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42 Commits

Author SHA1 Message Date
Scot Breitenfeld
117d579c32
Consistent initialization of hid_t in the tests (#3521) 2023-09-08 18:06:23 -05:00
Dana Robinson
d24f5d5223
Convert hbool_t --> bool in testpar (#3495) 2023-09-05 11:49:37 -07:00
H. Joe Lee
e0083c48e9
chore: fix grammar - get hang -> get hung (#3272) 2023-07-24 14:44:02 -05:00
jhendersonHDF
aab497a631
Fix some warnings in developer builds (#3247) 
* Fix some warnings in developer builds

* Switch approach to Winline flag
 2023-07-18 04:27:07 -07:00
Dana Robinson
39e6bf48c9
Remove HD from HDmem* calls (#3211) 2023-06-29 12:33:46 -07:00
Dana Robinson
fd933f30b1
Remove programmer/date from comments (#3210) 
* Removes Programmer: and Date: fields
* Fixes a few Modifications: fields leftover from previous work
 2023-06-29 12:13:29 -07:00
Dana Robinson
aebac33a1f
Remove HD from memory allocate/free calls (#3195) 
* HDcalloc
* HDfree
* HDmalloc
* HDrealloc
 2023-06-28 15:48:12 -07:00
Dana Robinson
187ea8a9ae
Rename HD(f)printf() to (f)printf() (#3194) 2023-06-28 08:31:32 -07:00
Scot Breitenfeld
197e7792a1
Added summary report to test big IO (#2908) 2023-05-05 10:52:25 -07:00
Quincey Koziol
49a71463a0
Comment cleanup (#2689) 
* Clean up content and redundant logging in comments.
 2023-04-11 09:41:32 -05:00
jhendersonHDF
f105dcc20a
Synchronize HDF5 tests with VOL tests (#2628) 2023-04-03 13:08:39 -05:00
Mark Kittisopikul
5d3d43b1ee
Fix new codespell issues (#2521) 
* Fix new codespell issues

* Have codespell ignore ./config/sanitizer/sanitizers.cmake
 2023-03-08 14:42:47 -06:00
jhendersonHDF
07efecd9f4
Adjustments to t_bigio.c for >2GiB I/O test (#1992) 2022-08-17 10:44:00 -07:00
luzpaz
174505ca3c
Fix typos found in the rest of the hdf5 code-base (#1985) 
* Fix typos found in the rest of the hdf5 code-base

* Typo in tool.cmake

* Revert "Typo in tool.cmake"

This reverts commit 06b8403d99.

* Fix clang-format styling
 2022-08-10 13:57:26 -07:00
Allen Byrne
ae414872f5
Develop clang 13 format (#1933) 
* Update format source to clang 13

* More format changes
 2022-07-26 14:45:46 -07:00
jhendersonHDF
2b323159a7
Warnings fixes (#1680) 2022-04-25 12:16:18 -05:00
Neil Fortner
feda52b084
Implement support for big I/O for independent reads (#1446) 
* Implement big I/O support for independent reads. Add test for this.

* Committing clang-format changes

* Update big I/O code in H5FD__mpio_write() to match that in
H5FD__mpio_read().

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
 2022-02-18 09:27:05 -06:00
Scot Breitenfeld
f859cb732b
Fixed Spelling Errors (#1166) 
* fixed missed closing of a dataset

* fixed missed closing of a dataset

* fixed typo in error return

* Committing clang-format changes

* minor edits

* code format

* Committing clang-format changes

* code format

* minor edit

* switched from using MPI_count, to actual bytes written for H5FD_mpio_debug rw debugging

* Committing clang-format changes

* changed size_i in printf to reflect the I/O.

* Committing clang-format changes

* Fixed seg fault with xlf on BE with -qintsize=8

* fixed error function string

* spelling corrections via codespell, added new spell check github actions

* Committing clang-format changes

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* Committing clang-format changes

* misc

* misc

* misc

* misc

* misc

* misc

* Committing clang-format changes

* misc

* work around for https://github.com/codespell-project/codespell/issues/2137

* misc

* added missing file

* misc

* misc.

* misc

* switch to using Codespell with GitHub Actions

* misc.

* misc.

* fixed more sp errors

* Fix new typos found by codespell.

