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2966 Commits

Author SHA1 Message Date
Dana Robinson
1e9354bcf5 Merge branch 'develop' into windows_open 2017-05-31 15:07:49 -07:00
Dana Robinson
57f0a296c0 Minor warning fix. 2017-05-25 10:25:30 -04:00
Dana Robinson
291b107d4d Minor warning fixes in the tools. 2017-05-25 09:47:20 -04:00
Dana Robinson
18ae45027c Fixed additional minor warnings. 2017-05-25 08:42:18 -04:00
Dana Robinson
946fd98b8d Fixed many minor warnings. 2017-05-25 06:45:53 -04:00
Allen Byrne
0f81f23d69 HDFFV-8611 add autotools test 2017-05-22 13:55:15 -05:00
Allen Byrne
60cfdf138c Remove obsolete function 2017-05-22 13:24:53 -05:00
Allen Byrne
cdcef539a3 HDFFV-8611 change h5repack to save the root group creation order 
Added test and new arguments to control the the input file parsing.
 2017-05-22 13:10:40 -05:00
Allen Byrne
973aebe25f Add debug trace commands 2017-05-19 11:35:07 -05:00
Allen Byrne
e60bf13c76 HDFFV-9055 Correct file generator 2017-05-18 16:29:52 -05:00
Allen Byrne
fcc56184f1 Whitespace 2017-05-17 15:09:13 -05:00
Allen Byrne
71c223c082 Move execeutable command after declaration 2017-05-17 13:09:13 -05:00
Allen Byrne
23d9fe2649 HDFFV-9055 add test files 2017-05-17 10:06:17 -05:00
Allen Byrne
3ee87f72ad HDFFV-9055 Handle H5T_ARRAY types 
Create variables just for diff_array function
Whitespace updates
 2017-05-16 15:58:17 -05:00
Allen Byrne
71637634ac HDFFV-9995 Clarify help text 2017-05-16 10:16:44 -05:00
Allen Byrne
4f0b92bdd5 HDFFV-10128 Fixed string length with no null fixed 2017-05-16 09:28:49 -05:00
Allen Byrne
56c3ec9820 HDFFV-10128 add test to check null term 
Test is another dataset
 2017-05-15 12:33:58 -05:00
Allen Byrne
7078993d63 HDFFV-10128 Fix null term strings 2017-05-12 14:40:39 -05:00
Allen Byrne
0cb8152b8e HDFFV-10186 Need to pull the flag into the script 2017-05-11 09:03:21 -05:00
Allen Byrne
ec0935a924 HDFFV-10186 xml test also needs endianess aware files 2017-05-10 12:45:06 -05:00
Allen Byrne
7dc0c79c54 HDFFV-10186 - h5tools_str_append is not printf 2017-05-10 12:20:15 -05:00
Allen Byrne
dd45c3694f HDFFV-10186 braces formatting 2017-05-10 11:09:55 -05:00
Allen Byrne
772e6e9a7f Fix reference file contents 2017-05-10 11:00:37 -05:00
Allen Byrne
445c805a4c HDFFV-10186 Add endianess to bitfield and fix tests 2017-05-10 10:59:13 -05:00
Allen Byrne
e4e261173f HDFFV-10186 more whitespace formatting 2017-05-10 10:12:19 -05:00
Allen Byrne
4f36f613a6 HDFFV-10186 Whitespace change 
Mostly tabs to spaces
Remove Modifications comments
 2017-05-09 16:52:05 -05:00
Allen Byrne
5263bc9029 HDFFV-10186 Whitespace changes 
Mostly replacing tabs with spaces
Removed empty mod sections
 2017-05-09 10:41:00 -05:00
Allen Byrne
6d0d9d46da Fix typo in name of ddl file in command 2017-05-05 16:54:28 -05:00
Allen Byrne
9076e74d38 Fix name to copy 2017-05-05 10:05:59 -05:00
Allen Byrne
c90f72a0d4 Correct name of file to copy 2017-05-04 16:42:32 -05:00
Allen Byrne
412f68103e Use correct var types for data 2017-05-04 13:32:58 -05:00
Allen Byrne
006e568021 Remove duplicate defines 2017-05-04 11:41:47 -05:00
Allen Byrne
bcaf579ac4 Add test file to list and fix test typo 2017-05-02 15:54:40 -05:00
Allen Byrne
7608b264e4 Make test scripts fail if result files are created 2017-05-02 12:36:02 -05:00
Dana Robinson
734aebc395 Rework of the POSIX file open permissions and macros to clean up 
HDopen() calls.

