Commit Graph

243 Commits

Author SHA1 Message Date
James Laird
a9397f3f51 [svn-r12911] Backed up to previous versions of automake and libtool. Hopefully this will fix
issues on tg-login3.

bin/reconfigure should still work on both heping/mir and kagiso.
2006-11-14 11:15:07 -05:00
Quincey Koziol
3f25d6c6d1 [svn-r12895] Description:
Add new H5Lget_val_by_idx() routine & tests.

    Also includes most of changes for H5Ldelete_by_idx() routine.

Tested on:
    Mac OS X/32 10.4.8 (amazon)
    FreeBSD/32 4.11 (sleipnir)
    Linux/32 2.4 (heping)
    Linux/64 2.4 (mir)
    AIX/32 5.? (copper)
2006-11-13 10:00:06 -05:00
James Laird
911e79b273 [svn-r12887] A fix for linking issues.
Should disable linking against shared libraries in Fortran for compilers that
don't support shared libraries.

Should also fix problem when the wrong Fortran file extension was specified.

If these changes don't solve the Daily Test issues, I'll look at backing out
the autotool version change until I have time to fix them.

Tested on heping, kagiso, juniper.
2006-11-10 14:56:04 -05:00
James Laird
a9350e86f0 [svn-r12882] Changed bin/reconfigure to work on kagiso as well as on AFS Linux machines.
Updated to the latest versions of autotools.

Tested on kagiso, heping, and juniper.  Let me know if you have any problems.
2006-11-08 13:39:15 -05:00
Quincey Koziol
db3632444b [svn-r12871] Description:
Clean up a couple of warnings...

Tested on:
    Linux/64 2.6 (chicago2)
2006-11-06 21:48:39 -05:00
Quincey Koziol
5adf1ee1ba [svn-r12864] Description:
Changed H5Lget_linkval() to H5Lget_val(), per our design discussion last
Friday afternoon.

Tested on:
    Linux/32 2.6 (chicago)
2006-11-06 12:05:16 -05:00
Quincey Koziol
8b52aae45d [svn-r12835] Description:
Change H5Lget_linkinfo() to H5Lget_info() to better align with coming API
changes.

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-10-30 19:45:31 -05:00
James Laird
c19a43d854 [svn-r12831] Changed the API for "unpacking" an external link value to take the size of
the linkval buffer, per Elena and Frank's suggestions while revising
the documentation.  Added error checking using this size, as well as a
couple of tests.

Tested on juniper, kagiso, and sol.
2006-10-30 15:24:19 -05:00
James Laird
de383a7edf [svn-r12741] Added support for direct I/O to check-vfd. The direct VFD is only tested
if it is enabled.

Added Direct VFD status to the configure summary.

Removed a line left over from pablo support.  Oops!
2006-10-10 15:47:24 -05:00
Quincey Koziol
14dcb6db33 [svn-r12736] Description:
Add "use the latest format" support for dataspace object header encode/
decode routines and clean up format a bit for the latest format (new to 1.8.x
releases)

    Remove storing 'perm' parameter for array datatypes in memory and the file,
and add test to make certain that if any user applications are attempting to
store them, we get some reports back.  (Should be unlikely, since the RefMan
says that the parameter is not implemented and is unsupported).
    Carry those changes into the tests, etc.

    Clean up a bunch more compiler warnings.

Tested on:
    FreeBSD/32 4.11 (sleipnir) w/threadsafe
    Linux/32 2.4 (heping) w/FORTRAN & C++
    Linux/64 2.4 (mir) w/enable-1.6-compat
2006-10-08 23:18:18 -05:00
James Laird
e5f0444b3a [svn-r12715] Incorporated a user-submitted patch to better detect the 'tr' utility
and quote its arguments.  Also checks for the 'socket' library on
Solaris.

If this patch passes the Daily Tests and makes the user happy, I'll
port it back to the 1.6 branch.

Tested on mir and sol.
2006-10-03 17:41:34 -05:00
Quincey Koziol
a6f6462541 [svn-r12700] Alert:
File format is not stable, don't keep files produced!

Description:
    First stage of checkins modifying the format of groups to support creation
order.  Implement "dense" storage for links in groups.

    Try to clarify some of the symbols for the H5L API.

    Add the H5Pset_latest_format() flag for FAPLs, to choose to use the newest
file format options (including "dense" link storage in groups)

    Add the H5Pset_track_creation_order() flag for GCPLs, to enable creation
order tracking in groups (although no index on creation order yet).

    Remove --enable-group-revision configure flag, as file format issues are
now handled in a backwardly/forwardly compatible way.

    Clean up lots of compiler warnings and other minor formatting issues.

Tested on:
    FreeBSD/32 4.11 (sleipnir) w/threadsafe
    Linux/32 2.4 (heping) w/FORTRAN & C++
    Linux/64 2.4 (mir) w/enable-v1.6 compa
    Mac OSX/32 10.4.8 (amazon)
    AIX 5.3 (copper) w/parallel & FORTRAN
2006-10-02 05:24:03 -05:00
Albert Cheng
66d2d26f5d [svn-r12634] Purpose:
Code cleanup.

Description:
Removed argc and argv from the function arguments of h5tools_get_fapl() and
h5tools_fopen().  They were used to call MPI_Init() which was no longer
needed.

Tested:
heping (serial and parallel).
2006-08-27 19:55:27 -05:00
James Laird
9d4229713e [svn-r12608] Checked in External Link C examples.
Since these examples need to follow filesystem paths, the Makefiles need
to create directories in the examples directory; added this to the
Makefile.am.

Tested on Windows, mir, juniper
2006-08-22 11:22:43 -05:00
James Laird
e5bc52d890 [svn-r12584] Mentioned VFD in test output to make it easier to tell which VFD is being used
when a test is run.

Running reconfigure also regenerated error header files (because someone edited
them manually?).
2006-08-17 09:18:03 -05:00
Albert Cheng
cce17a2274 [svn-r12535] Added a new test for testing error handling of non-existing file.
nosuchfile.ls is the expected output.

Tested: tg-ncsa and heping.
2006-08-03 22:59:24 -05:00
James Laird
3e755623cb [svn-r12528] Added User-Defined links to the library.
Users can create external links using H5L_create_external().  These links
point to an object in another HDF5 file.  Users can alter the behavior of
external links or create new kinds of links by registering callbacks
using the H5L interface.

Added tests, tools support, etc.

Also a number of other, minor changes have been made (some restructuring of
the H5L interface, for instance).

Additional documentation and examples are forthcoming.
2006-08-02 18:41:53 -05:00
James Laird
beb04ae817 [svn-r12519] Fixed "make check-vfd"
"make check-vfd" will now run all tests in the test directory with different
file drivers (at least, all of those tests that use the testing framework's
FAPL).  Tests that fail will be skipped.

This is not a perfect fix, but is better than nothing.

Along with this change, check-vfd should be added to the Daily Tests.
2006-07-31 14:46:16 -05:00
Quincey Koziol
7be3afb278 [svn-r12440] Purpose:
Code cleanup

Description:
    Trim trailing whitespace in Makefile.am and C/C++ source files to make
diffing changes easier.

Platforms tested:
    None necessary, whitespace only change
2006-06-27 09:45:06 -05:00
James Laird
64b5d95251 [svn-r12431] Purpose:
Configuration feature

Description:
'make install' now tests both static and shared libraries if both are installed.

Solution:
Previously, shared libraries were only tested when static libraries were not installed.
Also cleaned up line in commence.am that was including HL library in all Makefiles.

Platforms tested:
mir (Makefile change only)
2006-06-21 18:15:08 -05:00
James Laird
a31e264f89 [svn-r12411] Purpose:
Bug fix - bugzilla #552

Description:
On Cray X1, trying to use : as an argument confused the system.

Solution:
Added a test in configure to see if : as an argument is bad.
If so, skipped the test.

