conditional compile statements in the code to compile for the release.
defined a VERSION12 and VERSION13 macro. all changes were surrounded by these statements
from h5tools.h just got rid of a prototype for copy_atmoic_char which was never used
in the h5tools.c i removed the copy_atomic_char, all the display_*_data, where the * is numeric, string
or compound, the print_data, h5dump_attr. also removed a block of codfe that was surrounded by #if 0
Prints the subrelease name also.
** tools/h5tools.c
Fixed indentation problems in the first half of the file.
Changed conditional compilation style from `/*...*/' to use
#if 0/#endif in the first half of this file.
Removed some extra parentheses to make expressions more readable.
macros in the dumper. this was basically adding a space after most of the '}'.
there are some places that don't have the space because those '}' were not printed
by the end_obj macro
the header information in the dumper. the header is the part before the data
block.
in h5dump.c there is support for the new -xml option. prints the output in xml
using the structure we just defined in h5tools.h.
h5dump.h- changed the begin_obj and end_obj macros. take an extra parameter now
Bug fix.
Description:
Failed on T3E in which int32 is typedef to a short (4 bytes)
but the converter just used H5T_NATIVE_INT for conversion of
a STD_INT32. Int in a T3E is actually 64bit big.
Solution:
Recoded the h5type to h4type matching algorithm by making sure
the size of the H4 type used is equal to the size of the
H5 native type.
Remark: current implementation is not efficient--it does all
the sizes checking repeatedly. Should have done the type mapping
once at the beginning as initialization.
Old code are still retain via the macro NEWWAY. Need to verify
the correctness of the converter in more platforms before
finalized on the code.
Platforms tested:
Baldric (Solaris 2.6), arabica (Solaris 2.7)
T3E
now the dump structure contains 2 extra members that tell how to format the
data for the dataset regions(blocks and pts).
had to give h5ls values for these
in h5dump.c just initialized the values for the formatting struct.
in h5tools.c made some changes in the printing area to get the dump output to
look closer to what we wanted. the strings are currently not printing correctly.
also removed the program type variable from here.
Added -V option for displaying version information.
h5tools.c:
Added print_version routine to display version information.
h5tools.h:
Added print_version prototype.
with out the square braces. also the formatting for the compound types
in the dataset part section has been corrected.
still need to update the expected outputs so there will be some errors until
I get that all checked in...
** configure.in
** configure [REGENERATED]
** src/H5private.h
** src/H5public.h
** src/Makefile.in
Generates an H5pubconf.h file which is just like H5config.h except all
the preprocessor symbols have `H5_' prepended. This was done so that
the configuration results can be used in public header files without
polluting the namespace.
** src/H5.c
Added H5I_REFERENCE and H5I_VFL to the API tracing code so their names
are printed instead of just numbers.
** src/H5FDstdio.c
** tools/h5import.c
** tools/h5repart.c
** tools/pdb2hdf.c
Changed to use the `H5_' versions of configure results since these
files include only the public API.
** test/big.c
Removed a compiler warning.
** test/h5test.c
Removed unused code.
had to change some of the functions in the h5findshd.c file since we didn't
have the globals anymore. these changes also affected the h5toh5.c file.
passes all tests on unix
** bin/rpmsync
** config/depend1.in
Tweaks for versions of `make' that can't search directories.
** examples/Dependencies
** src/Dependencies
** test/Dependencies
** testpar/Dependencies
** tools/Dependencies
Regenerated all these with more complete path names.
so i moved the dumper stuff out to the libary. Had to change some functions
in h5findshd so they would stop using globals that shouldn't be defined in the
lib. I will remove the globals next. also the h5findshd.c has an extra member
to the struct for that objects in the table so i added that into the appropriate place.
the dumper is working ok now but the h5toh4 is still broken.
----------------------
./MANIFEST
./configure.in
./configure [REGENERATED]
Added more checking for `make' features.
