Commit Graph

1364 Commits

Author SHA1 Message Date
Allen Byrne
07756c87f5 Update develop to 1.18 API 2024-10-02 19:53:38 -05:00
jhendersonHDF
34d6ef545a
Refactor h5test.c, testframe.c and testpar.h testing frameworks (#4891)
Added new testframe.h header to document testing framework functions and
split them away from h5test.h and from test programs that don't
integrate with the testframe.c testing framework

Added new test setup callback to testframe.c testing framework

Added parameters to AddTest() to specify size of test parameters so they
can be copied for later use

Enabled HDF5 error stacks in testframe.c framework by default and added
some error stack suppressions to some testhdf5 tests

Added new maxthreads option to testframe.c framework to allow specifying
the maximum number of threads a multi-threaded test can use

Moved TestExpress functionality out of testframe.c and into more general
h5test.c for wider use by tests through getter and setter

Updated some tests to not mix and match functionality between h5test.c/h
and testframe.c/h

Moved some functionality from testphdf5.h into testpar.h for parallel
tests that aren't part of testphdf5

Added new parallel test library that contains common shared
functionality for parallel tests (similar to h5test library)
2024-10-01 16:10:03 -05:00
Allen Byrne
f77b70859f
Rework Dynamic Analysis and sanitize testing (#4681)
* Ignore predetermined failing test and check pointer before use

* Rework Analysis process
2024-08-05 09:53:53 -05:00
Allen Byrne
162f01292c
Rework the TestExpress usage and refactor dead code (#4590) 2024-06-20 14:01:43 -07:00
Allen Byrne
dca6370691
Move C++ and Fortran and examples to HDF5Examples folder (#4552) 2024-06-08 06:46:09 -05:00
Dana Robinson
f44fa558f2
Clean up off_t --> HDoff_t stragglers (#4555)
* off_t --> HDoff_t in test

* off_t --> HDoff_t in h5ls, h5dump, & h5repack

* Minor off_t tweak to configure.ac

* off_t --> HDoff_t fixes in src

This changes the type of the offset parameter in H5Pget_external()
to HDoff_t to match H5Pset_external(), along with other minor tweaks.

* off_t --> HDoff_t in C++ wrappers

* Fix off_t usage in Java wrapper
2024-06-07 17:25:06 -07:00
Allen Byrne
162e7d676d
Allow HDF5_LIB_INFIX to work with DLL (#4500)
* Allow HDF5_LIB_INFIX to work with DLL

* Separate individual library name into parts and add suffix option

* Java cannot use alternative names and removed extra setting

* Incorporate the underscore into the CORE name
2024-05-28 08:27:15 -07:00
Julien Schueller
ea76013648
H5Group: Fix operator= (#4473)
Closes #4472
2024-05-10 16:30:19 -05:00
Scot Breitenfeld
527ab8c2fd
Removed duplicate entries in compile line for h5* compiler wrappers (#4360)
* h5fc remove duplicate args
* h5 wrappers remove duplicate args
2024-04-09 17:01:00 -07:00
Allen Byrne
aa08f39e64
Remove obsolete c++ doxygen config files (#4358) 2024-04-09 14:04:01 -07:00
jhendersonHDF
30c1bbdfe7
Initialize a variable in C++ testhdf5's tattr.cpp (#4232) 2024-03-24 23:15:01 -07:00
jhendersonHDF
10e0d39b6d
Avoid file size checks in C++ testhdf5 for certain VFDs (#4226) 2024-03-24 15:13:05 -05:00
Jouke Witteveen
cfb1c798b9
Don't set the rpath when linking statically (#4125) 2024-03-13 08:03:21 -07:00
Dana Robinson
0ea1d7280b
Clean up off_t usage (#4095)
* Add comments to C++ and Fortran API calls that use off_t
* Remove noise casts for small integers
2024-03-09 09:06:10 -08:00
Dana Robinson
d4c84f8d0a
Fix the last C++ stack size warning (#4099) 2024-03-09 09:05:37 -08:00
Sean McBride
16255aa8c3
Fixed -Wdeprecated-copy-dtor warnings by implementing a copy assignment operator (#3306)
Example warning was:

warning: definition of implicit copy assignment operator for 'Group' is deprecated because it has a user-declared destructor [-Wdeprecated-copy-dtor]
2024-03-08 21:09:47 -08:00
Allen Byrne
0be892585a
Rename incorrectly named option (#4067)
* Rename incorrectly named option

* Restore the correct uses of USING_MEMCHECKER

* Update release note
2024-03-05 09:07:16 -08:00
Sean McBride
623907f397
Modern C++ dtor declarations (#1830)
* C++ dtor modernization

- Replaced a bunch of empty dtors with `= default`
- Removed deprecated `throw()`. In C++11, dtors are `noexcept` by default.