Platforms tested:
mir, Cray X1 (change to configure only)
2006-06-13 16:21:14 -05:00
Albert Cheng
56c0a0f993 [svn-r12358] Purpose:
Bug fix.

Description:
The ${TR}, though avoid the error, is inconvenient.  It is needed
because configure.in use the char range in the style of 'a-z'.
The other style of '[a-z]' is more commonly accepted by all tr
but autoconf tends to strip away [], making the syntax rather
clumsy.

Solution:
Learned from autoconf that it avoids the use of character range
by just spell all the letters out.  Changed our tr commands to
use those variables defined by autoconf.  Also removed the
definition of ${TR} since it will cause inconsistancy when
autoconf also use plain 'tr' in its generated code.

The Makefile.in are changed because the elimination of ${TR} from
configure triggered its removal from all Makefil.in.  That is okay
because ${TR} is not used at all in Makefile.

Platforms tested:
h5committested. (sol failed to connected). also tested in shanti
using both /usr/ucb/tr and /bin/tr (the bad one before.)

Misc. update:
Updated both INSTALL and RELEASE files.
2006-05-19 07:22:07 -05:00
James Laird
91e56dc68d [svn-r12295] Purpose:
Several bug fixes

Description:
Added config file for Cray X1 (previous file was misnamed)
Simplified some code in hyperslab.c test that seemed to have been
confusing compiler on Cray X1.
Fixed typo in config/commence.am
Cleaned up hl/src/Makefile.am

Solution:
All four fixes should be straightforward.  The failure on Cray was
very difficult to debug, but involved arithmetic errors.
This change seems to fix it.

Platforms tested:
heping, copper, sol, some Cray X1 (more testing when system comes back up)
2006-04-21 14:21:24 -05:00
Quincey Koziol
2521c4084c [svn-r12254] Purpose:
Anti-feature

Description:
    Revert changes to H5G_stat_t struct, to make it compatible with the 1.6.x
branch again.  The information that was added to the H5G_stat_t struct will
be reported through other API routines.

Platforms tested:
    FreeBSD 4.11 (sleipnir) w/C++
    Linux 2.4/64 (mir) w/C++ & Fortran
    Solaris 2.9 (shanti)
2006-04-14 17:21:54 -05:00
Pedro Vicente Nunes
bc66efc788 [svn-r12229] Purpose:
new feature

Description:
1) separated the HL library into "public" and "private" header files, with the same caracteristics as the basic library
2) added the public headers to hdf5.h (with a conditional include macro, defined in configure.in)
3) added the path to HL in all Makefile.am 's , because of the inclusion in hdf5.h

Solution:

Platforms tested:
linux 32, 64
AIX
solaris
with fortran and c++

(one packet table example fails)

Misc. update:
2006-04-12 16:21:38 -05:00
Pedro Vicente Nunes
723e738e04 [svn-r12196] Purpose:
bug fix

Description:
h5ls was not printing root group attributes

Solution:

Platforms tested:
linux 32, 64
solaris

Misc. update:
2006-04-03 15:08:15 -05:00
Pedro Vicente Nunes
cd25a7690a [svn-r12171] Purpose:
bug fixes

Description:
h5dump/h5ls were not displaying long doubles correctly

Solution:
1) the print datatype functions were incorrectly testing for the valid return value from H5Tequal,
   (TRUE), causing the display of an incorrect name of a dataype in error cases from H5Tequal
2) h5tools_print_str did not have a case for native long double
3) added a file generator for a long double dataset
4) added one script test for the long double data (commented , some sytems don't have a native long double match, and the output differs)
5) added a vms file and h5dump script test


Platforms tested:
linux 32, 64
solaris
AIX

Misc. update:
2006-03-28 16:25:10 -05:00
James Laird
93aa12407f [svn-r12149] Purpose:
Bug fix

Description:
Previous checkin did a bad thing; 'make clean' failed in example directories.

Solution:
Fixed commence.am so that examples no longer break, and fixed a mistake
in conclude.am.

Platforms tested:
heping (minor makefile change)

Misc. update:
2006-03-23 16:26:17 -05:00
James Laird
524d25498f [svn-r12143] Purpose:
Bug fix

Description:
make check-clean didn't clean results of example tests

Solution:
Fixed Makefiles so that check-clean recurses into example directories.
Also a little Makefile cleanup.

Platforms tested:
mir, modi4, heping, copper
2006-03-23 09:22:34 -05:00
Quincey Koziol
56e3f667d6 [svn-r11886] Purpose:
Code cleanup

Description:
    Check in some of the code cleanups from working on the external link
support.  (This doesn't include any of the external link features)

Platforms tested:
    FreeBSD 4.11 (sleipnir)
    Mac OSX.4 (amazon)
    Linux 2.4
2006-01-23 15:46:34 -05:00
James Laird
0f870b0f47 [svn-r11741] Purpose:
Bug fix

Description:
Fortran type generation was broken in two ways.  Fixed both.

Solution:
Firstly, there were a couple of path problems.  Fixed a typo and
specified the full path of a file.
Secondly, the dependencies weren't right when building with HDF5-specific
commands (make lib, make check-s, etc.).  Tweaked dependencies
to fix the problem.

Platforms tested:
mir, modi4, sleipnir
2005-11-18 15:31:53 -05:00
James Laird
4f8ca8e026 [svn-r11738] Purpose:
Configure feature

Description:
Added 'make trace' target.

Solution:
Added tracing to 1.7.  This was done automatically in 1.6, but left out
of 1.7 until now (oops!).
Tracing in 1.7 only happens manually, when the user types 'make trace.'
Tracing automatically requires more framework than it's worth.
I also fixed a couple of tracing bugs and ran trace.

Platforms tested:
mir, sleipnir, modi4

Misc. update:
2005-11-18 10:55:22 -05:00
James Laird
75ea10e5f5 [svn-r11737] Purpose:
Bug fix

Description:
Before this checkin, 'gmake check-s' would fail if there was a file in
the current directory named 'check-s'.
This is fixed under gmake (not sure how to fix for other makes).

Solution:
check, progs, install, etc. are what gmake calls "phony" targets,
which means that no file should be created.  These targets can be
specified by a line of the form
.PHONY: check progs install ...
Automake adds this line for targets it knows about, but HDF5 has a
lot of custom rules.  This checkin adds a .PHONY line for those rules.
I believe that only gmake recognizes the .PHONY line (at least, pmake
doesn't seem to), but a partial solution is better than none.
This error should occur very rarely anyway (the user has to manually
create files with names like 'build-check-s' or '_test').

Platforms tested:
mir, sleipnir, modi4
2005-11-17 13:49:28 -05:00
James Laird
617522e467 [svn-r11646] Purpose:
Bug fix/feature

Description:
Added support for -shlib in h5fc and h5c++.
Made check-install use -shlib when only shared libraries have been installed.

Solution:
h5fc and h5c++ didn't recognize -shlib.  Stole code from h5cc to link against
shared libraries.
When static libraries are disabled, the examples Makefiles will automatically
use the -shlib option to link against shared libraries.  Thus,
--disable-static and make check-install should work together.

Platforms tested:
heping(disable-static, enable-static, fortran, c++), modi4 (disable-static, fortran, c++, parallel, enable-static)
2005-10-31 16:35:49 -05:00
James Laird
91cbcdf42f [svn-r11612] Purpose:
Bug fix

Description:
Failed parallel tests now cause make to exit with an error.

Solution:
Edited config/conclude.am to throw an error if parallel test programs fail.

Platforms tested:
heping, modi4
2005-10-27 17:30:46 -05:00
James Laird
69293e09df [svn-r11602] Purpose:
Bug fix

Description:
Removed detection of pdb from configure.in as a corollary to removal
of pdb2hdf5 tool.


Platforms tested:
mir, modi4
2005-10-24 14:31:06 -05:00
James Laird
87a56d9da2 [svn-r11573] Purpose:
Bug fix

Description:
Changed configure.in to use an environment variable TR to set the path
to the tr utility.

