Commit Graph

1035 Commits

Author SHA1 Message Date
Allen Byrne
e55844b752 [svn-r30237] HDFFV-9939: Change cmake commands to reduce POST_BUILD custom commands. Fixes possible overruns on windows command lines. 2016-08-01 12:35:00 -05:00
Quincey Koziol
d3b724f86a [svn-r30201] Description:
Switch test framework to dynamically allocate the testing array, and
expand the length of the description field.

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial & parallel
    (h5committest forthcoming)
2016-07-18 17:36:44 -05:00
Larry Knox
3b507bb8c4 [svn-r30058] Correct typo in compile scripts that causes dropping of filename in -o outfile.
Addresses HDFFV-9530 and HDFFV-9938.
2016-06-08 15:14:32 -05:00
Allen Byrne
74f3326a67 [svn-r29862] Convert source list names from *_SRCS to *_SOURCES.
Add/convert most tools to use new HDF5_TOOLS_DIR instead of HDF5_TOOLS_SRC_DIR CMake VAR.
2016-05-04 10:06:05 -05:00
Binh-Minh Ribler
0d5910683d [svn-r29786] Purpose: Add new wrapper
Description:
    Added wrapper for H5Tset_nbit: void DSetCreatPropList::setNbit() const.
Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
2016-04-25 01:09:46 -05:00
Binh-Minh Ribler
32bdd82cc8 [svn-r29782] Purpose: Code improvement
Description:
    - Removed ArrayType::rank and ArrayType::dimensions and modified the methods
      ArrayType::getArrayNDims and ArrayType::getArrayDims to always call the
      C functions to get the rank and dimensions.
    - Overloaded ArrayType::getArrayNDims and ArrayType::getArrayDims to provide
      const version and marked the non-const version deprecated.
Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
2016-04-24 10:52:09 -05:00
Binh-Minh Ribler
997392079b [svn-r29766] Description:
- Changed object in catch statements to reference (left over from previous)

Platforms tested:
    Linux/32 2.6 (jam) (very minor)
2016-04-22 15:32:18 -05:00
Binh-Minh Ribler
c37607eb58 [svn-r29759] Purpose: Code improvements
Description:
    - Changed object in catch statements to reference
    - Replaced old-style casts or reinterpret_cast with static_cast
    - Removed unused name H5Library::need_cleanup
    - Removed Exception::printError from documentation
Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
2016-04-22 06:22:34 -05:00
Larry Knox
f5234cd194 [svn-r29379] Add individual LT_VERS_* variables for wrapper libraries: c++, fortran, java, hl, hl/c++, hl/fortran to so that the shared object version numbers can be incremented independently.
Disabled auto-increment of shared object version numbers by h5vers.

Files modified:
    config/lt_vers.am
    java/src/jni/Makefile.am
    hl/src/Makefile.am
    hl/c++/src/Makefile.am
    hl/fortran/src/Makefile.am
    c++/src/Makefile.am
    bin/h5vers
    fortran/src/Makefile.am
2016-03-09 13:55:31 -05:00
Binh-Minh Ribler
ab4c2402f1 [svn-r29362] Description:
Removed another left-over commented-out line.
Platforms tested:
    Linux/64 (platypus) - very minor
2016-03-08 22:46:24 -05:00
Binh-Minh Ribler
20bfdeb2c1 [svn-r29361] Purpose: Correction
Description:
    Replaced static_cast with reinterpret_cast for "void *".
    Removed some commented-out old code.
Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
2016-03-08 22:30:02 -05:00
Binh-Minh Ribler
116eed3ebd [svn-r29340] Purpose: Code cleanup
Description:
    - Removed many warnings:
        warning: use of old-style cast
        warning: enumeration value ‘H5D_VIRTUAL’ not handled in switch
        warning: comparison between signed and unsigned
      There are others of the same warnings and they will be taken care of
      in the next release.
    - Made some code reuse between overloads
Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
2016-03-08 07:23:54 -05:00
Binh-Minh Ribler
36c4634606 [svn-r29322] Purpose: Remove obsoletes
Description:
    Removed obsolete functions from the documentation.  They are still
    in the code, however, until the next two releases, just in case.
Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
2016-03-07 16:02:17 -05:00
Binh-Minh Ribler
b346cb0599 [svn-r29306] Purpose: Add function
Description:
    Added member function ArrayType::operator= because ArrayType has
    pointer data members.
Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
2016-03-07 10:42:30 -05:00
Allen Byrne
63249be0e1 [svn-r29226] HDFFV-9552: merge in java code. 2016-02-28 21:43:00 -05:00
Binh-Minh Ribler
72bc67f464 [svn-r29004] Description:
Removed extra ';'.
Platform tested
    jam (very minor)
2016-01-28 11:26:08 -05:00
Binh-Minh Ribler
a7ef06d593 [svn-r28906] Description:
Added c++/test/tarray.cpp.
2016-01-15 10:57:00 -05:00
Binh-Minh Ribler
0d68aa89ce [svn-r28905] Purpose: Fix user reported problem
Description:
    User Adam Rosenberger reported a failure when using the member function
    AbstractDs::getArrayType().  This problem was caused by missing
    initialization of the ArrayType's members in some cases.
Solution:
    - Added ArrayType::setArrayInfo() to retrieve rank and dimensions of
      an array and store them in memory for easy access.
    - Re-factored a few functions to use the new function.
    - We'll give him 1.8.16 patch
Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
2016-01-15 10:53:33 -05:00
HDF Tester
6d8b831b31 [svn-r28730] Snapshot version 1.9 release 233 2015-12-27 23:20:23 -05:00
Jerome Soumagne
2094d86461 [svn-r28138] Add first support for _Bool and make hbool_t a "real" _Bool if available
Fix tests accordingly and fix misuse of hbool_t in various places