*
2024-02-09 11:29:55 -06:00
Scot Breitenfeld
3a3501df2d
h5 compiler wrappers now pass all arguments passed to it to the compile line (#3954)
* The issue was that the "allargs" variable was not being used in the final command of the compiler wrapper. Any entries containing an escaped quote (\", \') or other non-matching argument (*) would not be passed to the compile line. I have fixed this problem by ensuring all arguments passed to the compiler wrapper are now included in the compile line.

* added testing for compiler wrappers
2024-01-30 12:20:58 -06:00
Allen Byrne
3ea21ccb3e
Add HDF5_DISABLE_TESTS_REGEX option to skip tests (#3859) 2023-11-22 07:51:30 -06:00
Robert Adam
87b3e7c821
Don't build util tests when HDF5_EXTERNALLY_CONFIGURED=ON (#3781)
Fixes #3780
2023-10-30 12:47:06 -05:00
jhendersonHDF
e64c946e14
Correct comments about H5Z_FILTER_NONE (#3572) 2023-09-22 08:46:19 -05:00
Dana Robinson
44a00ef876
Strip HD prefix from string/char C API calls (#3540)
* Strip HD prefix from string/char C API calls

* HD(f)(put|get)(s|c)
* HDstr*
* HDv*printf
* HD(s)(print|scan)f
* HDperror

But NOT:

* HDstrcase*
* HDvasprintf
* HDstrtok_r
* HDstrndup

As those are not C99 and have portability work-around
implementations. They will be handled later.

* Fix th5_system.c screwup
2023-09-15 15:13:18 -07:00
Mark Kittisopikul
426a7f82f6
Avoid truncating at null byte when copying to std::string (#3083)
---------

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2023-07-15 23:31:57 -05:00
Dana Robinson
39e6bf48c9
Remove HD from HDmem* calls (#3211) 2023-06-29 12:33:46 -07:00
Dana Robinson
fd933f30b1
Remove programmer/date from comments (#3210)
* Removes Programmer: and Date: fields
* Fixes a few Modifications: fields leftover from previous work
2023-06-29 12:13:29 -07:00
Dana Robinson
aebac33a1f
Remove HD from memory allocate/free calls (#3195)
* HDcalloc
* HDfree
* HDmalloc
* HDrealloc
2023-06-28 15:48:12 -07:00
Dana Robinson
187ea8a9ae
Rename HD(f)printf() to (f)printf() (#3194) 2023-06-28 08:31:32 -07:00
Sean McBride
65d8c93470
Many fixes to various compiler warnings (#3124)
* Fixed various -Wmissing-variable-declarations by adding static keyword
* In a few cases, renamed the variable suffix from _g to _s.
* Fixed some -Wmissing-variable-declarations by using different declaration macros
* Fixed various -Wconditional-uninitialized warnings by just initializing variable to zero
* Fixed various -Wcomma warnings
* Fixed clang -Wstrict-prototypes warnings
* Fixed various -Wunused-variable warnings
* Updated some casts to fix the only 3 -Wcast-qual warnings
* Fixed the only -Wsometimes-uninitialized warning
2023-06-18 22:13:38 -07:00
Sean McBride
68eba3da69
Many clang -Wextra-semi-stmt fixes (#2537)
* Adds semicolons to function-like macros
* Adds a do..while(0) loop to some macros
* Removes semicolons when inappropriate, especially H5E_TRY_BEGIN/END
2023-06-15 21:49:02 -07:00
Allen Byrne
4b228ec6af
Fix CMake generator expression syntax (#2909) 2023-05-05 15:57:40 -05:00
Quincey Koziol
49a71463a0
Comment cleanup (#2689)
* Clean up content and redundant logging in comments.
2023-04-11 09:41:32 -05:00
Allen Byrne
526f0769a3
Minor fixes for CMake code and install docs (#2623) 2023-04-03 14:38:10 -07:00
Allen Byrne
cb679af19d
Make sure that ONLY_SHARED_LIBS option is correctly set (#2544) 2023-03-13 16:24:49 -05:00
Allen Byrne
32a54c0e2e
CMake generated pkg-config file is incorrect #2259 (#2476)
* CMake generated pkg-config file is incorrect #2259