Solution:
There are two kind of tr on Solaris with slightly different syntax.
HDF5's configure relies on the "standard" tr.  Traditionally, HDF5ers
have needed to make sure that the "right" tr was found before the
wrong one in their path; now they can use an environment variable.

Platforms tested:
mir, shanti, sol

Misc. update:
Forgot to update release notes.  Off to do that now.
2005-10-17 16:38:38 -05:00
James Laird
bcf3f797d4 [svn-r11566] Purpose:
Makefile bug fix

Description:
Previously, automake didn't output rules to build perform/mpi-perf or
the test/gen_* programs.
Now these can be built by typing 'make mpi-perf' (or 'make foo') or by
configuring with --enable-build-all.

Solution:
Automake doesn't like having rules for programs it doesn't build.  Tricked
it by having these programs built "sometimes"--whenever the user enables
--build-all.  This should be used mostly for testing and to ensure that
these helper programs compile.

***IMPORTANT***
These programs do *not* currently compile.  When --enable-build-all is used
(not the default), gen_new_fill fails because it uses an old API.  This is
an existing "bug" that has simply been exposed by this checkin.

Platforms tested:
sleipnir, modi4, sol

Misc. update:
2005-10-14 17:52:13 -05:00
Albert Cheng
55c4f63df7 [svn-r11478] Purpose:
bug fix.

Description:
When a parallel test script test fails, make would continue because the
way it was setup inside a for loop.  Fixed it by issuing an exit 1 inside
the loop.

There was also a typo error in the newer command comparision that it
must be $${chkname} in order to be valid.  Also, the test script itself
was not checked in the newer lists.  All fixed.

Platforms tested:
h5committested and also hand tested in heping pp mode.
2005-09-29 00:17:06 -05:00
James Laird
3267458b64 [svn-r11446] Purpose:
Bug fix

Description:
Massaged the newer script and config/conclude.am to make SX6 happy.


Platforms tested:
SX6, sol, mir
2005-09-20 16:46:24 -05:00
Albert Cheng
c0e83899c3 [svn-r11431] Purpose:
New feature.

Description:
Added the time command to the make check target to report time usage
of the execute of each test and test scripts.  This gives us some idea
how long each test takes and some vague idea it is compute bound or
not.

powerpc-ibm-aix5.x:
Change $RUNPARALLEL default setting to allow it being invoked by the
time command.

Platforms tested:
h5committested.
2005-09-17 22:04:28 -05:00
James Laird
ae2a313b5b [svn-r11421] Purpose:
Feature

Description:
Added H5_CFLAGS, etc. to 1.7 branch.
Now compilation flags can be put in H5_*FLAGS and they'll be used when
building hdf5 but not in h5cc.


Platforms tested:
mir, sleipnir, modi4

Misc. update:
2005-09-16 16:26:17 -05:00
James Laird
b656c90c8a [svn-r11420] Purpose:
Bug fix

Description:
Disabled C++ shared libraries for Sun Workshop compiler.

Solution:
This bug only seems to happen when using the -xarch=v9 flag to compile in
64-bit mode, but disabling shared libraries entirely for this compiler is
an easier fix (I don't know how to detect 64 bit mode from the command line).
The framework for disabling shared libraries for other C++ compilers is
in place.

Platforms tested:
sol, mir, sleipnir, modi4
2005-09-16 16:16:11 -05:00
James Laird
cc8f7d98bf [svn-r11418] Purpose:
Bug fix/feature

Description:
Disabled shared libraries for a number of Fortran compilers that don't
support them.
This allows other compilers to support shared Fortran libraries.

Solution:
Added a conditional, SHARED_FORTRAN_CONDITIONAL, which is true if
Fortran supports shared libraries.  It is set in configure.in.

Platforms tested:
mir, sleipnir, colonelk, heping
2005-09-15 16:30:06 -05:00
Albert Cheng
6d3715e537 [svn-r11323] Purpose:
tidy up.

Description:
MPE option created *.clog file whenever it is executed in MPI.
The cleanup of *.clog files were done in individual Makefile.in.
Often, it is forgotten.

Solution:
Moved the cleaning of *.clog files to CHECK_CLEANFILES in commence.am
so that it is applied whenever check-clean is called.

Platforms tested:
heping pp using MPE.
2005-08-31 15:03:52 -05:00
James Laird
66af6dce17 [svn-r11319] Purpose:
Bug fixes

Description:
This checkin fixes an occasional error on kelgia on sol during distclean.
It also causes test scripts to depend properly on the programs they're
supposed to be testing.

Solution:
The kelgia bug was due to some files being cleaned by automake and manually.
Removed the manual cleaning in src/Makefile.am.
Test script dependencies now need to be specified manually, since the
makefile can't guess what they test from their name.  Currently all test
scripts in a given directory have a single list of dependencies--this was
easy and seems to be sufficient.
These dependencies are listed in the SCRIPT_DEPEND variable in the Makefile.am.

Platforms tested:
heping, mir, modi4, sol

Misc. update:
2005-08-30 18:42:39 -05:00
Quincey Koziol
fefbe61aca [svn-r11304] Purpose:
Code cleanup (sorta)

Description:
    Adjust H5G_stat_t to prepare for eventual "external link" information.
This also puts the information for regular objects and soft links into more
obviously separate places.

Platforms tested:
    FreeBSD 4.11 (sleipnir)
    Linux 2.4
2005-08-27 08:34:28 -05:00
Albert Cheng
538d37a1bc [svn-r11303] Purpose:
minor tidy up.

Description:
Changed both test programs and test scripts to use the same suffixes
(.chkexe and .chklog).  Changed from .log to .chklog to avoid running
into potential conflicts by other "things" (e.g., config.log).

Tested:
Heping.
2005-08-26 17:24:27 -05:00
Quincey Koziol
a4329aaa47 [svn-r11297] Purpose:
Code cleanup & speedup

Description:
    Refactor h5dump & related code to be considerably cleaner & faster for
files with large #'s of objects.

Platforms tested:
    FreeBS 4.11 (sleipnir)
    Linux 2.4
2005-08-25 15:16:40 -05:00
Quincey Koziol
b7d43b0cf0 [svn-r11283] Purpose:
Code cleanup

Description:
    Clean up code somewhat:
        - Move from HDmemset() -> H5G_ent_reset() to clear out group entry info
        - Simplify H5G_unlink() call
        - Use portability macros instead of direct system calls in more places
        - Improve readbility by neatening whitespace, etc.
        - Move some macros into source code module instead of header files

Platforms tested:
    FreeBSD 4.11 (sleipnir)
    Linux 2.4
2005-08-20 14:28:40 -05:00
Quincey Koziol
6b45f5172c [svn-r11245] Purpose:
Code cleanup

Description:
    Trim trailing whitespace, which is making 'diff'ing the two branches
difficult.

Solution:
    Ran this script in each directory:

foreach f (*.[ch] *.cpp)
    sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f
end


Platforms tested:
    FreeBSD 4.11 (sleipnir)
    Too minor to require h5committest
2005-08-13 15:53:35 -05:00
Albert Cheng
fbb2dd8545 [svn-r11213] Purpose:
Bug fix and improvement.


Description:
The test output were not displayed for parallel tests.
The serial tests output were always displayed whether the test was
actually ran this time or not.


Solution:
Moved the display of test output inside the target where the actual
tests are run.


Platforms tested:
Tested in heping using pp and fortran.
2005-08-08 12:30:23 -05:00
Albert Cheng
ea15f348a1 [svn-r11208] Purpose:
Bug fix and code minor cleanup.

Description:
The attempt to redirect stderr together to the log files were
done in the wrong order such that stderr output goes to where
stdout WAS.  Fixed that.

Code minor cleanup--use shell variables to hold the name of the
log file and the test instead of generating them repeatedly.  This
makes easier code reading, less crowded and avoid typos.