./Makefile.in
./doc/Makefile.in
./doc/html/Makefile.in
./doc/html/Tutor/Makefile.in
./examples/Makefile.in
./pablo/Makefile.in
./src/Makefile.in
./test/Makefile.in
./testpar/Makefile.in
./tools/Makefile.in
./config/commence.in
./config/conclude.in
./config/depend.in [REMOVED]
./config/depend1.in [NEW]
./config/depend2.in [NEW]
./config/depend3.in [NEW]
./config/depend4.in [NEW]
./config/dependN.in [NEW]
The directory search stuff was moved into commence.in, thereby
shortening the Makefile.in prologues.
./doc/html/Dependencies [NEW]
./doc/html/Tutor/Dependencies [NEW]
./examples/Dependencies [NEW]
./src/Dependencies [NEW]
./test/Dependencies [NEW]
./testpar/Dependencies [NEW]
./tools/Dependencies [NEW]
The `.distdep' files were all renamed to `Dependencies' to make them
more obvious. They are required (but may be empty) in every directory
that has a Makefile.in that ends with @CONCLUDE@ (you'll get an
obvious error from make if you forgot to create one).
./bin/trace
./src/H5.c
Added H5E_major_t and H5E_minor_t although tracing only prints the
integer value.
./src/H5E.c
./src/H5Epublic.h
Added tracing information.
./src/H5FDcore.c
./src/H5FDfamily.c
./src/H5FDgass.c
./src/H5FDmpio.c
./src/H5FDsec2.c
./src/H5FDstdio.c
Fixed places where FUNC_LEAVE() evaluated it's argument more than
once.
Added tracing information.
Wrapped long lines.
./config/gnu-flags
Fixed a syntax error when we don't have a gnu compiler.
Bug fix.
Description:
If the H4DUMP (hdp) is not executable for some reasons (e.g., not
in $PATH), it produced zero sized files. The test script did not
detect the abnormality but compared the zero sized files the same
and concluded the test passed.
Solution:
Test if H4DUMP can produce valid output. If not, print warning
messages. Also check the size of output files to make sure they
are reasonably valid.
Platform tested:
Linux.
----------------------
./configure.in
./src/H5config.h.in [REGENERATED]
The /usr/ncsa/{include,lib} directories are only added if they
actually exist. This fixes a warning on some systems.
Checks for the <pdb.h> header file and also for either the PDB or Silo
library, and if found prepares to compile the pdb2hdf program.
./config/distdep
Relative path names for include files are changed to base names since
the makefile contains the logic for searching and since it's likely
that building the .distdep files happed from a location other than
where they would be used in the file system.
./config/conclude.in
Fixed shell errors when `for' loops iterate over nothing for the
`uninstall' target.
./src/H5D.c
./src/H5Oefl.c
File names for the external files are added to the heap when the
dataset is created instead of when the object header is written. This
fixes a rare infinite recursion bug.
./src/H5FD.c
./src/H5FDpublic.h
Optimization to the free list causes H5FD_alloc() usage to go from >10
seconds to <0.4 second for one example (converting a 30MB equation of
state file from PDB to HDF5 format). The optimization is to simply
keep track of the largest item in the free list and not search the
free list when the largest item is not big enough to satisfy the
request.
./src/H5FDcore.c
./src/H5FDcore.h
./test/h5test.c
If the `backing_store' property is true then a flush causes the entire
contents of memory to be written to the specified file. This is in
preparation for the ASCI/red optimizations and is currently tested by
the pdb2hdf `--cached' switch.
./src/H5Odtypes.c
Wrapped three long lines.
./tools/Makefile.in
./tools/pdb2hdf.c [NEW]
A PDB-to-HDF5 translator. It only translates meta data -- the
resulting HDF5 points into the PDB file for the raw data.
----------------------
./src/H5FDcore.c
Includes private headers instead of public in order to use the
`UNUSED' macro.
./src/H5FDpublic.h
Includes H5public.h just in case.
./src/H5P.c
Removed two unused variables in H5P_copy()
./src/H5FDgass.h
Fixed a C++ comment after a `#endif'
./src/Makefile.in
The H5FDgass.h file is public and must be installed in order for
applications to be able to use HDF5.
./tools/h5tools.c
Removed an unused variable.