Also fixed a minor const warning in the core VFD.
 2017-04-28 18:13:22 -04:00
lrknox
be49a94226 Comment out install-exec-hooks to remove libdynlib* files. Allen did 
the same for hdf5_1_10 and hdf5_1_10_1 because the hooks don't reliably
work.  In the develop branch they are causing make install failures
because the autotools' install commands sometimes attempt to chmod these
files when they no longer exist.
 2017-04-28 16:37:22 -05:00
Dana Robinson
d3b664b6a7 Changed the Windows POSIX open() file permissions to be correct 
according to MSDN. Partial fix for HDFFV-9630.
 2017-04-28 08:11:29 -07:00
Larry Knox
89fbe00dec Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to hdf5_1_10 
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
  Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
  Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
  Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
  Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
 2017-04-25 16:05:36 -05:00
Larry Knox
3750e8ac7c Merge pull request #449 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop 
* commit '7bd516f2ead21e8470cc25c0b664ad6b56c723a0':
  Our best effort to build dynamic plugin tests and not install them with "make install".  It seems the install-exec-hook doesn't remove the last to be installed.
  Add targets for plugin test libraries to avoid linking to external libs.
 2017-04-21 15:32:13 -05:00
lrknox
7bd516f2ea Our best effort to build dynamic plugin tests and not install them with 
"make install".  It seems the install-exec-hook doesn't remove the last
to be installed.
 2017-04-21 14:32:45 -05:00
Allen Byrne
abdb412d50 file already in list 2017-04-21 11:04:27 -05:00
Allen Byrne
9a7b106d37 Correct test options to match autotools script 2017-04-20 14:57:36 -05:00
Allen Byrne
7ee229bced Updates to CMake for the changes in the autotools script 2017-04-20 13:45:35 -05:00
Vailin Choi
43e03c548a Modifications based on review comments from pull request. 
Made changes according to review comments and discussion with Allen.
 2017-04-19 22:51:39 -05:00
Vailin Choi
53f1450f9d Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop) 
* commit '8f34c3cfd46054f6478b34df6af324c353e44d62':
  Update tool dyn lib
  LDFLAGS module forces .so lib to be built on osx instead of .dylib
  java jni lib also needs to avoid the version-info
  HDFFV-10170 undo patch
  Add plugin options for libs
 2017-04-19 16:06:25 -05:00
Allen Byrne
62770c6432 Update tool dyn lib 2017-04-18 14:23:35 -05:00
Vailin Choi
b7aeefbbc9 Fix for DAILYTEST-259 h5clear test failure 
Deposit the test files in test/misc/testfiles for testh5clear.sh to use instead of depending on h5clear_gentest.
Tested on kituo, osx1010test, quail, platypus and ostrich.
 2017-04-18 13:24:00 -05:00
Allen Byrne
0b226bd28b HDFFV-10170 undo patch 2017-04-18 11:04:22 -05:00
Allen Byrne
9b234d74bb Add plugin options for libs 2017-04-18 10:38:14 -05:00
Allen Byrne
9363223fb6 HDFFV-10170 chnage test libs to noinst type 2017-04-13 13:37:56 -05:00
Quincey Koziol
46c9ab600d Minor style cleanups 2017-03-22 10:54:25 -07:00
Quincey Koziol
9c606c3d90 Revert "Switch h5clear for cache images to use existing H5Pget_cache_image_config()" 
This reverts commit dd5105fc9912c77f6d6074700d83e5e8282e86c9.
 2017-03-22 09:58:40 -07:00
lrknox
7e7121fec6 Remove incorrect " marks added to java files by bin/h5vers. 