Only conclude.in is changed.  The Makefile.in changes are all
derived from automake.

Platforms tested:
h5committested.
2005-08-08 02:32:27 -05:00
James Laird
e75a185eca [svn-r11185] Purpose:
Makefile feature

Description:
'make check-clean' now cleans *.h5 files created by tests as well as
.log and .chkexe files.

Solution:
check-clean is now a separate target in its own right, which cleans less
than mostlyclean (check-clean < mostlyclean < clean < distclean).

Platforms tested:
mir, heping, modi4 (serial and parallel)
2005-08-02 12:59:03 -05:00
James Laird
c63ef2cba2 [svn-r11179] Purpose:
Feature: check-clean target

Description:
'make check-clean' cleans up output files from tests.

Solution:
Tests create foo.chkexe and foo.log files.  Scripts create foo.chksh and
foo.logsh files.  'make check-clean' will clean these files up so that
the tests can be re-run.
Also suppressed some not-very-useful output of Makefiles when it would
echo commands.

Platforms tested:
mir, sleipnir, modi4

Misc. update:
2005-08-01 17:22:55 -05:00
Quincey Koziol
34bd25f361 [svn-r11144] Purpose:
New port

Description:
    Elena asked me to check in her NEC SX-6 work, so here it is! :-)

Platforms tested:
    FreeBSD 4.11 (sleipnir)
    NEC SX-6 (by Elena)
2005-07-22 20:55:12 -05:00
James Laird
7236935a9d [svn-r11095] Purpose:
Configuration feature

Description:
Serial test output is now stored in log files and printed when all tests
in a directory complete, or when a test fails.  This should make test output
more readable and useful.
Also made changes to clean up ii_files directories that are created by some
C++ compilers/linkers.
Also fixed a few minor Makefile bugs.

Solution:
When serial tests run, their output is saved in *.log or *.logsh.  While
running, tests only print when they begin and when they complete; their
more specific output (from the log file) is printed if the test fails or
when all tests have completed.
Comments welcome.

Platforms tested:
mir, modi4 (parallel and serial), copper, shanti
2005-07-21 14:28:11 -05:00
Quincey Koziol
9b597516c0 [svn-r11042] Purpose:
Bug fix

Description:
    The ".chksh" file for a test script was being created in the "source"
location rather than the build location.  This can cause problems when
multiple builds are running because "slower" machines will see the ".cshsh"
file from faster machines and will not run the test script as they should.

Solution:
    Use 'basename' command to strip off the path of the script and create
the ".chksh" file in the build location.

Platforms tested:
    FreeBSD 4.11 (sleipnir)
    h5committest
2005-07-07 15:46:49 -05:00
Albert Cheng
f68a2e6db7 [svn-r11034] Purpose:
bug fix.

Description:
-nt is not a universal option for the test command in all platforms.
The use of it in conclude.am cause some platforms to bark at the
Makefile generated.

Solution:
Created a command script bin/newer which tests if file1 is newer
than file2.  Replace the "test file1 -nt file2" by
"newer file1 file2".

Platforms tested:
Tested in sol.
2005-07-06 23:52:45 -05:00
James Laird
4cf99e9f28 [svn-r11013] Purpose:
Bug fix

Description:
Fixed bugs that caused tests to be unable to find testhdf5.sh during
daily tests, and another that broke sol and shanti.

Solution:
When tests are run, their path is ./$testname .
When scripts are run, their path has no leading "./".  Fixed.
Sol and shanti don't recognize the -e option for test, but they do know
-f.  Fixed.
Also modified release notes.

Platforms tested:
mir, shanti, heping
2005-07-01 16:22:05 -05:00
James Laird
43f091f462 [svn-r11008] Purpose:
Feature: tests now use parallel make and only run once

Description:
When make is invoked in parallel (using the -j option), several tests will
now be run simultaneously.  This should speed up testing on a number of
systems.
When a test passes, it creates a foo.chkexe or foo.chksh file, which prevents
the test from running again unless the test or library changes.

Solution:
Most of the changes live in config/conclude.am.  Added *.chkexe and *.chksh
files to the list of files to be cleaned at "make mostlyclean" time.
Parallel tests still run one at a time, but use the same make instructions
as serial tests.

Platforms tested:
mir, eirene, sleipnir, pommier, copper, modi4 (some errors occurred, probably
due to the test being run before updating hdf5.  Will re-run tests after
checkin.)
2005-06-30 18:35:32 -05:00
Albert Cheng
65107926e1 [svn-r10858] Purpose:
bug fix.

Description:
The check-s and check-p targets are not recursively passes down.
Make them so.

Platforms tested:
heping (serial and pp).
2005-06-04 00:01:12 -05:00
Albert Cheng
a2217d58c8 [svn-r10849] Purpose:
bug fix

Description:
check-s and check-p were set as pre-requistics of test.  They
would get executed in parallel if parallel make is used.  This
could cause problems since serial tests are used to be executed
before parallel tests. It is not known if it is always okay to
run serial and parallel tests in simultantously.

Solution:
Change check-s and check-p as actions of the target test so
that they get executed sequnentially.

Platforms tested:
heping PP.
2005-06-02 18:42:48 -05:00
James Laird
2423bd6cab [svn-r10840] Purpose:
Added check-s and check-p targets.

Description:
Added check-s and check-p targets to 1.7 branch to match changes to 1.6
branch.  Now parallel and serial tests can be run separately.

Platforms tested:
mir, modi4, copper
2005-06-01 20:51:52 -05:00
James Laird
985af5617f [svn-r10785] Purpose:
Feature

Description:
Added "support" for UTF-8 character encoding.

Solution:
Wrote tests to check that UTF-8 can be used in a number of places in
HDF5 (object names, data, etc.).  These tests live in test/tunicode.c.
Added a new UTF-8 character encoding for datatypes.

Platforms tested:
mir, modi4, heping

Misc. update:
2005-05-23 13:20:07 -05:00
Quincey Koziol
eec925dc3f [svn-r10648] Purpose:
Bug fix

Description:
    Remove declaration of 'prefix' variable that was moved into the h5tools
library.

Platforms tested:
    FreeBSD 4.11 (sleipnir) w/CC=g++
    Too minor to require h5committest
2005-04-22 12:47:45 -05:00
Elena Pourmal
5279827823 [svn-r10570] Purpose: Maintenance
Description: Removed support for SRB driver

Solution: Removed or modified appropriate files; ran reconfigure
          to regenerate Makefile.in and configure files.

Platforms tested: heping and shanti

Misc. update: ran bin/chkmanifest on heping
2005-04-07 14:41:25 -05:00
James Laird
b296a419c4 [svn-r10534] Purpose:
Configuration feature

Description:
Different Fortran compilers mangle function names in different ways
(upper case, lower case, adding underscores).  To link between
Fortran and C functions, we need to know what a given function's
name is under a given compiler.

Solution:
Use autoconf's FC_WRAPPERS check to determine the Fortran
naming scheme and define the FC_FUNC_ macro to name our
functions (in H5f90proto.h).  Removed references to
our old FNAME macro, as well as flags that indicated whether
function names were upper or lower case.

Platforms tested:
mir, pommier, modi4, copper, more
2005-04-04 16:17:51 -05:00
James Laird
59ec5b3d66 [svn-r10517] Purpose:
Bug fix

Description:
On some machines, $RUNSERIAL variable needs to be used to run
tests.  Set $RUNTESTS (which is used for non-parallel tests) to
be $RUNSERIAL in configure.am.

Also, since I was updating all Makefiles.in anyway, I updated
commence.am to point to autotools installs in AFS instead of
those on heping.

Platforms tested:
mir, sleipnir, modi4, copper
2005-03-31 13:26:17 -05:00
James Laird
14e06e81cb [svn-r10511]
Purpose:
"Bug fix"

Description:
Hardcoded Makefiles to use /bin/sh instead of letting configure
detect shell automatically.  This is what v1.6 does, and avoids
problems on janus.