----------------------
./src/H5public.h
We undefine a bunch of things that could get redefined in the config
file because some customers have applications that include headers
from multiple packages, all of which might be using autoconf.
Include <stdint.h> for the C9x types.
./test/h5test.h
More flushing of stdout for when testing is redirected down a pipe.
./tools/h5ls.c
Added a `-S' or `--simple' switch which causes the output to be
simplified somewhat for easier parsing by other scripts. For instance,
characters are escaped using a very simple mechanism instead of C's
more complicated backslash notation, data doesn't have `{}' or `[]'
characters interspersed for compound and array types, and data is
printed with exactly one element per line. This switch is now used by
an HDF5-to-HTML CGI script being developed for the DMF people.
./tools/h5tools.c
./tools/h5tools.h
The repeat threshold which controls how strings are printed when a
character repeats a bunch of times is now settable at runtime instead
of compile time. The default is to show all characters, like
"abceeeeeeeeeeeeeeeeeeeeeeeeeeeeeefgh"
But if you set it to something like 5 then any sequence of 5 or more
characters is replaced by something shorter, like:
"abc" 'e'x30 "fgh" or
Added an `str_locale' property which describes how to escape special
characters in strings. The default is C-like escapes but an
alternative is ESCAPE_HTML which replaces all non-alphanumeric
characters with a 3-character HTML escape of the form `%XX'
Fixed a bug where empty strings didn't even have the quote characters
printed. Now empty strings show up as `""' instead of absolutely
nothing.
Added a `per_line' property which controls the maximum number of
elements which will appear per line of output. The default is infinity
but in practice the right margin causes line breaks. By setting the
`per_line' value to one and the right margin to a very large value one
can achieve output with exactly one element per line.
h5tools.h- added a define for OBJECTID-->"OBJECTID"
h5dump.c - added an option in there to print object id's
still needs some testing but I just wanted the changes to be put up there before i
forget
----------------------
./src/H5O.c [1.2, 1.3]
Initialzed the padding area between the end of a message and
the end of the space allocated for that message. This
hopefully fixes an UMR error found by Quincey and prevents the
file from containing unwanted data.
./tools/h5ls.c [1.2, 1.3]
Fixed a bug where the `Data:' tag didn't get printed for
attributes that have more than five values.
----------------------
./src/H5D.c
Added additional elements to a variable initializer in
H5Dvlen_get_buf_size() to shut up a warning message. Also
added the API tracing call.
./src/H5F.c
Added file opening optimizations. If the driver doesn't
support the ability to determine when two file handles refer
to the same file (like MPIO and GASS) then H5F_open() makes
fewer calls to the driver's open callback. Also, if the
tentative file access flags are the same as the original flags
then H5F_open() makes fewer calls to the file device.
./src/H5FD.c
./src/H5FDprivate.h
./src/H5FDpublic.h
Added H5FD_get_class() so the library can get information
about what file driver callbacks are defined. This will be
useful when more optimization functions are added to the VFL,
such as for MPIO derived datatype I/O.
./src/H5FDcore.c
./src/H5FDfamily.c
./src/H5FDmpio.c
./src/H5FDmulti.c
./src/H5FDsec2.c
The driver symbols (like H5FD_CORE, etc) are actually function
calls. The functions were fixed to return correct values even
after calling H5close().
./src/H5FDmulti.c
./src/H5FDmulti.h
Added support for opening a file when parts are missing (only
if the caller explicitly allows that in the file access
property list).
Moved some common code sequences into macros or functions.
Added better support for reopening files. All the application
has to know is that the file is a multi file and the base name
from which all the member names are created.
More debugging output when the file is opened with the
H5F_ACC_DEBUG flag.
Fixed various bugs.
./src/H5Fistore.c
Chunked raw data was accidently allocated as meta data instead
of raw data.
./src/H5I.c
The H5Iget_type() function fails when invoked with an old
object ID (an ID which has been closed down).
./test/h5test.c
Added an extra argument when setting the multi file access
property lists so the test fails if it can't open one of the
sub-files.