Pull version from configure for version test in h5repack_plugin.sh.in
 2017-03-21 10:57:40 -05:00
lrknox
cd8ec2cc44 Extend h5vers to update version strings in java files and h5repack 
version test expected output file.

Update version on develop branch to 1.11.0.

 Please enter the commit message for your changes. Lines starting
 2017-03-20 17:14:16 -05:00
Allen Byrne
94850f37cb Use global variable for test command - update reference 2017-03-20 09:59:17 -05:00
Quincey Koziol
a16d142f80 Switch from HDatoll to HDstrtoll, for Windows compatibility. 2017-03-16 08:38:24 -07:00
Quincey Koziol
0313cbb91d Final merge of page buffering branch to develop 2017-03-13 21:30:37 -07:00
Allen Byrne
cceddc6b4f Correct result code for strings test 2017-03-03 15:26:06 -06:00
Allen Byrne
eebe786cca Add extension to filename 2017-03-03 15:10:40 -06:00
Allen Byrne
9e75847d67 HDFFV-10128 fix string compare and add tests 2017-03-03 14:47:59 -06:00
Allen Byrne
0df90f9f79 Merge pull request #321 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop 
* commit 'f4dd30f41ccee7bcd97fba065573c5201cbcc743':
  Update CMake formatting
  Update CMake files and formatting
  HDFFV-10120 verify nozlib checking with tools tests
  cmake non-code typo
 2017-03-02 12:11:19 -06:00
Quincey Koziol
5df52404bc Misc. small cleanups to sync against incoming page buffering changes. 2017-03-02 06:24:46 -08:00
Allen Byrne
2562ec3a4b Update CMake files and formatting 2017-03-01 14:47:53 -06:00
Allen Byrne
0383597463 HDFFV-10120 verify nozlib checking with tools tests 2017-03-01 11:46:30 -06:00
Quincey Koziol
101fa7af8e Cleanups and normalizations against incoming page_buffering changes. 2017-02-19 18:28:52 -08:00
Allen Byrne
08b5edca0b Fix parallel h5diff test comapare 2017-02-14 14:59:57 -06:00
Allen Byrne
5e87ada674 Set depends test dependency for parallel h5diff 2017-02-14 13:51:34 -06:00
Quincey Koziol
a28b65bb9e Clean up whitespace 2017-02-07 09:18:57 -08:00
Allen Byrne
d1292691c4 HDFFV-9875 enable static pdb and cleanup exports 2017-02-03 12:41:30 -06:00
Allen Byrne
177c050891 HDFFV-9875 Fix target exports and add static tools pdb files 2017-02-02 12:09:10 -06:00
Allen Byrne
0668e1ba1e HDFFV-10123 fix shared name 2017-02-01 11:30:29 -06:00
Allen Byrne
7b85399dff HDFFV-10123 Add SHARED tools 2017-02-01 11:15:38 -06:00
Allen Byrne
e4b568fffc HDFFV-10046 add shared versions of tools for plugin filters 2017-01-31 15:50:21 -06:00
Allen Byrne
f1410b6c64 HDFFV-10046 build a shared version of h5repack tool for plugins 2017-01-31 15:33:10 -06:00
Dana Robinson
081955fdd1 Additional minor changes from revise_chunks->develop. 2017-01-27 16:46:09 -05:00
Allen Byrne
d627cd29bd HDFFV-10046 Fix windows parse error 2017-01-24 16:41:45 -06:00
Allen Byrne
da08f71ea1 HDFFV-10112 correct form of comments 2017-01-23 08:49:54 -06:00
Allen Byrne
7e73366e91 HDFFV-10118 fix data 2017-01-20 16:40:40 -06:00
Allen Byrne
eb42e42ea4 HDFFV-10118 change h5ls to not display extra info 2017-01-20 15:53:45 -06:00
Allen Byrne
c3463d800d HDFFV-10118 fixed plugin tests for tools 2017-01-20 14:23:41 -06:00
Allen Byrne
a8e9126054 Fix script varnames 2017-01-18 09:46:50 -06:00
Allen Byrne
ee4c57cc08 Chnage test dir to avoid parallel test collisions 2017-01-18 08:51:32 -06:00
Allen Byrne
a8e4f6426e Add autotools version of plugin tests for UD filters 2017-01-17 17:11:27 -06:00
Allen Byrne
7d7a66ac82 HDFFV-9994 add h5ls reference file to copy 2017-01-17 14:18:06 -06:00
Allen Byrne
d8dfb7e63a HDFFV-9994 - correct reference file 2017-01-17 14:12:01 -06:00
Allen Byrne
406db26f51 HDFFV-9994 add UD tests for tools 2017-01-17 13:46:11 -06:00
Allen Byrne
be260bbf75 Add goto error for dataset read failure. Fixed comments 2017-01-17 09:55:15 -06:00
Allen Byrne
556ff06975 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop) 
* commit 'bd85e57904f1f943774bb99ea5e8b0d074db0edb':
  tools/test/h5diff/testh5diff.sh.in:          Add code to delete copies of test .h5 files copied from          tools/testfiles/vds to tools/test/h5diff/testfiles when running          "make check" for an in-source build.