Platforms tested:
sleipnir, copper, modi4, mir
2005-03-30 16:14:48 -05:00
James Laird
7acf3f1b12 [svn-r10475] Purpose:
Feature - conditional compilation

Description:
SRB file driver and tests are now compiled only when SRB is enabled
(using --with-srb during configure).

Solution:
Added an automake conditional in configure.in, altered Makefiles.am in
src and test directories to depend on that conditional.
This should make a nice example for posterity to add conditionally
compiled sources.

Platforms tested:
heping (only configure change)
2005-03-29 12:38:17 -05:00
James Laird
9452992c09 [svn-r10459]
Purpose:
Added C++ wrapper for Packet Table API.

Description:
Added macro for high-level C++ library (LIBH5CPP_HL), which changes every
Makefile.in.
Added directories for high-level C++ library (though currently only Packet
Table API is supported).
Added both C++ source and tests.

Platforms tested:
sleipnir, mir, modi4

Misc. update:
2005-03-28 11:32:20 -05:00
James Laird
25df1908bc [svn-r10158] Purpose:
Automake version upgrade

Description:
Upgraded automake version from 1.6.2 to 1.9.5.
Changed bin/reconfigure script to use automake 1.9.5.
Changed configure.in and Makefiles to use new FCFLAGS and FC variables
instead of FFLAGS and F9X.
Automake and configure should now do the lion's share of the work
supporting Fortran 9X; macros in acsite.m4 are now mostly unused (will
be cleaned later).
Altered how configure handles pmake; now root-level Makefile.in is
processed by bin/reconfigure to have a .MAKEFLAGS target, since
automake no longer allows us to define unused variables.
Configure now always checks for C++ compiler even if it is not
used, since automake thinks this is the Right Thing To Do and
will break otherwise.

Platforms tested:
Sol, copper, heping, mir, sleipnir, eirene, pommier, kelgia, modi4.
2005-03-07 12:57:27 -05:00
Albert Cheng
0d514907a9 [svn-r10123] Purpose:
Removed GASS configuration and software packages associated with
it.  The following software are no longer configurable.

checking for main in -lcrypto... yes
checking for SSL_get_version in -lssl... yes
checking globus_common.h usability... yes
checking globus_common.h presence... yes
checking for globus_common.h... yes
checking for globus_module_activate in -lglobus_common... yes
checking for main in -lglobus_gass_cache... yes
checking for main in -lglobus_gaa... yes
checking for main in -lglobus_gss... yes
checking for main in -lglobus_gss_assist... yes
checking for main in -lglobus_io... yes
checking for main in -lglobus_gass_transfer_assist... yes
checking for main in -lglobus_gass_transfer... yes
checking for globus_gass_open in -lglobus_gass_file... yes

Platforms tested:
h5committested (but copper was down.) tested in modi4 too.
2005-03-02 15:02:55 -05:00
James Laird
0b83fea125 [svn-r10066] Purpose:
Libtool upgrade

Description:
HDF5 was using libtool 1.4.2.  Upgraded to libtool 1.5.14.

Platforms tested:
verbena, heping, pommier, copper, modi4, arabica
2005-02-23 11:47:00 -05:00
Raymond Lu
055c563da4 [svn-r10035] Purpose: Bug fix
Description: On SGI Altix(cobalt) Linux, wrong values were printed out for enum data type
members.  No apparent reason was discovered.

Solution:  use another pointer to the buffer containing the member value.  It seems fix the
problem.

Platforms tested:  cobalt - simple change, where the bug was discovered.
2005-02-17 15:49:08 -05:00
Xiaowen Wu
e358c94649 [svn-r10027] Purpose:
New feature.

Description:
    Add the scaleoffset internal library filter.

Solution:

Platforms tested:
     heping, copper, arabica

Misc. update:
2005-02-16 22:17:48 -05:00
James Laird
8ed95c0011 [svn-r10016]
Purpose:
Bug fix

Description:
modi4 dies during build with strange errors.
The root cause of these is a two-year-old hack in HDF5's libtool
script that only takes effect on IRIX.

Solution:
Edited the libtool hack (by editing ltmain.sh) to correct a bug in
the hack.
Also made sure that compiler-specific DEFAULT_LIBS are used
when linking.

Platforms tested:
sleipnir, copper, modi4, sol
2005-02-16 14:27:27 -05:00
James Laird
b96f342722 [svn-r9993] Purpose:
Bug fix

Description:
Arabica exhibited strange errors when linker found wrong versions of
header files.  This happened because include directories were
given to linker in the wrong order.

Solution:
Move include directories from AM_CFLAGS variable to INCLUDES
variable to put them before CPPFLAGS variable.  Trust me, it works.
This bug may also have contributed to strange errors on other platforms
(kelgia?).

Platforms tested:
copper, sleipnir, arabica.
	(h5dump broke while building on arabica, but this happened in
	a clean checkout, too).
2005-02-11 16:32:22 -05:00
James Laird
3f0a35a4ea [svn-r9988] Purpose:
Bug fix

Description:
pmake (on modi4, for instance) complains about undefined variables
if it is run without the -V flag, which turns those errors to warnings.

Solution:
Added test to configure.in to see if $MAKE will allow Makefiles
with undefined variables.  If not, sets -V flag in AM_MAKEFLAGS.
Ensured that all custom make targets use AM_MAKEFLAGS.
Also defined all variables that caused errors in top-level Makefile.am.
This means that pmake can be used to build hdf5 *from the top level
only*.  To run make from a subdirectory, still need to use -V flag
(or use make or gmake).

Platforms tested:
modi4, heping, copper, sleipnir
2005-02-11 12:40:52 -05:00
James Laird
db2575baa9 [svn-r9930]
Purpose:
Bug fix

Description:
Parallel builds were breaking in tools/lib

Solution:
talign didn't realize it depended on libh5tools.la because its
dependencies listed the full path (../../tools/lib/libh5tools.la).
Changed this, and made similar changes in a couple of other
directories.
This checkin should also add the --foreign flag to every Makefile.in

Platforms tested:
sleipnir (minor change)
2005-02-03 16:59:40 -05:00
Quincey Koziol
0b332ace5e [svn-r9928] Purpose:
New feature

Description:
    Add basic code for new B-tree implementation.  They don't do much yet,
aren't hooked up to anything yet and the format may change, but I'd like to
start getting them into the daily tests.

Platforms tested:
    FreeBSD 4.11 (sleipnir) w/parallel
    Too minor to require h5committest
2005-02-03 14:59:05 -05:00
James Laird
ab243bf369 [svn-r9920] Purpose:
Bug fix

Description:
Found the permanant fix to automake/CVS dependency problem

Solution:
Added AM_MAINTAINER_MODE macro to configure.in.
Now automake will never try to regenerate Makefiles, Makefiles.in,
configure, H5config.h, etc. when they are out of date, nor will it
print any warnings.
Developers should  be very very careful to use reconfigure script,
and can add --enable-maintainer-mode flag to configure on heping
to regenerate these files correctly.

Platforms tested:
heping sleipnir copper
2005-02-02 15:59:46 -05:00
James Laird
ed8685acd2 [svn-r9915] Purpose:
Bug fix

Description:
Configuration files' timestamps were incorrect.

Solution:
Update Makefiles.in.  Also added correct paths to autotools on heping,
so heping build should be able to re-generate configuration files even
if they are still broken.

Platforms tested:
sleipnir
2005-02-02 11:00:36 -05:00
James Laird
e3dacb31be [svn-r9912] Purpose:
Bug fix

Description:
Dependencies between configure files (aclocal, configure.in, configure,
Makefiles.am and .in) are still causing Makefiles to try to run autotools
during build.

Solution:
Committed all Makefiles.in to update their timestamps.
As a temporary measure, forcibly prevented automake from running
autotools during build by redefining the variables it uses.