./tools/h5ls.c
Improved the algorithm for deciding what file driver to
use. It basically tries all of the predefined drivers and is
now able to open family, split, and multi files without
looking for special characters in the file name.
Added `-e' and `--errors' switches which cause errors from
libhdf5 to be reported on stderr in addition to the simple
error message displayed by h5ls.
----------------------
This extensive change is the virtual file layer implementation. I've
ported and tested the sec2, family, and core drivers and only ported
the mpio driver (Albert will test it). So if you need MPIO I would
recommend sticking with the previous version for a while.
You will get a few compile warnings about split and stdio drivers not
being implemented and possibly tracing information not inserted in
some of the drivers. You can safely ignore them but I plan to fix
them.
I'm still working on the split driver because I just realized that it
needs a part of the VFL that isn't written yet.
Documentation is being updated also because there were some minor
changes (mostly just name changes). It should be available on my web
site later this week.
./MANIFEST
./src/Makefile.in
./src/hdf5.h
./src/H5Flow.c [REMOVED]
./src/H5Fstdio.c [REMOVED]
./src/H5Fsec2.c [REMOVED]
./src/H5Fsplit.c [REMOVED]
./src/H5Fmpio.c [REMOVED]
./src/H5Ffamily.c [REMOVED]
./src/H5Fcore.c [REMOVED]
./src/H5MFpublic.h [REMOVED]
./src/H5FD.c [NEW]
./src/H5FDcore.c [NEW]
./src/H5FDcore.h [NEW]
./src/H5FDfamily.c [NEW]
./src/H5FDfamily.h [NEW]
./src/H5FDmpio.c [NEW]
./src/H5FDmpio.h [NEW]
./src/H5FDprivate.h [NEW]
./src/H5FDpublic.h [NEW]
./src/H5FDsec2.c [NEW]
./src/H5FDsec2.h [NEW]
Removed/added files for virtual file layer.
./bin/trace
./src/H5.c
Removed unused public datatypes and added new VFL public
datatypes.
Changed an error message.
./config/BlankForm
./config/dec-flags
./config/gnu-flags
./config/hpux10.20
./config/hpux9.03
./config/irix5.x
./config/irix6.x
./config/solaris2.x
./config/unicosmk
Removed the H5F_OPT_SEEK and H5F_LOW_DFLT constants from the
configuration since they're no longer applicable. The default
file driver is always the sec2 driver and it always optimizes
calls to lseek() or lseek64().
./config/depend.in
C preprocessor errors generated during automatic dependency
building are sent to /dev/null to prevent them from appearing
twice in the make output.
./src/H5AC.c
./src/H5B.c
./src/H5D.c
./src/H5F.c
./src/H5G.c
./src/H5Gent.c
./src/H5Gnode.c
./src/H5HG.c
./src/H5HL.c
./src/H5O.c
./src/H5Oattr.c
./src/H5Odtype.c
./src/H5Oefl.c
./src/H5Oshared.c
./src/H5T.c
./src/H5detect.c
./test/ohdr.c
Changed H5F_ADDR_UNDEF to HADDR_UNDEF to be more consistent
with the `haddr_t' datatype which is now a public type.
./src/H5D.c
./src/H5P.c
./src/H5Ppublic.h
./src/H5Tconv.c
./test/cmpd_dset.c
./test/dsets.c
./test/overhead.c
./test/tselect.c
./test/tvltypes.c
The H5P_DATASET_XFER constant was changed to H5P_DATA_XFER
because the properties apply to all types of I/O operations,
not just datasets.
./src/H5B.c
./src/H5Bprivate.h
./src/H5D.c
./src/H5Dpublic.h
./src/H5F.c
./src/H5Farray.c
./src/H5Fistore.c
./src/H5Fprivate.h
./src/H5Fpublic.h
./src/H5Gnode.c
./src/H5Gpkg.h
./src/H5HG.c
./src/H5HL.c
./src/H5O.c
./src/H5R.c
./src/H5Sall.c
./src/H5Shyper.c
./src/H5Smpio.c
./src/H5Spoint.c
./src/H5Sprivate.h
./test/big.c
./test/h5test.c
./test/istore.c
./testpar/t_dset.c
./testpar/t_file.c
./tools/h5debug.c
./tools/h5ls.c
Modified to work with the virtual file layer by calling H5FD_*
functions instead of H5F_low_* functions and by passing file
access and data transfer properties by object ID instead of
pointer.