Fix initialization of H5Pgcpl/ocpl structs in property decoding routines

Tested on:
    Linux/32 (jam)
    Linux/64 (platypus)
    Linux/PPC64 (ostrich)
    MacOSX/64 10.11
2015-10-20 01:28:17 -05:00
Binh-Minh Ribler
bd995868ee [svn-r28047] Purpose: Fix memory leaks
Description:
    - Implemented the friend function
        void f_PropList_setId(PropList* plist, hid_t new_id)
      to work around the same problem described in trunk r26655, for the
      API DataSet::getCreatePlist()
    - Cleaned up some comments and obsolete functions
Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
2015-10-12 23:57:28 -05:00
Binh-Minh Ribler
fc84edb7e3 [svn-r28027] Purpose: Fix memory leaks
Description:
    - Removed H5Library::instance because it is unnecessary.  All H5Library's
      methods are static.  This, in turn, removed the memory leaks by
      H5Library::instance not being deleted.
    - Added ObjCreatPropList::deleteConstants to atexist() list
    - Cleaned up comments and format inconsistencies with 1.8
Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
2015-10-10 23:05:21 -05:00
Elena Pourmal
d0babe88da [svn-r27968] Modified version number to 1.9.233 before creating a tar ball for DLS. 2015-10-06 12:03:41 -05:00
Binh-Minh Ribler
db00c23829 [svn-r27966] Description
Added H5OcreatProp.h and H5OcreatProp.cpp.
2015-10-06 09:48:32 -05:00
Binh-Minh Ribler
f17eb1e610 [svn-r27961] Purpose: Partial fix of issues HDFFV-9169 and HDFFV-9167
Description:
    Added wrappers for H5P[s/g]et_attr_phase_change and H5P[s/g]et_attr_creation_order

    // Sets attribute storage phase change thresholds.
    void setAttrPhaseChange(unsigned max_compact = 8, unsigned min_dense = 6)

    // Gets attribute storage phase change thresholds.
    void getAttrPhaseChange(unsigned& max_compact, unsigned& min_dense)

    // Sets tracking and indexing of attribute creation order.
    void setAttrCrtOrder(unsigned crt_order_flags)

    // Gets tracking and indexing settings for attribute creation order.
    unsigned getAttrCrtOrder()

Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
2015-10-05 23:31:58 -05:00
Binh-Minh Ribler
888a002cdd [svn-r27945] Purpose: Fix HDFFV-9529
Description:
    Merged from hdf5_CppAPI_Constants

    r27942:
    ------
    Description:
    - Added H5dont_atexit() to getPredType and all the getConstant's to prevent
    the C library from terminating before the C++ library cleanup.
    - More cleanup and added more comments

    r27923:
    ------
    - Updated more comments and moved some things around for consistency
    - Removed check for "new" failure, exceptions would be thrown

    r27922:
    ------
    Description:
        Added function headers and more comments for clarity.