* Fix fortran pc template

* hdf5.pc is incorrect for debug builds #1546

* Correct pkg name and lib name

* Fix typo

* Fix missing space
2023-02-17 14:17:17 -08:00
Allen Byrne
9f5cf0a457
H5F_LIBVER_LATEST changes for move to 1.15 (#2288)
* H5F_LIBVER_LATEST changes for move to 1.15

* Add new default api check

* Format fixes

* Fix default configure

* fix lib version tests

* Fix another version variable

* Add 1.14 doc link
2022-12-21 10:07:25 -08:00
Allen Byrne
dcccc35526
Correct requires setting for pkgconfig files (#2280)
* Correct requires setting for pkgconfig files

* Add issue number
2022-12-07 16:05:51 -06:00
Larry Knox
11dfa25910
Update copyright headers (#2184)
* Updated source file copyright headers to remove "Copyright by the Board of Trustees
of the University of Illinois", which is kept in the top-level COPYING file.
2022-11-01 16:02:27 -05:00
Larry Knox
0173706826
Update develop branch version to 1.13.4-1 (#2189)
* Updated version to 1.13.4-1 after creating hdf5_1_13_3 branch for 1.13.3
release.
Added new version to exceptions in lines 74-5 of src/H5.c
2022-10-26 11:07:17 -05:00
Scot Breitenfeld
ba1fe3d1df
converted from ISO-8859-1 to UTF-8 (#2185) 2022-10-25 12:29:36 -07:00
Allen Byrne
ea902f9ace
Implement option for using CMake GNUInstallDirs (#2175)
* Implement option for using CMake GNUInstallDirs

* Add release notes
2022-10-25 08:50:43 -07:00
Allen Byrne
a322eb6147
Fix static-cast format (#2141)
* Fix static-cast format

* clang format fix
2022-10-04 08:31:46 -05:00
Allen Byrne
c114bd64b0
Fix mostly java warnings, and cpp cast (#2134) 2022-10-03 13:31:32 -05:00
Allen Byrne
c8fdd92cd4
Update CMake code to 3.18 minimum version (#2080)
* Update CMake code to 3.18 minimum version

* Updated release note
2022-09-02 17:31:29 -07:00
Dana Robinson
7f6261a677
Removes cmake_ext_mod (files moved to cmake) (#2041)
At one time this content was a git submodule shared between several
projects but that time has long passed.
2022-08-19 07:54:42 -07:00
bmribler
951566a4ad
Fix cpp comment (#2011)
* Fix test failure

Description:
    - Added two H5File constructors to open file with non-default fapl
    - Added non-default fapl to test functions
    - Commented certain renaming attribute tests because of the unexpected
      behavior in renaming an attribute (HDFFV-11327)

Platform tested:
    Linux/64 (jelly)

* Committing clang-format changes

* Update H5File.cpp

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2022-08-16 14:06:55 -07:00
bmribler
10e4dd4ef1
Fix c++ test failure (#2005)
* Fix test failure

Description:
    - Added two H5File constructors to open file with non-default fapl
    - Added non-default fapl to test functions
    - Commented certain renaming attribute tests because of the unexpected
      behavior in renaming an attribute (HDFFV-11327)

Platform tested:
    Linux/64 (jelly)

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2022-08-12 13:33:30 -05:00
Larry Knox
25ef534039
Update version to 1.13.3-1 after creating hdf5_1_13_2 branch for 1.13.2 (#2004)
release.
Added new version to exceptions in line 75 of src/H5.c.
2022-08-12 08:17:25 -05:00
Larry Knox
029cde6111 Revert "Increment version to 1.13.3-1 after creating hdf5_1_13_2 branch for release"
This reverts commit c58558e872.

H5TEST-tcheck_version-release failed.
2022-08-11 22:45:43 -05:00
Larry Knox
c58558e872 Increment version to 1.13.3-1 after creating hdf5_1_13_2 branch for release
of HDF5 1.13.2.
2022-08-11 22:15:46 -05:00