 2017-01-13 10:57:26 -06:00
lrknox
8452976de5 tools/test/h5diff/testh5diff.sh.in: 
Add code to delete copies of test .h5 files copied from
         tools/testfiles/vds to tools/test/h5diff/testfiles when running
         "make check" for an in-source build.

    tools/test/misc/testh5repart.sh.in:
         Change the name of the temporary test directory from "testfiles"
         which is also used for 2 h5mkgrp test files under source control to
         "testrepart" to avoid deleting source controlled files when running
         "make check" in the source directory.

    Fix test scripts that remove source-controlled files during "make check" when run in-source.
    Fix test scripts that don't remove test files because they add files to test directories but don't remove them if the build directories are the same as the source directory.

    Fix any test source file or Makefile.am files for tests that leave data files are removed by neither "make check" nor "make distclean".
 2017-01-12 22:20:11 -06:00
Allen Byrne
ee485247b7 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop) 
* commit '8b4c9f848d63351c85cab3a5b2034f8e7e1a29db':
  h5format_convert was not built (missing from subdirs in tools/src and         tools/test Makefile.ams) but created dependencies that were not cleaned up by make clean and make distclean.
  Create h5repack convenience library for common code used by h5repack tool and h5repacktst.  Fixes broken distclean.
  Added an --enable-developer-warnings option to configure so users can ignore -Wsuggest-attribute warnings and other noise that doesn't indicate poor code quality.
 2017-01-11 14:24:09 -06:00
Allen Byrne
244faaa0d0 HDFFV-10094: upgrade cmake command conventions 
Also converted tests to use macros
 2017-01-11 14:02:34 -06:00
Larry Knox
c37826171d Merge pull request #245 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop 
* commit '630d668954f56f5138f2bffe3994e2c1da2e3f5c':
  h5format_convert was not built (missing from subdirs in tools/src and         tools/test Makefile.ams) but created dependencies that were not cleaned up by make clean and make distclean.
  Create h5repack convenience library for common code used by h5repack tool and h5repacktst.  Fixes broken distclean.
 2017-01-10 23:02:46 -06:00
Allen Byrne
e1bcae8a6a Update cmake min version and cmake command convention 2017-01-10 17:10:03 -06:00
lrknox
630d668954 h5format_convert was not built (missing from subdirs in tools/src and 
tools/test Makefile.ams) but created dependencies that were not
cleaned up by make clean and make distclean.
 2017-01-10 16:53:38 -06:00
Allen Byrne
09d1314c1d Split VDS files into a separate list 2017-01-10 15:59:01 -06:00
lrknox
584d3743a8 Create h5repack convenience library for common code used by h5repack 
tool and h5repacktst.  Fixes broken distclean.

Tested with h5committest and "make distclean".
