* commit '5ad3891d9b861593ebe25d540bed2d913eb83aba':
Remove ' ' (typo).
Code improvement
Removed an extra "using" statement
Adding documentation
More changes to align with incoming selection improvements.
Added C++ wrapper for H5Ovisit2
Adding a C++ wrapper
HDFFV-10586 and HDFFV-10588
* commit '25cd1ab02b9ddaf58a4f5422f4ab4fde411e050a':
Added test for HDFFV-10588
Fixed HDFFV-10684
Fixed HDFFV-10586 and HDFFV-10588 Description: HDFFV-10586 CVE-2018-17434 Divide by zero inh5repack_filters Added a check for zero value HDFFV-10588 CVE-2018-17437 Memory leak in H5O_dtype_decode_helper This is actually an Invalid read issue. It was found that the attribute name length in an attribute message was corrupted, which caused the buffer pointer to be advanced too far and later caused an invalid read. Added a check to detect attribute name and its length mismatch. The fix is not perfect, but it'll reduce the chance of this issue when a name length is corrupted or the attribute name is corrupted. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1010test)
* commit 'b02de315b93ac29d2483a91d526b110a25073505':
NNSA Tri-LabsTRILAB-98: Another two test cases out.
NNSA Tri-Labs TRILAB-98: Taking out a few more test cases.
NNSA Tri-Labs TRILAB-98 dt_arith and cpp_testhdf5 tests fail on sierra.llnl.gov: According to the group decision, simply provide a macro to disable some failing test cases on sierra (IBM power9 cpu). All failing cases involve long double data type.
the message type until we've verified we understand the message type.
Reduce size of H5O_msg_class_g to *not* include space for
H5O_BOGUS_INVALID. Make bogus messages shareable. Add new bogus
message test with shareable messages to cover the formerly problematic
code. Re-run gen_bogus.c to add this test case and also to fix the
bogus_invalid messages that were no longer H5O_BOGUS_INVLAID due to a
new message class being added in a previous commit. Added comment to
remind developers to run gen_bogus.c when adding a new message class.
src/H5VLpassthru.c, switched to stashing VOL connector ID & info in
API context (in src/H5CX.c, src/H5CXprivate.h, src/H5F.c, src/H5Fint.c, and
src/H5Fefc.c), patched up all sorts of issues in the tests, to make them work
with 'check-vfd' (and 'check-vol' again).
* commit 'd6c2a96ac2f103d90b96d5b39814810e6a31ef99':
Updated the parallel install docs.
Eliminated the need for a separate script variable.
Added a helpful message to the flush script.
Added a shell script so we can run the parallel flush test on OpenMPI.
* commit '3ca19cca5395d79be69209f8d7d0a2b06834a648':
Flipped swapped testing strings.
Added test_vol_plugin.sh to the list of scripts to clean
Fixed a CMake build issue (CMake still doesn't run the VOL plugin tests)
Added more sub-tests to the VOL plugin test.
Added a simple test for registration of VOL connector plugins. Autotools only for right now, but this will be fleshed out in future work.
after deleting attributes in densed storage.
The fix: When deleting attribute nodes from the name index v2 B-tree,
if an attribute is found in the intermediate B-tree nodes, which may be
merged/redistributed in the process, we need to free the dynamically
allocated spaces for the intermediate decoded attribute.
* commit 'b4fe787bb9fe4bfc4709a124df59dd987c9a09d2':
Add test for H5Arename NULL/empty attribute name fix
align H5Arename behavior with H5Arename_by_name
* commit '991996b25122ff010b9af1bbb6cc05be491ce038':
Remove unused CMake files
Update option text
Add reference file to list
HDFFV-10656 remove moved source
HDFFV-10656 Add CHECK_VOL support to CMake
* commit 'e21c1cf7c6ee6dba5dd5bfd1a525227ac1304b53':
Removed H5I_REFERENCE from the library. It has always been unused and has been marked 'deprecated' since 1.10.0. Fixes HDFFV-10252.
* commit 'deb7d2fb9714acc8222815328f71b0aae7e74275':
Use version 2 functions in test file to address compile errors for --with-default-api-version=v16 option.
* commit '4643860aa940fb52da251f7023ec2e48d7d10f34':
HDFFV-10635: Some minor changes to the test case and the comments in the library.
HDFFV-10635: add a test case.
HDFFV-10635: Allowing to write the same variable-length element more than once.
* commit '3e8599591504c95d8a97100b9546174f6132dc97':
HDFFV-10635: Some minor changes to the test case and the comments in the library.
HDFFV-10635: add a test case.
HDFFV-10635: Allowing to write the same variable-length element more than once.
* commit '55e87e5b86aacbb37c57614cd2e869541291caad': (51 commits)
Correct Windows build.
Refactor allocating & releasing pass through wrapper objects.
Fix typo
Remove duplicated comment.
Add a couple of missing prototypes for static routines, along with updating a comment from VOL plugin -> connector.
