Commit Graph

2428 Commits

Author SHA1 Message Date
Allen Byrne
8190a5e4b3 [svn-r24408] Add compound integer tests files
Tested: local linux cmake
2013-11-06 13:28:12 -05:00
Allen Byrne
132dfca7d0 [svn-r24403] Cleanup temp test files 2013-11-04 16:12:29 -05:00
Elena Pourmal
7aa4a180e4 [svn-r24400] Maintenance: When the libraries are built and tested in place, several files are left
behind by "make distclean" (see below); modified appropriate Makefile.am files and ran
             bin/reconfigure to create Makefile.in to fix the problem.

Here is the list of the files "make disclean" doesn't remove:

       tools/h5dump/testfiles
       tools/h5repack/testfiles/h5diff_attr1.h5
       tools/h5repack/testfiles/tfamily00000.h5
       tools/h5repack/testfiles/tfamily00010.h5
       tools/h5repack/testfiles/tfamily00002.h5
       tools/h5repack/testfiles/tfamily00004.h5
       tools/h5repack/testfiles/tfamily00006.h5
       tools/h5repack/testfiles/tfamily00008.h5
       tools/h5repack/testfiles/tfamily00001.h5
       tools/h5repack/testfiles/tfamily00003.h5
       tools/h5repack/testfiles/tfamily00005.h5
       tools/h5repack/testfiles/tfamily00007.h5
       tools/h5repack/testfiles/tfamily00009.h5
       tools/h5jam/testfiles/h5jam-ub-nohdf5.txt.err-sav
       tools/h5jam/testfiles/h5jam-help.txt.err-sav
       tools/h5jam/testfiles/h5unjam-help.txt.err-sav
       tools/h5jam/testfiles/h5jam-ub-nohdf5.txt.out-sav
       tools/h5jam/testfiles/h5jam-help.txt.out-sav
       tools/h5jam/testfiles/h5unjam-help.txt.out-sav
       hl/fortran/test/dsetf5.h5
       c++/test/tattr_multi.h5
       c++/test/tattr_scalar.h5
       c++/test/tfattrs.h5
       c++/test/tattr_basic.h5
       c++/test/tattr_compound.h5
       c++/test/tattr_dtype.h5

Tested on jam and emu in place and using srcdir with the svn stat command.

This fix doesn't address two problems:

tool/h5dump/testfiles directory is not removed by "make distclean" and it should be
tools/misc/testfiles directory is removed by "make distclean" and it shouldn't be
2013-11-02 20:21:23 -05:00
Allen Byrne
819b8099e2 [svn-r24392] Cleanup testfiles from scripts. Update lists of files to be cleaned. CMake update to clean testfiles.
Tested: local cmake, autools, and h5committest
2013-11-01 16:15:37 -05:00
Dana Robinson
e6cace9ee4 [svn-r24376] Updated all code to use HDmalloc, HDcalloc, and HDfree.
Prep work for adding a memory free function, part of HDFFV-8551.

Tested on:
    32-bit LE linux (jam) 
        * with C++, Fortran
        * with thread safety on

    These are minor changes (almost entirely renaming foo functions
    to HDfoo) that don't change functionality.  This should not
    require a full commit test.
2013-10-30 23:20:36 -05:00
Larry Knox
06aa7b6641 [svn-r24285] Eliminate several "passing argument ... with different width due to prototype" warnings by casting constants to size_t where expected by string functions.
Tested on jam, koala,ostrich and platypus with h5committest.
2013-10-10 16:57:04 -05:00
Mohamad Chaarawi
9d954e1136 [svn-r24270] checkin coverity changes from 10/4/2013.
tested with h5committest
2013-10-09 11:55:33 -05:00
Allen Byrne
4611f95d4c [svn-r24224] HDFFV-8529: Space separate define strings
Tested: h5committest
2013-09-30 11:52:03 -05:00
Larry Knox
ab239810e1 [svn-r24194] Don't add hdf5 library dependencies to lib files when --disable-sharedlib-rpath configure option is invoked. Fix for HDFFV-8276.
Tested with h5committest and on hdf-duck.
2013-09-23 20:14:24 -05:00
Allen Byrne
c965b5503b [svn-r24172] Position trunk/1.8 vars in similar location for comparison. 2013-09-19 14:42:45 -05:00
Allen Byrne
0653325f0d [svn-r24167] HDFFV-8513, HDFFV-8522 Plugin testing in h5repack, h5dump.
Add more usage info for UserMacros.
Add new option information about the Plugin default path.

Tested: local linux, jam
2013-09-19 11:38:08 -05:00
Allen Byrne
a8c63e28d5 [svn-r24138] Cast constants to specified type.
Cast smaller vars to larger type.
Cast calculation result to correct type.
Changed int member to hbool_t

Tested: local linux
2013-09-13 16:11:30 -05:00
Allen Byrne
3c021d3a77 [svn-r24137] Cast constants to specified type.
Cast smaller vars to larger type.
Cast calculation result to correct type.