Platforms tested:
sleipnir (No changes to Makefile content)
2005-02-01 16:05:33 -05:00
James Laird
30bfb1e0ea [svn-r9907] Purpose:
Bug fix

Description:
Different compilers use different flags to include Fortran module files

Solution:
Changed boilerplate to use configure variable rather than hardcoded -M flag.

Platforms tested:
sleipnir, sol, copper
2005-02-01 10:27:37 -05:00
James Laird
26303241fe [svn-r9902] Purpose:
Configuration feature

Description:
HDF5 now uses automake to generate Makefiles

Solution:
Makefile.in files are now generated from Makefile.am files.
To reconfigure (after chaning a Makefile.am or configure.in):
/bin/sh bin/reconfigure.sh

Platforms tested:
Many
2005-01-31 22:17:02 -05:00
Quincey Koziol
5695ffc13d [svn-r9869] Purpose:
Bug fix

Description:
    In an earlier bug-fix, I inadvertently inverted the meaning of the
"% utilization" in h5ls.

Solution:
    De-invert it. :-)

Platforms tested:
    FreeBSD 4.10 (sleipnir)
    Too minor to require h5committest
2005-01-25 08:18:37 -05:00
Quincey Koziol
427ff7da28 [svn-r9727] Purpose:
Bug Fix/Code Cleanup/Doc Cleanup/Optimization/Branch Sync :-)

Description:
    Generally speaking, this is the "signed->unsigned" change to selections.
However, in the process of merging code back, things got stickier and stickier
until I ended up doing a big "sync the two branches up" operation.  So... I
brought back all the "infrastructure" fixes from the development branch to the
release branch (which I think were actually making some improvement in
performance) as well as fixed several bugs which had been fixed in one branch,
but not the other.

    I've also tagged the repository before making this checkin with the label
"before_signed_unsigned_changes".

Platforms tested:
    FreeBSD 4.10 (sleipnir) w/parallel & fphdf5
    FreeBSD 4.10 (sleipnir) w/threadsafe
    FreeBSD 4.10 (sleipnir) w/backward compatibility
    Solaris 2.7 (arabica) w/"purify options"
    Solaris 2.8 (sol) w/FORTRAN & C++
    AIX 5.x (copper) w/parallel & FORTRAN
    IRIX64 6.5 (modi4) w/FORTRAN
    Linux 2.4 (heping) w/FORTRAN & C++


Misc. update:
2004-12-29 09:26:20 -05:00
Quincey Koziol
b4d39e7adb [svn-r9447] Purpose:
Bug fix

Description:
    Correct values used in "space utilization" equation: the 'used' and
'total' values were backwards.

Platforms tested:
    FreeBSD 4.10 (sleipnir)
    Too minor to require h5committest
2004-10-22 16:03:50 -05:00
Quincey Koziol
defe612ab2 [svn-r9370] Purpose:
Refactor code

Description:
    Refactor common code for determining the native type for using in the
tools into separate routine.

    Also, reduce diffs between the two branches and bring back some fixes from
the development branch to the release branch.

Platforms tested:
    FreeBSD 4.10 (sleipnir)
    too minor to require h5committest
2004-10-06 11:11:18 -05:00
Raymond Lu
7ba45c05b3 [svn-r9364]
Purpose:  change feature

Description:  Back up support bitfield and time datatypes in H5Tget_native_type.Leave it to future support.  Let it return "not supported" error message for
now.


Platforms tested:  h5committest and fuss.

Misc. update:  RELEASE.txt
2004-10-05 09:31:14 -05:00
Raymond Lu
cb7f03a26f [svn-r9183] Purpose: New feature
Description:  Restore 6 old error API functions back to the library to be backward
compatible with v1.6.  They are H5Epush, H5Eprint, H5Ewalk, H5Eclear, H5Eset_auto,
H5Eget_auto.  These functions do not have error stack  as parameter.

Solution:  Internally, these functions use default error stack.

Platforms tested:  h5committest and fuss.

Misc. update: RELEASE.txt
2004-09-01 12:43:30 -05:00
Quincey Koziol
084ed88137 [svn-r8983] Purpose:
Update dependencies

Description:
    Update dependencies after config/depend1.in bugfix

Platforms tested:
    FreeBSD 4.10 (sleipnir) w/parallel
    IRIX64 6.5 (modi4)
    h5committested
2004-08-02 09:06:07 -05:00
Quincey Koziol
e5e786f589 [svn-r8782] Purpose:
Code cleanup

Description:
    Clean up almost all warnings from Windows builds.

Platforms tested:
    FreeBSD 4.10 (sleipnir) w/parallel
    Too minor to require h5committest
2004-07-01 15:02:47 -05:00
James Laird
eab58732d8 [svn-r8781]
Purpose:
HDF5 now supports SZIP with no encoder.

Description:
SZIP can be configured to have both encoder and decoder or just to have the decoder.  HDF5 can now query the configuration of any filter, and will throw errors if users try to write using a filter with encoding disabled.

Solution:
Added H5Zget_filter_info function, changed API for H5Pget_filter and H5P_get_filter_by_id.  See SZIP RFC.

Platforms tested:
Copper (fortran, C++, parallel), Sleipnir (C++), Arabica (fortran, C++), Verbena (fortran, C++)

Misc. update:
2004-07-01 12:38:04 -05:00
Pedro Vicente Nunes
2194263d1b [svn-r8659] Purpose:
bug fix

Description:
a prototype for a new function used by h5tools_str.c was accidently left in that file
the c++ treats this as an error

Solution:
removed the prototype, and pointed to the correct one (in h5tools_ref.h )

Platforms tested:
Free BSD (c++)
linux

Misc. update:
2004-06-11 10:04:48 -05:00
Pedro Vicente Nunes
78ca05e040 [svn-r8644] Purpose: h5dump new features
Description:

added the code for print strings with new line and display the path of references (new source files h5tools_ref.c and .h )
added a test suite in testh5dump.sh.in for
( note : to create testh5dump.sh , one must redo ./configure; this detects the availability of filters
and generates  testh5dump.sh accordingly)
1) storage layout
2) fill value
3) print reference with path
4) print strings with new lines
5) filters

Solution:

Platforms tested:
linux
solaris
AIX

Misc. update:
2004-06-10 12:35:48 -05:00
Raymond Lu
9e9bdad5e9 [svn-r8563] *** empty log message *** 2004-05-21 10:58:53 -05:00
Quincey Koziol
583bdf994c [svn-r8495] Purpose:
Bug fixes

Description:
    Updated dependencies

    Fixed error with C++ compiler builds of main library

    Added H5Pset_data_transform to MPE info

Platforms tested:
    FreeBSD 4.9 (sleipnir)
2004-05-08 09:48:42 -05:00
Quincey Koziol
0a29514b9d [svn-r8383] Purpose:
Code cleanup

Description:
    Clean up lots of warnings based on those reported from the SGI compilers
as well as gcc.

Platforms tested:
    SGI O3900, IRIX64 6.5 (Cheryl's SGI machine)
    FreeBSD 4.9 (sleipnir) w/ & w/o parallel
    h5committest
2004-04-17 23:10:09 -05:00
Quincey Koziol
1b147875db [svn-r8151] Purpose:
Bug fix

Description:
    Fix h5tools routines to not try to call MPI_Init() unless an MPI-based
VFD is actually used.

Platforms tested:
    FreeBSD 4.9 (sleipnir) w/parallel
    Linux 2.4 (verbena) w/parallel
2004-02-04 17:43:00 -05:00
Quincey Koziol
233319898d [svn-r8143] Purpose:
New Feature.  (Contributed by Robb)

Description:
    Allow h5ls to specify a VFL with the '--vfl=' command line flag.

    Add MPI-I/O & MPI-POSIX VFL drivers to list of drivers available for
h5ls and h5dump.