Switch H5VL_class_value_t from unsigned to int, and add "invalid" ID value.
Correct "make check-vol" regression test target.
Switch H5VL_class_value_t from enum to unsigned integer
Add support for "make check-vol", along with a few minor cleanups, etc.
Refactor infrastructure for setting FAPL information from environment variables during testing, including connecting native, pass-through, and dynamically loaded VOL connectors. Also bring native and pass-through VOL connectors into alignment, removing the "H5VLnative_private.h" header.
Remove example VOL connector, since it's been superceded by the pass-through VOL connector in the src subdirectory.
Add pass-through VOL connector
Update API tracing info for VOL functions and regenerate trace macros for VOL API calls.
Added 'notify' callback for async requests; switched VOL class and info comparison to return comparison value as parameter, so they can return error values; "cancelled" -> "canceled"; switched order of 'wrap_object' and 'free_wrap_ctx' management callbacks.
Add using FAPL from h5_fileaccess() to more tests.
Remove unused test for unimplemented routine.
Switch loc_params to VOL callbacks to pass struct by pointer instead of by value.
Add info_to_str and str_to_info "management" callbacks for serializing and deserializing a connector's info object.
Revert some of the changes to support the original property list value of metadata read attempts.
Add VOL connector info to the flie access property list returned from H5Fget_access_plist(). Also, other misc. cleanups, etc.
...
variables during testing, including connecting native, pass-through, and
dynamically loaded VOL connectors. Also bring native and pass-through
VOL connectors into alignment, removing the "H5VLnative_private.h" header.
This brings the H5VL code in line with the H5I code regarding
naming, parameter order, etc.
Several public API calls were affected by this change.
These changed names to reflect their use with VOL drivers:
H5VLregister() --> H5VLregister_driver()
H5VLregister_by_name() --> H5VLregister_driver_by_name()
H5VLunregister() --> H5VLunregister_driver()
H5VLis_registered() --> H5VLis_driver_registered()
This call was renamed to match H5Iregister(). The order of the first
two parameters also reversed and the object pointer is now const.
H5VLobject_register() --> H5VLregister()
Description:
Applied the typo fixes from user's report.
The previous pull request couldn't be merged because it was too old,
and it was too complicated for me to resolve conflicts.
Platform tested:
Linux/64 (jelly) - very minor
* commit '1da9c5545c013ebc540ba3044810889d4acfa5be':
Restored some unused #defines to the deprecated section of H5Dpublic.h.
Added deprecated symbol wrappers for the H5DOwrite/read_chunk wrappers.
Updated commenting in the H5DO compat test.
Stripped out most of the duplicated functionality in the H5DO compat test.
* Added H5DO compatibility functions. * Changed the offset copy to use an array on the stack. * Yanked some unused #defines.
* Fixed the error tests * Moved common functionality into helper functions
Normalize with trunk prior to update merge
Fixed a warning.
Finished move of H5DOread/write_chunk calls to H5D.
First stage of moving H5DOread/write_chunk() to src/ and making them H5D calls. * Moved H5DOread/write_chunk() to H5Dio.c and renamed to H5D*. * Moved the hl/test/test_dset_opt test to test/ and renamed to direct_chunk. * Moved the hl/test/dectris_hl_perf test to tools/test/perform and renamed to direct_write_perf. * Updated autotools and CMake files.
* commit '2b0fb7e3f1f7da5b23d430702493ed4fb7f87166': (21 commits)
HDFFV-9739 only executes H5E tests in production
Remove link flag from compile command
fix typo
Add release note
Correct attribute location
HDFFV-9739 fix copy testfiles command
HDFFV-9739 remove obsolete test files
HDFFV-9739 dup test file for concurrent tests
HDFFV-9739 Fix autotools script
HDFFV-9739 Change autotools test scripts
Fix typo
HDFFV-9739 Update test reference
Update current windows test machines
HDFFV-9739 Grab err number before API call
HDFFV-9739 Add release note
Adjust test names for concurrent tests
Fix soversion
HDFFV-9739 Fix copy name
HDFFV-9739 factor out tests into separate JUnit
Updated the threadsafety test to use error macros instead of asserts.
...
* commit 'dcc66a4f157ace0858b788228550f3e104df3242': (35 commits)
GGC requires attribute before function
Correct COMPILE defs usage
Add missing module_dir property
Text cleanup
Correct sentence punctuation.
Add release note.
Use set_property for MT flag
Correct command usage
Remove APPEND
Fix typo
Add missing test lib
add missing folder to path
Fix another command revert
Missed a command revert
Revert to old style for LINK_FLAGS gen expr not working
LINK_FLAGS must be separate property sets
Fix link flags syntax
Revert refactor link flags
refactor link flags to interface
Refactor link flags
...
* commit '1f8cb03e11a46f853881f45dac18eff2dd68401e':
Fix errors in Makefile.am files that cause "make check" to repeat test, even when there are no changes to source files. (Also add a ggenerated script to the list of files cleaned up on 'make distclean')
Further minor cleanups
Checkpoint normalization against incoming hyperslab / selection / dataspace improvements.
them H5D calls.