* fixed proceed with precede

* fixed variable in fortran test

* fixed minnum

* updated spelling list

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
 2021-12-07 08:27:29 -06:00
Dana Robinson
f0e0c7ed2a
Fixes parallel issues from recent C99 changes (#809) 
* Fixes parallel issues from recent C99 changes

* Adds MPE FUNC --> __func__ changes missed in earlier PRs

* Even more missed FUNC --> __func__ macros
 2021-06-30 10:17:35 -05:00
Quincey Koziol
3dbbd8aea1
Align with "parallel fence" changes (#479) 
* Small code updates and simplifications

* Committing clang-format changes

* Fix 'make installcheck' for parallel builds

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
 2021-03-24 15:57:32 -05:00
Allen Byrne
b2d661b508 Clang-format of source files 2020-09-30 09:27:10 -05:00
David Young
6486892de5 Fix some HDfprintf compilation errors: use the right format strings 
("zu", PRIuHSIZE), avoid casting some printf arguments, pass the right
number of arguments.
 2020-09-24 16:34:51 -05:00
David Young
f19e06b59e testpar/t_2Gio.c: Fix a typo that I think was introduced by a 
previous warnings PR.  An array element was assigned to
        itself---shape[2]Â =Â shape[2];---instead of being assigned to
        chunk[2].

fortran/src/H5Pf.c: move conditional compilation controlled by
        H5_NO_DEPRECATED_SYMBOLS outside of a function for readability.

fortran/src/H5match_types.c: put a variable's declaration under the same
        conditional compilation (H5_FORTRAN_HAVE_C_LONG_DOUBLE) as its
        use.

For now, skip compilation of some unused debug dump routines in the JNI.
While I'm in the JNI, delete a set-but-unused variable.

src/H5Z.c: condition a variable declaration on H5_NO_DEPRECATED_SYMBOLS
        so that it's not declared but unused or vice versa.

test/cache_common.h: add an #include in to get some symbols we need to
        avoid implicit declaration warnings.

test/dsets.c: use a more conventional conditional-compilation syntax.

test/dt_arith.c, test/fillval.c: initialize a bunch of uninitialized
        variables before use.

test/vfd.c: pass the expected type of `void **` to posix_memalign(3)
        instead of `int **`.

testpar/t_bigio.c: explicitly compare with 0 instead of using ! when
        "equal to 0?" is the question not "is false?"  Repair some
        indentation while I'm here.

testpar/testpar.h: repair misaligned line-continuation backslashes in a
        macro that probably should be a function so that we don't have
        to fiddle with the line continuation to begin with.

tools/src/h5repack/h5repack_main.c: fix some compiler fussing about
        enums.

tools/test/perform/pio_engine.c: the compiler fusses if you cast a
        function call returning double directly to off_t.  It's ok if
        you cast a variable that's a double to off_t, however.  Write
        and use a new function, sqrto(), to avoid the cast warnings.
 2020-01-29 11:44:39 -06:00
kmu
406330addf rename macro 2020-01-28 13:27:50 -06:00
kmu
cd2f954314 pick up from Dave's fix 2020-01-27 12:57:33 -06:00
kmu
54610a7c47 leave Wswitch-default for later fix 2020-01-27 11:38:20 -06:00
kmu
5163a7e1cf fix Wredundant-decls, Wswitch-default, Wdeclaration-after-statement, Wsign-compare, Wmisleading-indentation, Wshadow 2020-01-27 09:01:32 -06:00
kmu
838d4ec56b squash cast warning fix 2020-01-23 15:12:00 -06:00
kmu
f22e258586 remove unsed var,function,macro, etc 2019-12-06 12:03:19 -06:00
Richard Warren
299c9ed5fe Removed set_bigio_count prototype since it has been added to H5private.h 2019-10-25 11:28:21 -04:00
Richard Warren
94d14191fa Change API names for get/set bitio_count. Also added H5_mpi_set_bigio_count to H5private.h. 2019-10-23 14:41:45 -04:00
Richard Warren
abb43d3d3a Remove debugging logic from the new t_bigio test 2019-10-08 15:03:13 -04:00
Richard Warren
06db420929 Expanded t_bigio.c to include Jordan's test from HDFFV-10539 2019-10-08 13:23:32 -04:00
Richard Warren
a97c0d418d At the suggestion of the PR reviewers, moved the mpio_create_large_type to H5mpi.c and renamed the function appropriately. Also moved some support functions to set and get the vvalue where we transistion to using derived datatypes. 2019-10-07 17:22:51 -04:00
Allen Byrne
ba974c031d OESS-29 Update HD prefix mostly 2019-08-24 14:07:33 -05:00
Quincey Koziol
fed17ed383 HDFFV-10625 -- Implemented a process-0 read and then broadcast for collective read of full (HS_ALL), contiguous, atomic datasets by all the processes in the file communicator. 2019-01-07 16:55:59 -06:00
Richard Warren
1a3beaadce Unify the test (t_bigio.c) between hdf5_1_10 and develop 2018-03-12 16:17:10 -04:00
Richard Warren
22baab211d Add commentary around calling H5Screate_simple with a single element 2017-08-28 20:05:52 -04:00
Richard Warren
f84af6ecc6 Fix the t_bigio test so that it runs on 32bit machines 2017-08-15 09:17:04 -04:00
Richard Warren
32b0d6ca9f Fix up the ExpressMode check for skipping slow running tests. 2017-07-10 18:20:39 -04:00
Richard Warren
0c4c562cc5 Include code fixes and additional modifications pointed out by code reviewers 2017-07-10 16:17:26 -04:00
Richard Warren
47a4cd816c Commit changes needed for pull request 2017-07-05 15:53:19 -04:00