Changed H5D_transfer_t to H5FD_mpio_xfer_t since the
COLLECTIVE vs. INDEPENDENT transfer mode is specific to the
MPIO file driver.
Moved MPIO-specific stuff into the MPIO driver.
./src/H5B.c
./src/H5D.c
./src/H5Fprivate.h
The H5F_mpio_* private functions were renamed and placed in
the H5FDmpio driver except those which appeared in H5Smpio.c.
./src/H5E.c
./src/H5Epublic.h
Added major error number H5E_VFL for virtual file layer
related errors.
./src/H5F.c
./src/H5Fprivate.h
Changed the logic that controls whether the boot block is
written. Instead of assuming that the first call to write the
boot block is only to allocate space, I've added a function
argument which makes this explicit.
Changed the way files are compared so that a driver-defined
comparison function can be called. Files which belong to
different drivers are always considered different.
Removed H5F_driver_t since file drivers are now identified by
object ID instead of a special non-user-extendible datatype.
Removed all the hard-coded low-level file properties which
have been replaced by the various file drivers.
./src/H5I.c
./src/H5Iprivate.h
Added the H5I_inc_ref() which was removed a few months ago
since we finally have a use for it.
./src/H5Ipublic.h
Added the H5I_VFL object ID type to identify file drivers in
the virtual file layer.
./src/H5MF.c
./src/H5MFprivate.h
Moved all the allocation/deallocation code into the virtual
file layer which allows file drivers to override much of it.
./src/H5P.c
./src/H5Ppublic.h
Moved file driver-specific code into the various file driver
files.
The H5Pcopy() and H5Pclose() functions make calls into the
virtual file driver to manage the memory for driver-specific
file access and data transfer properties.
./src/H5private.h
./src/H5public.h
The `haddr_t' type is now public.
./test/tfile.c
Added a few more comments.
----------------------
./Makefile.in [1.3]
./examples/Makefile.in [1.3]
./pablo/Makefile.in [1.3]
./src/Makefile.in [1.3]
./test/Makefile.in [1.3]
./testpar/Makefile.in [1.3]
./tools/Makefile.in [1.3]
./config/commence.in [1.3]
./config/conclude.in [1.3]
./config/depend.in [1.3]
Added a `.PATH' target for Irix pmake which is identical to
the VPATH used by most other `make' programs. Irix 6.5 (or
6.4?) and later `make' ignores VPATH.
Started all beginning-of-line comments with `##' instead of
just `#' because Irix `pmake' barfs on things like the
following because it sees the `# if' as a directive:
# make will barf on the following line
# if running Irix pmake
./config/commence.in [1.3]
Added empty definitions for optional `make' macros because
Irix pmake complains if it sees a macro which has never been
defined. The main body of the Makefiles can redefine these
macros to whatever they need.
Fixed a bug reported by Albert: the indices for data printed
by h5ls were starting over at zero for each pass through the
strip mining loop.
Fixed indentation in one function.
Replaced commented-out code by #if 0
updated the functions that create the tstr.h5 and tdset.h5 so they have
different values in the integer parts of the data.
for the tdset: it is i+j for the values instead of just i.(i and j are variables
used in a set of nested for loops)
for the tstr.h5: changed the data(originally just l to (l+k+j) squared).
these 3 variables are from 3 nested for loops.
more changes to tests to come
oooops i forgot to include a case statement in two switch statements (1 in each file)
that print the actual data of the enum datasets
i had to change a line of h5dump_sprint.
when it checks to see that is an enum val isn't an escape sequence i appended
this result onto the end of the str
because it is predefined in <errno.h>, not <sys/errno.h> which
contains the system error codes.
Fixed and tested in IRIX6.5 (also got rid of the few K&R C-style
function declaration statements.)