    r27917:
    ------
    Description:
        The C++ library has several types of global constants from different
        classes, such as PropList, PredType, DataSpace, etc...  Previously,
        these global constants were declared statically and the C++ library used
        a constant, called PredType::AtExit, to detect when all the global
        contants are destroyed then close the C library (H5close).  This method
        relied on the order of the constants being created and destroyed and
        that PredType constants be the last to be destroyed.  In September 2015,
        it was recognized that the order in which the global constants were
        created and destroyed was actually undefined, thus can be different
        between different compilers.  This resulted in failure when compilers
        destroy PredType constants before others because when PredType::AtExit
        was destroyed, the C library was closed, so when the constants of other
        classes such as PropList or DataSpace were being deleted, the C library
        would not be available.

    Solution:
        The static approach is changed to dynamic.  In order to avoid an impact
        on existing applications, the static global constants are changed to
        constant references to the dynamically allocated objects.
        A detailed explanation of the new method and a description of the
        changes are in a Design Notes at the end of the file H5PredType.cpp.

        New functions added to support the new methods are listed below.

        class H5Library:
                // Returns a singleton H5Library to initialize the global
                // constants, invoked in IdComponent default constructor
                static H5Library* getInstance(); // public

                // Registers cleanup and terminating functions with atexit(),
                // called in IdComponent default constructor
                static void initH5cpp(void); // public

                // Calls H5close to terminate the library, registered with
                // atexit(), as the last thing to be done.
                static void termH5cpp(void); // public

        class PredType:
                // Creates the constants
                static void makePredTypes(); // private

                // Calls makePredTypes to create the constants and returns
                // the dummy constant PREDTYPE_CONST;
                static PredType* getPredTypes(); // private

        class DataSpace:
                // Creates the constant
                static DataSpace* getConstant(); // private

        class PropList:
                // Creates the constant
                static PropList* getConstant(); // private

        class DSetCreatPropList:
                // Creates the constant
                static DSetCreatPropList* getConstant(); // private

        class DSetMemXferPropList:
                // Creates the constant
                static DSetMemXferPropList* getConstant(); // private

        class FileCreatPropList:
                // Creates the constant
                static FileCreatPropList* getConstant(); // private

        class FileAccPropList:
                // Creates the constant
                static FileAccPropList* getConstant(); // private

        This function is added to PredType, DataSpace, PropList, and the four
        subclasses of PropList:
                // Deletes the constant
                static void deleteConstants(); // public

Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
2015-10-04 00:05:51 -05:00
Binh-Minh Ribler
0ef29b550b [svn-r27943] Purpose: Fix HDFFV-7947 (cont.)
Description:
    In the friend functions that setId, changed the direct assignment of
    id to using p_setId() so that the previous id can be closed first to
    avoid memory leaks.
    This change was tested and confirmed by user Jorj on Forum when his
    application stopped running out of memory.  Currently, the C++ library
    doesn't have a way to test this.  A function such as H5Inmembers for
    library ids would be helpful.
Platforms tested:
    Linux/32 2.6 (jam)
    SunOS 5.11 (emu)
    Darwin (osx1010test)
2015-10-03 13:56:21 -05:00
Dana Robinson
058ec37559 [svn-r27795] Removed some autotools generated files that were not caught by
the last checkin.

Tested on: bin/chkmanifest
2015-09-15 15:52:14 -05:00
Dana Robinson
9af344117c [svn-r27794] Reintegration merge of features/autotools_rework branch with trunk
NOTES:

- Developers will have to run autogen.sh before building with the autotools.

- autogen.sh takes the -p option to mimic the old bin/reconfigure behavior.

- The generated error, overflow and version headers have been left in place.

- The generated H5LT parser code has also been left in place.

- There are no changes for CMake users at this time.

Tested on: h5committest
2015-09-15 15:38:57 -05:00
Quincey Koziol
1023374492 [svn-r27768] Description:
Complete revamp of package initialization/shutdown mechanism in the library.
Each package now has a single init/term routine.

    This new way should avoid packages being re-initialized during library
shutdown and is also be _much_ more proactive about giving feedback for
resource leaks internal to the library.