Platforms tested:
    FreeBSD 4.9 (sleipnir) w/parallel
    h5committested
2004-02-01 22:32:41 -05:00
Quincey Koziol
2d8964517b [svn-r8128] Purpose:
Update dependencies after restructuring of MPI stuff
2004-01-30 21:32:19 -05:00
Quincey Koziol
e2518919c9 [svn-r7626] Purpose:
Update dependencies and tracing information

Platforms tested:
    Linux 2.4 (verbena) w/FORTRAN
    too minor for h5committest
2003-10-14 10:46:38 -05:00
Quincey Koziol
324cd9d1e2 [svn-r7616] Purpose:
Code cleanup

Description:
    Change field member count and indices for compound and enumerated types from
'int' to 'unsigned' to better reflect actual use.

    Cleaned up a few other minor compiler warnings, etc.

Platforms tested:
    FreeBSD 4.9 (sleipnir)
    Linux 2.4 (verbena)
    too minor to require h5committest
2003-10-13 14:31:33 -05:00
Raymond Lu
7e79a8d71e [svn-r7507] *** empty log message *** 2003-09-24 14:26:50 -05:00
Quincey Koziol
32220914a5 [svn-r7401] Purpose:
Code cleanup

Description:
    Remove various "fixtype" routines which duplicate (and actually pre-date)
    the functionality in H5Tget_native_type in favor of having the tools call
    H5Tget_native_type().  This provides the same functionality (actually better
    functionality, since the old "fixtype" routines didn't handle alignment of
    compound fields correctly) and reduces the amount of code to maintain.

    Add additional tests to dump out a "complex" compound datatype which
    exercises more code in the library for aligning compound fields correctly.

Platforms tested:
    FreeBSD 4.8 (sleipnir)
    h5committest
2003-08-25 15:00:56 -05:00
Albert Cheng
374ad0ef30 [svn-r7361] Description:
Updated the copyright notice--mostly by rearranging
some text to make them consistent.

Solution:

Platforms tested:
"h5committested"--sol is down, so, no SUn test.

Misc. update:
2003-08-13 23:58:29 -05:00
Quincey Koziol
7f119036d3 [svn-r7352] Purpose:
Updated dependencies

Platforms tested:
    h5committested
2003-08-12 20:50:11 -05:00
Quincey Koziol
4032cbf360 [svn-r7326] Purpose:
Refactored code

Description:
    Chased 'objno' and 'fileno' changes in H5G_stat_t structure, including
updating the addresses displayed.

Platforms tested:
    h5committested
2003-08-08 14:37:55 -05:00
Raymond Lu
0d22a663df [svn-r7265] *** empty log message *** 2003-07-25 21:55:47 -05:00
Quincey Koziol
01e9075358 [svn-r7211] Purpose:
Code cleanup

Description:
    Various code cleanups suggested by lint tool

Platforms tested:
    FreeBSD 4.8 (sleipnir)
    h5committest
2003-07-11 13:06:51 -05:00
Quincey Koziol
06f27f99b0 [svn-r7192] Purpose:
Code cleanup

Description:
    Clean up various minor warnings in the library.

Platforms tested:
    FreeBSD 4.8 (sleipnir)
    too small to need h5committest
2003-07-09 14:16:17 -05:00
Bill Wendling
6c41212cc4 [svn-r7123] Purpose:
Bug Fix

Description:
    The SUBDIRS macro is now defined as "" in the config/commence.in
    file. We shouldn't have definitions of this macro before the
    inclusion of config/commence.in.

Solution:
    Placed all definitions of SUBDIRS after config/commence.in inclusion.

Platforms tested:
    Modi4 (Small fix yet again).

Misc. update:
2003-06-30 11:26:46 -05:00
Raymond Lu
67449f5c65 [svn-r7021] Purpose: bug fix
Description: H5Tget_native_type fails for multiple kinds of datatype on Cray; it fails
             fix-length string type, too.


Platforms tested: Cray, h5committest
2003-06-10 16:04:58 -05:00
Quincey Koziol
4401a71f3a [svn-r7004] Purpose:
Bug fix

Description:
    The output from the modification time is highly system dependent, so
remove it from the h5ls output before comparing file with diff.

Platforms tested:
    FreeBSD 4.8 (sleipnir)
    h5committest
2003-06-09 14:24:37 -05:00
Quincey Koziol
212a9529b0 [svn-r7003] Purpose:
Code cleanup/new features.

Description:
    Clean up whitespace & formatting.

    Make the -S (simple) output display a dataset's modification time in UTC
        rather than local timezone.

    Display variable-length datatype information.

    Simplified & enhanced bitfield datatype information displayed.


Platforms tested:
    FreeBSD 4.8 (sleipnir)
    h5committest
2003-06-09 14:22:55 -05:00
Pedro Vicente Nunes
e9e6cf0c2b [svn-r6913] Purpose:
bug fix and enhancement


Description:
combined the --simple option to the display of NATIVE datatypes
with the -S option , the print of the datatype will always display the full description
making it possible to do an automatic test for catching differences on output

made the case for printing the type of bitfield data, which was not handled

the new test generates a dataset with 10 attributes, each one a different datatype

Platforms tested:


Windows 2000 (octopus)
Linux 2.4 (rockaway)
SunOS 5.7 (arabica)
IRIX 6.5 (modi4)



Misc. update:
2003-05-22 17:31:07 -05:00
Pedro Vicente Nunes
c26a0bc516 [svn-r6903] Purpose:
bug fix

Description:
when the list attribute function was called with values of type reference, the format string was not initialized
causing a segmentation fault on printf

Solution:
initialized the string  ( with obj no and file no turned on )

Platforms tested:

Windows 2000 (octopus)
Linux 2.4 (rockaway)
SunOS 5.7 (arabica)
IRIX 6.5 (modi4)



Misc. update:
2003-05-19 15:11:45 -05:00
Quincey Koziol
a3a391d457 [svn-r6576] Purpose:
Cleanup

Description:
    Update dependencies.

Solution:

Platforms tested:
    Linux 2.4 (eirene)

Misc. update:
2003-04-03 08:46:11 -05:00
Bill Wendling
bd16546ad0 [svn-r6543] Purpose:
Update

Description:
    Updated copyright statement

Platforms tested:
    Linux (only comment change)

Misc. update:
2003-03-31 13:08:23 -05:00
Quincey Koziol
0475dd9a70 [svn-r6412] Purpose:
Code cleanup

Description:
    Update dependencies and clean up a few warnings.

Platforms tested:
    Linux 2.2 (eirene) w/parallel
2003-02-17 12:11:03 -05:00
Quincey Koziol
98f01e2df2 [svn-r6255] Purpose:
Code cleanup

Description:
    Clean up a few more warnings and update dependencies.

Platforms tested:
    Linux 2.2.18smp (eirene) serial & parallel
2003-01-09 13:40:19 -05:00
Robb Matzke
76f7bb10ac [svn-r6179] ./hdf5-devel/tools/h5ls/h5ls.c
Purpose:
    New Feature; Optimization; Clean-up
    (Merged from 1.4 branch)

Description:
    There is no symbolic constant to pass to functions that take an
    optional object ID for when the caller wants to indicate no object
    ID. In the past the caller always passed a negative integer.

    GPFS performs poorly.

    The h5ls tool decides whether to list the file name in the output
    based on a compile-time choice, which isn't always optimal at run
    time.

Solution:
    Added a symbolic constant H5I_INVALID_HID.

    Added code to tell the mmfsd of GPFS to forego byte range token
    prefetching.

    h5ls decides whether to print the file name at runtime based on
    the number of objects being listed.