* Moved H5DOread/write_chunk() to H5Dio.c and renamed to H5D*.
* Moved the hl/test/test_dset_opt test to test/ and renamed to
direct_chunk.
* Moved the hl/test/dectris_hl_perf test to tools/test/perform
and renamed to direct_write_perf.
* Updated autotools and CMake files.
* commit '3211e907f4f9349ba7510d70cfbcc6ee36d99c58':
Remove vestiges of H5_DEBUG_BUILD macro, switching it to the more standard H5CX_DEBUG form.
Minor warning cleanup while working on VOL issues.
* commit '048ae59d2970dd21810577c999f756c028b6faaf':
Correct errors with non-"instrumented library" builds (production & parallel, generally speaking).
Update java error stack tests
Revert using H5MF_sect_small_can_shrink and H5MF_sect_small_shrink for the file's free space manager (and add a comment about them).
Add comment for the file flush when the file low / high bounds are changed after a file is open.
Expanded comments abuot H5CX_t fields.
Add an assert to verify that we don't write when between MPI_Barrier() calls during a flush.
Add comments for internal structs.
Remove redundant 'is_collective' parameter from H5CX_set_loc.
Correct typo in comment.
Revert some tangential code cleanups.
Add API context source files to CMake configuration file.
Corrections for parallel I/O & tests.
Update handling of reporting for breaking collective I/O when the default DXPL is used.
Update encoded DXPLs to reflect changes in properties.
Correct typo for error checking malloc return value.
Refactor H5CX code to reduce duplication.
Cleanup API context function usage.
Add API context interface and use it throughout the library.
* commit '9247388c3d14510341ea3f07847ce2cbb6e44a8e':
Rework new tests into one macro
Added a "won't fix" RELEASE.txt entry for HDFFV-10356.
Fix CMake test names
Fixed typo
Add release note for HDFFFV-10397.
Added a fix for HDFFV-10358.
Fixed documentation Description: - Updated the description of copy constructor for clarification. - Removed unnecessary comments. Platforms tested: Linux/64 (jelly)
Enhancement to the tool h5clear (HDFFV-10360)
Fix for HDFFV-10209 VDS SWMR test failure Free the object header when there are chksum retries.
* commit 'f08b8fa10e7bac5ae26e3b06f938d38ebb3f28e1':
Enhancement to the tool h5clear (HDFFV-10360)
Fix for HDFFV-10209 VDS SWMR test failure Free the object header when there are chksum retries.
Notes for gen_bounds.c
* commit '8155dba8d7cb8dbe2532c17c7ea5a27f52e3095b':
Improve code Description: Added notes and changed argument to H5Fcreate to clarify the latest situation Platforms tested: Linux/64 (jelly)
tests for version bounds.
* commit 'f05f9d4cffab5e008c67e19034c1b248e1b01b3c':
Miscellaneous test fixes Description: - dtypes.c: added the use of highest version of nested datatypes to verify the datatype's version. - miscellaneous typos Platforms tested: Linux/64 (jelly) Darwin (osx1010test)
Added h5repack tests Description: Added tests SUPERBLOCK and INVALIDBOUNDS, composed by ADB. Platforms tested: Linux/64 (jelly) - cmake
Added bounds_latest_latest.h5
Misc improvement Description: - Added test file for h5repack test VERIFY_INVALIDBOUNDS - Updated MANIFEST - Removed unnecessary header file in test - Update h5repack script to copy the new file to the test location Platforms tested: Linux/64 (jelly) Darwin (osx1010test)
Improving tests Description: - Added test for version bounds with nested datatypes - Added script for additional version bound test in h5repack - Cleaned up tests for consistency - Removed extra included header files Platforms tested: Linux/64 (jelly) Linux/64 (moohan) Darwin (osx1010test)
Description:
- dtypes.c: added the use of highest version of nested datatypes to
verify the datatype's version.
- miscellaneous typos
Platforms tested:
Linux/64 (jelly)
Darwin (osx1010test)
Description:
- Added test file for h5repack test VERIFY_INVALIDBOUNDS
- Updated MANIFEST
- Removed unnecessary header file in test
- Update h5repack script to copy the new file to the test location
Platforms tested:
Linux/64 (jelly)
Darwin (osx1010test)
The failure occurs when HDF5TestExpress is set to 0.
The check for file size check fails due to persisting free-space when creating the file.
The fix is to set libver bounds (v18, latest) when creating the test file.
Description:
- Added test for version bounds with nested datatypes
- Added script for additional version bound test in h5repack
- Cleaned up tests for consistency
- Removed extra included header files
Platforms tested:
Linux/64 (jelly)
Linux/64 (moohan)
Darwin (osx1010test)
Description:
- Revised and add more variety to version bound tests per review
- Revised gen_bounds.c per review
Platforms tested:
Linux/64 (jelly)
Linux/32 (jam)
Darwin (osx1010test)