    Introduces a new "module" header file for packages in the library
(e.g src/H5Fmodule.h) which sets up some necessary package configuration macros
for the FUNC_ENTER/LEAVE macros.  (The VFL drivers have their own slightly
modified version of this header, src/H5FDdrvr_module.h)

    Also cleaned up a bunch of resources leaks all across the library and tests,
along with addressing many warnings, as I encountered them.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    Linux/64 3.10.x (kituo) w/serial & parallel
    Linux/64 2.6.x (ostrich) w/serial
2015-09-13 22:58:59 -05:00
HDF Tester
f16361d5f1 [svn-r27767] Snapshot version 1.9 release 231 2015-09-13 19:43:47 -05:00
Allen Byrne
10da31a926 [svn-r27745] Merge trunk revision 27744 2015-09-10 09:11:17 -05:00
HDF Tester
34be1d1aed [svn-r27690] Snapshot version 1.9 release 230 2015-09-06 19:31:40 -05:00
Dana Robinson
59aa015d9f [svn-r27638] Merged r27500-27631 from trunk. 2015-08-31 23:36:17 -05:00
Scot Breitenfeld
e6f9fc5f7f [svn-r27625] Added preprocessor commands for PGI compiler.
tested: h5committest
2015-08-31 13:49:17 -05:00
HDF Tester
74792949c9 [svn-r27622] Snapshot version 1.9 release 229 2015-08-30 19:55:54 -05:00
Dana Robinson
2e6100fb23 [svn-r27572] Removed VMS-specific code from the library.
The only remaining code consists of a few floating-point tests
that rely on pre-generated and checked-in VMS files. These have
been left alone, even though they will not be possible to
recreate, since testing VMS float behavior is still important.

Tested on: h5committest
2015-08-24 15:19:39 -05:00
HDF Tester
abdb2a6456 [svn-r27551] Snapshot version 1.9 release 228 2015-08-23 19:21:39 -05:00
Scot Breitenfeld
d06fee7bd2 [svn-r27517] Removed all perl scripts from configure.
Tested: h5committest
2015-08-17 16:12:03 -05:00
HDF Tester
68347a67ef [svn-r27511] Snapshot version 1.9 release 227 2015-08-16 21:58:42 -05:00
Dana Robinson
c27d180848 [svn-r27507] Merge of r27237-27500 from the trunk.
Tested w/ h5committest

NOTES: - The manifest may still be messed up.
       - Cmake fails since the dual binary work needs to be merged with
         this repo's CMake externals.
2015-08-14 14:58:54 -05:00
Binh-Minh Ribler
c98d072e69 [svn-r27496] Description:
Used HTML_EXTRA_FILES for image files.
Platform tested:
    Re-run Doxygen on cpp_doc_config and verified the html files on a
    Windows 7 machine.
2015-08-11 13:36:39 -05:00
Binh-Minh Ribler
555a29e896 [svn-r27494] Purpose: Fix HDFFV-9288
Description:
    Added footer to include copyright and helpdesk info.
Platform tested:
    Re-run Doxygen on cpp_doc_config and verified the html files on a
    Windows 7 machine.
2015-08-11 11:44:07 -05:00
Scot Breitenfeld
caf0e7692a [svn-r27493] Trying again to merge the F2003_v1.10 branch to the trunk.
Tested: h5committest --PASSED--
2015-08-11 09:35:30 -05:00
Scot Breitenfeld
3b4696ccd1 [svn-r27489] reverted merge of branch 2015-08-10 20:22:33 -05:00
Scot Breitenfeld
a9bef45c75 [svn-r27470] svn merge -r27425:27460 https://svn.hdfgroup.uiuc.edu/hdf5/trunk 2015-08-05 16:35:30 -05:00
Allen Byrne
9e2434625d [svn-r27469] Merge from trunk with dual-binary CMake code.
Tested: local linux with CMake
2015-08-05 16:01:07 -05:00
HDF Tester
f56de26444 [svn-r27432] Snapshot version 1.9 release 226 2015-07-26 19:13:36 -05:00
Scot Breitenfeld
ed0bae78a0 [svn-r27426] svn merge -r27377:27425 https://svn.hdfgroup.uiuc.edu/hdf5/trunk 2015-07-22 17:09:05 -05:00
HDF Tester
74e4cd4d21 [svn-r27412] Snapshot version 1.9 release 225 2015-07-19 19:11:50 -05:00