 2017-01-10 14:41:25 -06:00
Allen Byrne
b3c2354a1b Corrected return calls from main() 2017-01-05 12:01:45 -06:00
Allen Byrne
cdda9c0a6a Corrected return calls 2017-01-05 12:01:10 -06:00
Allen Byrne
e16bfa859c Fix valgrind memory leak 2017-01-05 09:02:13 -06:00
Allen Byrne
c507554935 Clean up valgrind memory leak 2017-01-05 08:58:58 -06:00
Allen Byrne
7f3b32385c HDFFV-10053: add check for zlib support before running test 2016-12-16 10:41:20 -06:00
Quincey Koziol
57afb68e46 Bring SWMR-related tools changes from revise_chunks to develop. 2016-12-11 11:25:08 -08:00
Dana Robinson
122819fec3 Merge pull request #48 in HDFFV/hdf5 from HDFFV-9407-h5dump-fails-to-print-full-precision to develop 
Merged Kimmy's fix (still needs a test).

* commit 'f76c3b56e1ccf81b16225fa6935adb45ac6d2f38':
  fix the issue of h5dump fails to print full precision
 2016-12-07 16:17:45 -06:00
Allen Byrne
45d817af9c Repair comment chars to C style 2016-11-17 09:28:18 -06:00
Allen Byrne
94f09655cb Correct name of list 2016-11-09 12:39:22 -06:00
Allen Byrne
a2e6cb3c82 Factor out path 2016-11-09 11:55:28 -06:00
Allen Byrne
f9674dfe4e On windows there could be a conflict when two processes try to read the 
same file
 2016-11-09 10:37:04 -06:00
Quincey Koziol
bb6cb6adb0 Code style and warning cleanups, from revise_chunks branch. 2016-11-06 12:08:19 -08:00
Allen Byrne
070362cc93 Fix mktarball errors with Manifest 2016-11-04 09:34:01 -05:00
Quincey Koziol
84787e3085 Uncomment line in test/objcopy.c, clean up whitespace and POSIX call wrapping 
in tools code.
 2016-11-03 08:46:53 -07:00
Allen Byrne
16ba94f5db Fix parallel h5diff option of tool location 2016-11-02 12:21:14 -05:00
Allen Byrne
de57917e58 minor cleanup to utils defines 2016-11-01 16:42:13 -05:00
Allen Byrne
8a323685f8 Add util programs for tests 2016-11-01 16:38:18 -05:00
Allen Byrne
430d10b047 Correct test command line 2016-11-01 16:10:09 -05:00
Allen Byrne
60cb2c8254 refactor repart test to use test dir 2016-11-01 15:48:39 -05:00
Allen Byrne
df13600ae2 Re-merge HDFFV-9942 to new folder structure 2016-10-27 11:03:26 -05:00
Allen Byrne
67084271cb Correct dir reference 2016-10-27 10:55:22 -05:00
Allen Byrne
11093646db Split tools code - remove old change 2016-10-27 10:19:59 -05:00
Allen Byrne
2c6dbbf212 Split tools into src and test - add folders 2016-10-27 10:06:00 -05:00
Allen Byrne
5b562d9ce9 Split tools into src and test - remove folders 2016-10-27 10:04:42 -05:00
Allen Byrne
b34423f620 Split the code into src and test 2016-10-27 10:03:22 -05:00
Allen Byrne
5dfe4b6de7 Merge pull request #3 in ~BYRN/hdf5_adb from bugfix/HDFFV-9942-verify-standalone-perform to develop 
* commit '9a4ac501c1bd1f27bde1fc2acbc67bed74ff38ff':
  Add defines missing on OSX
  Merge includes from sio file
 2016-10-21 15:20:42 -05:00
Allen Byrne
0a27add8d7 Change return statement format. 2016-10-21 14:21:08 -05:00
Allen Byrne
9a4ac501c1 Add defines missing on OSX 2016-10-21 14:11:46 -05:00
Allen Byrne
3543f58f25 remove unneeded defines 2016-10-21 11:31:46 -05:00
Allen Byrne
8fd2eb8287 Merge includes from sio file 2016-10-19 17:02:30 -05:00
Allen Byrne