Changes since 19990615
----------------------
./README
Version number synchronized with library.
./bin/h5vers
If the version number of the library is changed then the first
line of the README file is also changed to something like
This is hdf5-1.2.3 currently under development
The `release' script (which also gets run by `snapshot')
changes that line to include the release date but keeps the
version number the same. The net effect is that the version
numbers in README and H5public.h should now always stay
synchronized.
./bin/snapshot
The CVS checkin comment includes the version number for the
snapshot that was just made.
./tools/testh5toh4
Changed `*-SKIP-*' to `-SKIP-' to be consistent with the other
tests.
hdp before HDF 4.1r3 does not handle Vgroups loops correctly.
Solution:
Added codes to detect the library version of hdp command. Skipped
tests for loops. Tested in an old solaris with HDF 4.1r2, Solaris 2.6
and Hawkwind.
Changes since 19990614
----------------------
./src/H5D.c
Changed the way the plist_id argument of H5Dvlen_reclaim() is
checked so that it's more specific and works when debugging is
turned off.
./src/H5TB.c
Removed an unused local variable.
./test/fillval.c
./test/h5test.c
./test/h5test.h
Changed `basename' variables to `base_name' to prevent a
warning about a global with the same name.
./tools/h5ls.c
Changed `indent' variables to `ind' to prevent a warning about
a global with the same name.
./tools/h5toh4.c
Commented out declarations for things that normally appear in
system header files since our definitions might be
incompatible with the system and prevent h5toh4 from
compiling. If all looks good on other systems then we can
permanently remove these declarations...
Changes since 19990611
----------------------
./doc/html/H5.format.html
Added documentation for opaque data types (bitfield types were
already documented but they were out of order).
./src/H5E.c
Fixed a bug with glibc2 on linux systems where `stdout' is an
extern and can't be used to initialize static data.
./src/H5T.c
./src/H5Tpkg.h
./src/H5Tpublic.h
./src/H5detect.c
Removed the `_T' from the new C9x types I just added so the
names are consistent with existing types. Besides, the fact
that something is a datatype is obvious because it starts with
H5T_NATIVE_.
./tools/h5ls.c
Added the new C9x data types. H5ls prints one of these types
only if it doesn't match one of the builtin C types.
Prints the OID for shared data types.
Fixed a formatting bug with symbolic links which was
introduced a few changes ago.
The commandline has been changed so that objects from multiple
files can be listed with a single command. Instead of
specifying a file name and an optional list of objects, each
thing to print is a file name and object concatenated. H5ls
figures out how to devide the name into a file name and object
name even when the file name part doesn't correspond to an
actual Unix file.
Old syntax: h5ls [OPTIONS] FILE [OBJECTS]
New syntax: h5ls [OPTIONS] FILE[/OBJECT] [FILE[/OBJECT]]...
Example ({X,Y} is expanded by the shell)
Old command: h5ls -d ../test/x.data dir1 dir2
New command: h5ls -d ../test/x.data/{dir1,dir2}
The filename is printed as part of the object name when full
names are requested (--full or --recursive). If people really
don't like this they can undefine a constant at the top of
h5ls.
Errors from the hdf5 library are turned off.
Commandline switches of the form `--width 80' are accepted in
addition to `--width=80'. This is more symmetric with
single-letter switches that take two forms: `-w 80' and
`-w80'.
./src/H5D.c
Added tracing instrumentation for H5Dvlen_reclaim().
./src/H5private.h
Added casts to int for the isalpha() et al macros to shut up
solaris warnings about char subscripts.
the generanted hdf files against saved output of hdp. This did not
work well because whenever the hdp changes its output format, the
tests failed unnecessarily. The tests also failed if the test machine
uses a different version of HDF library from the HDF5 development
machine.
Changed the algorithm to compare the generated HDF files against
saved HDF files (first by a simple cmp; if that fails, compare the
output of the host machine's hdp on both HDF files.)
Saved HDF files are stored in testfiles/Expected.
