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938 Commits

Author SHA1 Message Date
Dana Robinson
110cafb9c7 Merge branch 'develop' into tools_vol_update 2020-04-06 09:38:00 -07:00
Jordan Henderson
5d1590079e Merge pull request #2490 in HDFFV/hdf5 from tools_vol_update to develop 
* commit 'a5a2fb44296327787476407a249d9470b3c80427':
  Skip testing of passthrough VOL connector in a Family File tools test
  Restore previous tools library driver name behavior with passthrough VOL connector
 2020-04-03 15:06:08 -05:00
Jordan Henderson
08e77ac6fa Restore previous tools library driver name behavior with passthrough VOL connector 2020-04-03 12:45:22 -05:00
Dana Robinson
85b3b9e670 Updated tools dump output when dataset offset is undefined. 2020-04-02 10:25:46 -07:00
Dana Robinson
1c85473766 Fixed unnecessary H5R casts in the tools that were raising warnings. 2020-04-02 03:57:05 -07:00
Dana Robinson
456308ff17 Added checks for native optional call support in some of the tools. 2020-04-02 02:12:19 -07:00
Dana Robinson
3cd1b46b9c Merge branch 'develop' into tools_vol_update 2020-04-01 23:27:08 -07:00
Dana Robinson
b1533616f2 Minor renaming in the tools code. 2020-03-31 16:58:24 -07:00
Dana Robinson
36e8e2be4b Misc changes for h5dump VOL changes. 2020-03-30 01:51:36 -07:00
Allen Byrne
c66ce89383 Merge pull request #2473 in HDFFV/hdf5 from tools_vol_update to develop 
* commit 'feb0f521b16b79485c22c86a630a1d91cb680a61':
  Fix some missing symbols issues in tools library
 2020-03-27 17:06:23 -05:00
Jordan Henderson
feb0f521b1 Fix some missing symbols issues in tools library 2020-03-27 16:54:05 -05:00
Jordan Henderson
d5bbf3d408 Merge pull request #2469 in HDFFV/hdf5 from tools_vol_update to develop 
* commit 'ea952b25ba0fd5c4b5f60a94e75a1b5b78e66172':
  A few small tweaks to the tools from review
  Replace usage of some standard library functions with HD- versions
  Update Tools library to be better compatible with VOL connectors
 2020-03-27 13:14:22 -05:00
Jordan Henderson
ea952b25ba A few small tweaks to the tools from review 2020-03-27 10:48:11 -05:00
Jordan Henderson
6d514db55a Replace usage of some standard library functions with HD- versions 2020-03-26 15:26:39 -05:00
Allen Byrne
0da6786185 unused set-variable in macro 2020-03-25 07:04:19 -05:00
Allen Byrne
2b8407a3ca Fix Werror issues in JNI and tools 2020-03-24 17:42:58 -05:00
Allen Byrne
1505fa1498 TRILAB-192 restrict extensive warnings to libraries 2020-03-24 16:45:12 -05:00
Jordan Henderson
fa087c3919 Update Tools library to be better compatible with VOL connectors 
Modify h5repack to integrate with VOL connectors

Update tools library to accomodate VOL connectors

Update logic in h5tools_fopen for VOL connectors

Add command-line options to h5repack for specifying in/out VOL
connectors

Implement h5tools_set_vol_fapl

Fix library shutdown issue

Integrate ROS3 and HDFS VFDs into new h5tools_get_fapl() scheme

Avoid H5Ocopy in h5repack when using different VOL connectors

Update h5tools_test_utils.c for ROS3 and HDFS integration
 2020-03-17 14:25:36 -05:00
Allen Byrne
5abf6785cb Whitespace 2020-02-29 14:01:55 -06:00
Allen Byrne
666205a55f TRILAB-142 Change minimum CMake version to 3.12 2020-02-21 16:16:06 -06:00
Allen Byrne
c5e2d97573 Small fixes for tools and skip autotools tests for no filter 2020-01-29 15:39:25 -06:00
David Young
43d41633a1 Merge pull request #2318 in HDFFV/hdf5 from ~DYOUNG/werror:reduce-werror-diffs-1 to develop 
* commit 'fa1b2f6ef35c459c9f74ead885c119ae7f61c056':
  Reduce differences between my -Werror branch and `develop`:
 2020-01-29 13:51:52 -06:00
David Young
fa1b2f6ef3 Reduce differences between my -Werror branch and develop: 
Rename index -> idx, fileno -> fnumber, fileno -> fno to avoid GCC
shadowed declaration warnings about index(3).