Platforms tested:
    SuSE Linux (arborea), gcc and mpich-1.2.4
    SunOS (baldric), gcc


2002-12-03 23:00:35 Robb Matzke  <matzke@arborea.spizella.com>
	* main: Replaced the H5LS_PREPEND_FILENAME compile-time symbol which was
	   always defined, with a runtime decision. If h5ls is
	   invoked with more than one argument then the file name
	   is displayed as part of the object name, otherwise the
	   file name is not displayed.
2002-12-04 10:44:07 -05:00
Quincey Koziol
ea08053e29 [svn-r5983] Purpose:
More fixups to the Dependencies files...
2002-10-14 13:11:12 -05:00
Quincey Koziol
a83585acca [svn-r5981] Purpose:
Regenerate Dependencies files.
2002-10-14 09:58:25 -05:00
Albert Cheng
73683e4380 [svn-r5278] Purpose:
Migrate from configure macros of XYZ_ABC to H5_XYZ_ABC
Description:
    configure generates many macros definitions on the fly and
    were stored in src/H5config.h which is included by H5public.h.
    But other software that uses hdf5 may also run their own configure.
    There can be a clash in macro name space.  We decided awhile ago
    to prepend all generated macros with "H5_" to avoid conflicts.
    The process has started and this commit completes it (at least attempt
    to).
Solution:
    Many macros symbols (e.g. SIZEOF_xxx and HAVE_xxx were changed to
    H5_SIZEOF_xxx and H5_HAVE_xxx).  Then H5private.h no longer includes
    H5config.h.  This cuts H5config.h away from HDF5 source code.
Pending issues:
    The module of fortran and pablo are to be resolved in a different
    commit.
Platforms tested:
    eirene (parallel), arabica (solaris 7 --enable-fortran, --enable-cxx)
2002-04-28 03:34:17 -05:00
Quincey Koziol
e5fc40662c [svn-r5219] Purpose:
Code cleanup

Description:
    Clean up warnings from gcc 3.1

Platforms tested:
    FreeBSD 4.5 (sleipnir)
2002-04-22 12:48:24 -05:00
Quincey Koziol
ef9c40754b [svn-r5200] Purpose:
Code Cleanup

Description:
    Clean up compiler warnings from the last bunch of checkins

Platforms tested:
    FreeBSD 4.5 (sleipnir)
2002-04-18 09:05:38 -05:00
Robb Matzke
9606ebdfc7 [svn-r5143] ./hdf5-devel/tools/h5ls/h5ls.c
Minor h5ls bugfix for compound types with array members.
(Similar changes shortly for 1.4 branch).


2002-04-04 16:39:09 Robb Matzke  <matzke@arborea.spizella.com>
	* display_cmpd_type: Removed code to display array dimensions from display_cmpd_type()
	   since this was a holdover from the days when hdf5
	   didn't have an array datatype and was duplicated by
	   display_array_type().
2002-04-05 14:42:58 -05:00
Robb Matzke
84f632178c [svn-r4898] ./hdf5-devel/tools/h5ls/h5ls.c
Fixed copyright notice
2002-02-01 14:05:14 -05:00
Robb Matzke
378df38955 [svn-r4892] ./hdf5-devel/tools/h5ls/h5ls.c
2002-01-31 15:22:24 Robb Matzke  <matzke@arborea.spizella.com>
	*: Displays array data type information instead of saying `4-byte
	   class-10 unknown'.
2002-01-31 14:47:06 -05:00
Albert Cheng
e22c095636 [svn-r4757] Purpose:
Removing the DPSS (gridstorage) driver source code.
Description:
    The DPSS (using Grid-Storage) driver is retired.
    Removed the configure option with-gridstorage from configure.in.
    Cvs remove the following files
    ./src/H5FDdpss.c
    ./src/H5FDdpss.h
    ./test/dpss_read.c
    ./test/dpss_write.c

    Regenerated Dependencies files (some had to be hand-edited since
    'make depend' did not cover them.)
    Removed reference to DPSS Virtual file driver from H5F.c.
Platforms tested:
    modi4 (Parallel; -with-gass=...), eirene, arabica (fortran, cxx).
2001-12-30 00:23:38 -05:00
Quincey Koziol
d456c2bb82 [svn-r4643] Purpose:
Code cleanup
Description:
    Windows is generating hundreds of warnings from some of the practices in
    the library.  Mostly, they are because size_t is 32-bit and hsize_t is
    64-bit on Windows and we were carelessly casting the larger values down to
    the smaller ones without checking for overflow.

    Also, some other small code cleanups,etc.

Solution:
    Re-worked some algorithms to eliminate the casts and also added more
    overflow checking for assignments and function parameters which needed
    casts.

    Kent did most of the work, I just went over his changes and fit them into
    the the library code a bit better.

Platforms tested:
    FreeBSD 4.4 (hawkwind)
2001-11-27 11:29:13 -05:00
Quincey Koziol
ed663577a5 [svn-r4473] Purpose:
Code cleanup for better compatibility with C++ compilers
Description:
    C++ compilers are choking on our C code, for various reasons:
        we used our UNUSED macro incorrectly when referring to pointer types
        we used various C++ keywords as variables, etc.
        we incremented enum's with the ++ operator.
Solution:
    Changed variables, etc.to avoid C++ keywords (new, class, typename, typeid,
        template)

    Fixed usage of UNUSED macro from this:
        char UNUSED *c
    to this:
        char * UNUSED c

    Switched the enums from x++ to x=x+1
Platforms tested:
    FreeBSD 4.4 (hawkwind)
2001-09-25 12:46:32 -05:00
Bill Wendling
b5d11111b0 [svn-r4292]
Purpose:
    Bug Fix
Description:
    The way we were generating Dependencies and .depend files was broken.
    If the $srcdir or other macros began with a ".", then it would match
    anything and cause problems since it would then overwrite the
    beginning of the header file's path.
Solution:
    Wrote a Perl script which can handle this type of weirdness better.
    It's only used when the environment is a GNU one with a GCC
    compiler...
Platforms tested:
    Linux
2001-08-01 16:00:25 -05:00
Bill Wendling
88729d4c14 [svn-r4282]
Purpose:
    Bug Fix/Feature Add
Description:
    Added new flag ("-f" and "--family") to allow user to specify which
    file driver to use to open the file. If they don't specify anything,
    then it defaults to the old behaviour of trying each driver in turn
    until one actually opens the file.

    If the driver the user specified doesn't succeed in opening the
    file, then we do NOT try other file drivers.
Platforms tested:
    Linux
2001-07-30 16:55:46 -05:00
Quincey Koziol
990fadfbe5 [svn-r4181] Purpose:
Bug Fix, Code Cleanup, Code Optimization, etc.
Description:
    Fold in the hyperslab speedups, clean up compile warnings and change a
    few things from using 'unsigned' or 'hsize_t' to use 'size_t' instead.
Platforms tested:
    FreeBSD 4.3 (hawkwind), Solaris 2.7 (arabica), Irix64 6.5 (modi4)
2001-07-10 16:19:18 -05:00
Quincey Koziol
d41b9fffdf [svn-r4012] Purpose:
Clean up compiler warnings.
Description:
    Just code neatening mostly, some casts, etc.
Platforms tested:
    FreeBSD 4.3 (hawkwind)
2001-06-18 15:22:10 -05:00
Bill Wendling
6c130407eb [svn-r3768] Purpose:
Update
Description:
    Replaced "#include <hdf5_file.h>" with the equivalent, but better
    #include "hdf5_file.h" so that gcc can pick up our header files more
    easily.
Platforms tested:
    Linux
2001-04-03 12:47:08 -05:00
Bill Wendling
690a3fa068 [svn-r3574] Purpose:
Update
Description:
    Updated to reflect the new naming of APIs in the h5tools library.
    I.e., things which were once named "h5dump_*" now have the "h5tools_"
    prefix instead.
Platforms tested:
    Linux
2001-03-08 15:22:08 -05:00
Bill Wendling
2821175f3f [svn-r3489] Purpose:
Code Movement
Description:
    Moved tools code into their own separate subdirectories
Platforms tested:
    Linux, Kelgia
2001-02-22 16:53:56 -05:00