Tested on Hawkwind (FreeBSD) with srcdir option and Baldric (Solaris)
without srcdir option.
the generanted hdf files against saved output of hdp. This did not
work well because whenever the hdp changes its output format, the
tests failed unnecessarily. The tests also failed if the test machine
uses a different version of HDF library from the HDF5 development
machine.
Changed the algorithm to compare the generated HDF files against
saved HDF files (first by a simple cmp; if that fails, compare the
output of the host machine's hdp on both HDF files.)
Tested on Hawkwind (FreeBSD) with srcdir option and Baldric (Solaris)
without srcdir option.
while-loop. Prepare it for the next revision in which the hdp
will apply to both the converted hdf4 file and a preserved hdf4
file, then compare the hdp output from both for h5toh4 converter
correctness.
separated the dumping of the attributes and datasets. works on nt but
on unix(baldric) adds an extra line that says cannot print data.
this is just a temporary checkin until i can figure out what is wrong
----------------------
./tools/h5ls.c
./tools/h5tools.c
Added support for printing bitfields and opaque data.
./test/dsets.c
Added bitfield and opaque datasets to the output file so h5ls
has something interesting to print.
./test/trefer.c
Resync'd
./src/H5Tconv.c
Fixed bitfield conversion which resulted in possible garbage
in high-order bits of destination when the destination type is
larger than the source type. Thanks for spotting it, Quincey.
----------------------
./tools/h5tools.c
Finished code which prints references (object and dataset
region). Patrick, if you tell me how h5dump should (or might
want to) print references I can make some changes to support
various formats...
You can try it out with:
cd test
env HDF5_NOCLEANUP=yes ./testhdf5
../tools/h5ls -dvr trefer1.h5
../tools/h5ls -dvr trefer2.h5
(run h5ls with no arguments if you forgot what the switches do)
./test/trefer.c
Call calloc instead of malloc in one place to prevent
uninitialized data from being written into the file.
----------------------
./tools/h5ls.c
./tools/h5tools.c
./tools/h5tools.h
Finished the `-x' or `--hexdump' switch, which causes all data
to be printed in hexadecimal format with no translation from
file to memory data type.
----------------------
./doc/html/Datatypes.html
./test/dtypes.c
Added documentation and tests for opaque types.
./tools/h5ls.c
Added a `-x' or `--hexdump' argument which is not fully
implemented (because I want to synchronize h5tools.c first)
but which will eventually print raw data in hexadecimal format
without any translation from disk. This would be useful for
debugging references and VL types.
./tools/h5tools.c
Added support for references (not quite finished yet, but
compiles -- I wanted to sync up this file before Patrick and I
got too far apart...)
./src/H5R.c
Checked for error return value from H5R_get_object_type()
./src/H5A.c
./src/H5D.c
Changed error return values from NULL to FAIL
./test/Makefile.in
./test/trefer.c
Creates trefer1.h5 and trefer2.h5 so that the second test
doesn't clobber the first file since the files might be useful
for debugging.
added the programtype variable and modified certain functions so they would use
this variable. started combinin h5dump_simple and h5dump_simple_dset into 1 function.
added an extra parameter to the h5dump_simple_dset function that because the
h5dump_simple function uses a var that isn't present in the dump_simple_dset
added a new variable to the tools lib that keeps track of what program is using
the library. h5ls.c and h5dump.c needed to init the variable to the correct
value for the programtype variable. this variable will hopefully only be temporary
until the lib gets combined farther
fixed the last bug with the repeating in the tstr.h5 test
added an extra parameter to the h5dump_sprint function. it was for the repeat_threshold
before it was hardcoded as 8 but now i let it be a parameter so that if it is set to
a negative number then it will not count the repeats and print all the values out.
fixed the null pad error and the extra quotes that were appearing in the strings.
still need to get rid of the part where it will say something repeats x amount of
times
changing the display_numeric_data abd the display_string to use the h5dump_sprint
from the tools lib.
added a section to initialize the h5dump_t variable in both these functions.
in the display_string had to remove the extra quotes that gets displayed when
printing.
in h5dump_sprint i changed the for loop in the case of the string.
I added a check to see if the last character is a \0. it was being printed
before.
