen Byrne
66a9948e65 [svn-r26442] Removed blank line and fixed ALL output 2015-03-12 17:29:59 -05:00
Allen Byrne
4edde43ae5 [svn-r26440] Added new structure, removed ";", used static hyperslab arrays. 2015-03-12 16:22:48 -05:00
Dana Robinson
7659506fa8 [svn-r26438] Fixed some double promotion warnings from gcc 4.9.2. Most were in 
format strings.

Tested on: h5committest
 2015-03-11 17:51:14 -05:00
Jerome Soumagne
9379314551 [svn-r26435] Remove DEFAULT_LIBS from configure.ac and irix6.x config file which 
was using it.

Remove references to IRIX/irix* platform.
 2015-03-11 15:15:25 -05:00
Dana Robinson
77f1054b3d [svn-r26429] Merge of r26393-26428 from the trunk. 
Tested w/ h5committest
 2015-03-11 04:59:37 -05:00
Allen Byrne
92d7b82d61 [svn-r26418] Fix initial indent for selection_all 2015-03-10 15:53:57 -05:00
Dana Robinson
5aa5ed84da [svn-r26408] Missed an H5_HAVE_FILTER_SHUFFLE line. 
Part of: HDFFV-9086

Tested on: jam (minor change)
 2015-03-09 15:12:18 -05:00
Dana Robinson
ce19753d87 [svn-r26396] Merge of r26349-26392 from the trunk. 
Tested on: h5committest
 2015-03-09 03:47:16 -05:00
Mohamad Chaarawi
89ffc9f2d7 [svn-r26387] warning fixes from Feb27. 2015-03-06 14:53:23 -05:00
Allen Byrne
9cdf806eec [svn-r26383] Add MAPPING to VDS output 2015-03-06 12:53:56 -05:00
Allen Byrne
ec2e071c00 [svn-r26380] Recapture updated error files for h5dump tests 2015-03-06 08:53:42 -05:00
Allen Byrne
b3c3c8ea72 [svn-r26361] Added check for unlimited to count/block print selection 2015-03-04 14:14:50 -05:00
Allen Byrne
1aa5cd4fa5 [svn-r26353] Add VDS selection defines for ALL and NONE 2015-03-04 09:08:58 -05:00
Allen Byrne
f1c4d0ff3f [svn-r26352] Update h5dump to latest BNF - reg vs irreg hyperslabs. 2015-03-04 08:34:24 -05:00
Dana Robinson
5b294640c0 [svn-r26350] Merge of r26273-26348 from the trunk. 
Tested on: h5committest
 2015-03-03 19:27:40 -05:00
Dana Robinson
d8e3d8e908 [svn-r26333] Eliminates gcc warnings due to -Wunsuffixed-float-constants. 
- Adds 'F' suffixes for most float constants.

- A few constants MUST be of type double. These now receive the long
  double L suffix and are then cast to double. I do this via a new
  H5_DOUBLE() macro which was added to H5private.h.

Fixes: HDFFV-9148

Tested on: h5committest
 2015-03-01 13:48:54 -05:00
Dana Robinson
7462a7ef1c [svn-r26329] Merge of r26069, r26070, and r26072 from the features/autotools_rework 
branch.

Removed the configure option that allows selective disabling of individual
internal filters (fletcher32, shuffle, etc.).

This feature mucked up the code with a lot of #ifdefs, saved very little space,
and was not scalable to a general scheme for library size reduction. We've
decided to remove the feature while we investigate a more general scheme for
decreasing the library size.

Part of: HDFFV-9086

Tested on: h5committest
 2015-02-27 07:50:38 -05:00
Allen Byrne
45df14138d [svn-r26318] Update virtual layout to latest changes 2015-02-26 10:59:15 -05:00
Neil Fortner
952d00e7f0 [svn-r26306] Merge r26296 through 26304 from trunk to vds branch. 
It should no longer be necessary to use --enable-using-memchecker
make check fails due to an issue with h5ls apparently unrelated to the merge

Tested: ummon
 2015-02-25 17:06:18 -05:00