Convert #pragma GCC diagnostic push/pop/ignored to the HDF5 library's
H5_GCC_DIAG_OFF()/H5_GCC_DIAG_ON() macros.
 2020-01-28 20:35:28 -06:00
Jordan Henderson
e41f671d2f Introduce new H5VL _by_value routines 2020-01-28 18:18:38 -06:00
Kimmy Mu
71c050f837 Merge pull request #2311 in HDFFV/hdf5 from ~KMU/hdf5:misc to develop 
* commit '406330addf45529ecdd088f4d22e9aab9a03661d':
  rename macro
  change condition
  pick up from Dave's fix
  leave Wswitch-default for later fix
  fix Wredundant-decls, Wswitch-default, Wdeclaration-after-statement, Wsign-compare, Wmisleading-indentation, Wshadow
 2020-01-28 13:28:26 -06:00
Dana Robinson
15a1bce9a2 Merge pull request #2304 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:isnan_fixes to develop 
* commit '8b4d774eb9bb95cb3c59f033b43ed9fba340a54a':
  Replaced my_isnan with C99 isnan in h5diff.
 2020-01-28 02:44:07 -06:00
kmu
5163a7e1cf fix Wredundant-decls, Wswitch-default, Wdeclaration-after-statement, Wsign-compare, Wmisleading-indentation, Wshadow 2020-01-27 09:01:32 -06:00
Dana Robinson
8b4d774eb9 Replaced my_isnan with C99 isnan in h5diff. 2020-01-23 20:12:16 -08:00
Dana Robinson
9475ee5d59 Optimized the floating point comparisons a little bit. 2020-01-23 19:12:24 -08:00
Dana Robinson
a85e4a75b2 Fix for failing h5diff tests involving floating-point compares. 2020-01-23 18:58:08 -08:00
kmu
838d4ec56b squash cast warning fix 2020-01-23 15:12:00 -06:00
Allen Byrne
ee1fa14066 Change tools debug macros to not use error stack 2020-01-23 10:20:34 -06:00
Kimmy Mu
d741405363 Merge pull request #2295 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/float to develop 
* commit '9afaf94bef740f89958a1a8aae369d5f607845f4':
  not use hdf5 private header
  fix float type cmp warning
  fix float type cmp warning
 2020-01-22 20:59:49 -06:00
kmu
04a2d20bba fix float type cmp warning 2020-01-22 12:55:01 -06:00
kmu
9be5b2842e merge and fix 2020-01-20 21:11:32 -06:00
kmu
628d267162 merge and fix conflict 2020-01-19 08:09:44 -06:00
Allen Byrne
db65d57541 Correct standalone function attributes 2020-01-17 12:15:16 -06:00
Allen Byrne
1643f591d6 Standalone should not use import/export attributes 2020-01-17 10:08:10 -06:00
Dana Robinson
a92c735c9b Squashed commit of the token_refactoring branch: 2020-01-16 13:29:34 -08:00
kmu
d46ea2d08a merge and fix conflicts 2020-01-14 11:28:27 -06:00
Allen Byrne
341600b4a6 Update tools hid_t declarations with H5I_INVALID_HID 2020-01-13 17:10:09 -06:00
kmu
9712fad601 fix unused related warnings 2020-01-13 13:20:19 -06:00
Allen Byrne
9b82f8c0ac Fix standalone compile issues 2020-01-09 16:00:13 -06:00
Kimmy Mu
127f07d64a Merge pull request #2071 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/intel_warnings to develop 
* commit '0a2bb11b248df6841daabca3970df5d8504adfc7':
  address problems from comments
  fix and address comments
  change according to previous comments
  add missing piece
  remove unnecessary check macro
  fix intel compile warnings
  Revert "fix warnings from Intel compiler"
  Revert "fix warnings and some text alignment"
  Revert "let hdf5 pick up the right compiler in Intel environment"
  Revert "fix issues from previous PR comments"
  Revert "using a different MACRO"
  using a different MACRO
  fix issues from previous PR comments
  let hdf5 pick up the right compiler in Intel environment
  fix warnings and some text alignment
  fix warnings from Intel compiler
 2020-01-06 12:17:10 -06:00
Quincey Koziol
0225e6d596 Small changes from the token_refactoring branch, to reduce the delta to develop 2020-01-03 22:16:38 -06:00
Jordan Henderson
9c9b9b1c7a Fix issue in h5dump where reference objects weren't being destroyed 2019-12-31 11:33:27 -06:00
Jordan Henderson
1795aa660a Clean up tools warnings introduced by H5TOOLS_ERR_INIT macro 2019-12-30 18:02:06 -06:00
Jordan Henderson
2cbf31cb3a Refactor tools library error handling macros 2019-12-28 14:08:04 -06:00
Allen Byrne
de0f667076 Fix compile statement order 2019-12-20 14:18:01 -06:00
Allen Byrne
23f813026f HDFFV-10976,-10980 Init obj_type before calling H5Rget_obj_type3 2019-12-20 13:23:48 -06:00