8e0674691a Add new testlib to copy 2016-10-19 12:10:45 -05:00
Allen Byrne
a8883cf07b Correct multiple lib setting 2016-10-18 12:52:32 -05:00
Allen Byrne
7ea09c9292 HDFFV-9996: Test file to verify that that multiple params are parsed 2016-10-18 12:14:25 -05:00
Allen Byrne
c3cea7f96e Add missing EXPORT tag in INSTALL command 2016-10-17 09:52:00 -05:00
Allen Byrne
321db89a65 Remove test only tools from exports 2016-10-14 13:13:25 -05:00
Allen Byrne
fabfa3c1f4 Fix typo 2016-10-14 13:10:18 -05:00
Allen Byrne
3ee36553b9 Add support for namespace and add tools to binaries config 2016-10-14 11:22:22 -05:00
Allen Byrne
ec991ed4b8 Fix missing defines for standalone perf 2016-10-03 17:07:21 -05:00
Allen Byrne
9fd74f83e6 Remove hanging property set 2016-10-03 15:45:31 -05:00
Allen Byrne
031633c479 Revert clear objects for testfile removal 2016-10-03 15:42:31 -05:00
Allen Byrne
dd9caf37d2 Merge test output file clearing into runTest.cmake 2016-10-03 15:34:11 -05:00
Allen Byrne
869ef118e9 Move clear-objects inside runTest 2016-10-03 14:50:41 -05:00
Quincey Koziol
30ca70b096 Merge pull request #46 in HDFFV/hdf5 from ~KOZIOL/hdf5:features/warning_cleanups to develop 
* commit '5a7880183025f56421cf6f2274d9f1ac36f59641':
  Clean up hardcoded constants and check return values better.  (Comments from group code review)
  Description:     Cleanups from Dana's review.
  Description:     Further warning cleanups: from 667 warnings to 503.
 2016-09-29 15:19:35 -05:00
kmu
f76c3b56e1 fix the issue of h5dump fails to print full precision 2016-09-27 14:04:19 -05:00
Quincey Koziol
fa66428a6d Description: 
Further warning cleanups: from 667 warnings to 503.
 2016-09-27 10:29:16 -07:00
Allen Byrne
a25cf22663 Correct clear objects working dir 2016-09-21 12:12:37 -05:00
Allen Byrne
203b2b2e75 Windows returns -1 instaed of 255 as on linux for the test 2016-08-30 10:27:07 -05:00
Allen Byrne
b947f7e911 [svn-r30321] HDFFV-9974: Correct parsing of UD filter parameters. 
Verified by user, who reported issue.
 2016-08-25 13:57:27 -05:00
Vailin Choi
169014d154 [svn-r30319] Fix for daily test failure on emu -m64 for the checkin #30310. 
Tested on emu (-m64 & -m32), platypus, mayll, moohan, osx1010test, quail, kituo, ostrich, kite.
 2016-08-24 15:12:18 -05:00
Allen Byrne
42d55a0f7d [svn-r30318] whitespace cleanup 2016-08-24 14:50:39 -05:00
Allen Byrne
2d6dd8ea64 [svn-r30317] Whitespace cleanup 2016-08-24 14:47:56 -05:00
Vailin Choi
ae18cf66d8 [svn-r30310] Fix daily test failure for previous checkin #30308. 
Tested on platypus and mayll.
 2016-08-21 19:21:20 -05:00
Vailin Choi
c8af99f530 [svn-r30308] Fix for HDFFV-7991--error when copying dataset with attribute which is a compound datatype consisting of 
a variable length string.
Tested on mayll, platypus, osx1010test, emu, kituo, kite, quail, moohan, ostrich.
 2016-08-19 15:58:16 -05:00
Quincey Koziol
f40381b0ea [svn-r30285] Description: 
More warning cleanups, bringing the build down to 25 unique types of
warnings, with 550 warnings in 122 files (down from 28, 770, and 134).

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial & parallel
    (h5committest forthcoming)
 2016-08-13 04:23:53 -05:00