Tested: local linux
2013-09-13 15:34:55 -05:00
Allen Byrne
2465c432f0 [svn-r24124] HDFFV-8345: Changed usage txt to use dsetN instead ofletters for objects in examples.
Tested: local linux
2013-09-11 12:09:06 -05:00
Allen Byrne
175e82e484 [svn-r24120] HDFFV-8345: plugin test properly checks static-exec result to include test.
Tested: jam
2013-09-10 09:24:34 -05:00
Allen Byrne
a1071ada16 [svn-r24118] Comment out test until configure sets conditional correctly 2013-09-09 17:43:57 -05:00
Allen Byrne
f79eac6049 [svn-r24116] Correct indentation and create single exit point.
Tested : local linux
2013-09-09 13:30:25 -05:00
Larry Knox
6b54dac504 [svn-r24115] Reduce warnings for conversions of different widths.
h5committested on jam, ostrich, koala, and platypus.
2013-09-06 17:48:28 -05:00
Allen Byrne
145f1ce9e3 [svn-r24104] HDFFV-8345: add User Defined filters to h5repack.
Reviewed in H5T-61

Tested: local linux - cmake and autotools
2013-09-06 10:15:50 -05:00
Quincey Koziol
5b876c929f [svn-r24101] Description:
Clean up warnings, enable new compiler warning flag(s) and bring back
changes from Coverity branch:

r20813:
Remove the dead code as listed for coverity bug #1722. h5committested.

r20814:
Issue 69: Check return value and throw error if negative return. Also free datatype id on error

r20815:
Use HDstrncpy. --gh

r20816:
Replaced one last HDstrcat call with HDstrncat to resolve coverity issue 832.

r20817:
Use HDstrncpy and HDstrncat. --gh

r20818:
Purpose: Fix valgrind issues with h5jam

Description:
Modified h5jam to free strings strdup'd in parse_command_line before exit. Note
that they may still not be freed in case of error, due to the widespread use of
exit().

r20819:
Issue 80: change loop to use int as loop index.

r20820:
Maintenance: Fixed the bug found by coverity CID 788
There were two problems with this function:
    1) it tried to unnecessary free NULL pointer
    2) it tried to allocate c_name buffer that is done by H5Pget_class_name


Tested on:
    Mac OSX 10.8.4 (amazon) w/gcc 4.8.1, C++ & FORTRAN
    (too minor to require h5committest)
2013-09-05 15:44:14 -05:00
Larry Knox
d24404ae83 [svn-r24077] Updated -help output for compile scripts for changing default from -noshlib to -shlib when hdf5 is built without static libraries (--disable-static).
Tested with h5committest on jam, koala, ostrich and platypus.
2013-08-27 08:26:37 -05:00
Allen Byrne
68dd16d8f0 [svn-r24066] Eliminate switch default warning by printing err message. 2013-08-23 15:02:32 -05:00
Allen Byrne
d2e10eefd7 [svn-r24058] Coorect usage text wrt dataset subsetting 2013-08-22 15:16:45 -05:00
Allen Byrne
e86655bbf4 [svn-r24057] Add --superblock long name to parser and add tests for both --boot-block and --superblock.
Tested: local linux
2013-08-22 14:57:31 -05:00
Allen Byrne
13a0f5576a [svn-r24053] HDFFV-8498: --minimum option was disabled by HDFFV-8214. Reverted code change and changed default to 0 from 1024. Changed limit test to use h5dump to compare repacked file instead of h5diff.
Corrected test scripts for test folder path

Tested: h5committest and local linux with CMake
2013-08-21 17:11:32 -05:00
Allen Byrne
8c14af82c6 [svn-r24050] HDFFV-8498: --minimum option was disabled by HDFFV-8214. Reverted code change and changed default to 0 from 1024. Changed limit test to use h5dump to compare repacked file instead of h5diff.
Tested local linux with CMake
2013-08-21 15:59:49 -05:00
Quincey Koziol
482a9c28e7 [svn-r24030] Description:
Clean up more compiler warnings.

Tested on:
    Mac OSX/64 10.8.4 (amazon) w/gcc, C++ & FORTRAN
    (too minor to require h5committest)
2013-08-19 17:13:15 -05:00
Allen Byrne
c502d81a8c [svn-r24029] Move TESTS to seperate file to allow easier editing by all developers.
Tested: local linux
2013-08-19 16:49:44 -05:00
Allen Byrne
b503983d85 [svn-r24023] Added tests to CMakeLists.txt that were only added to the *nix script.
Tested: local linux
2013-08-19 11:26:14 -05:00
Allen Byrne
28c2f17960 [svn-r24022] any_object option should be any_path 2013-08-19 11:02:29 -05:00
Quincey Koziol
308c378ccd [svn-r24020] Description:
Clean up compiler warnings

Tested on:
    Mac OSX/64 10.8.4 (amazon) w/C++ & FORTRAN
    (too minor to require h5committest)
2013-08-17 15:05:27 -05:00
Vailin Choi
170b7275c0 [svn-r24015] A bug fix when merging changes from the trunk to 1.8 for h5stat bug fix HDFFV-1238:
Fix a problem when using opt_arg that is NULL for the new options added: -l N, -m N, -a N.
h5committested.
2013-08-16 14:36:32 -05:00
Quincey Koziol
453f95c192 [svn-r24011] Description:
Clean up a few warnings

Tested on:
    Mac OSX 10.8.4 (amazon) w/C++ & FORTRAN
    (too minor to require h5committest)
2013-08-15 08:24:28 -05:00
Allen Byrne
e8d0919d43 [svn-r24002] Fix 32-bit and valgrind issues with new handle_paths code - correct math of adding a NULL to a string.
Tested: local linux (valgrind) and h5committest
2013-08-13 12:48:57 -05:00
Allen Byrne
4935d0bfab [svn-r23999] Move declaration to top of block - fix for windows. 2013-08-13 08:44:24 -05:00
Allen Byrne
5d0b400f69 [svn-r23996] HDFFV-7989: Add any_path option to search the file for paths. New test added, scripts updated, help text updated.
Tested: local linux
2013-08-12 16:58:31 -05:00
Allen Byrne
a3204d77e7 [svn-r23994] Correct printf % handling 2013-08-12 15:53:54 -05:00
Allen Byrne
f801cf4618 [svn-r23991] Reorder grouping 2013-08-12 14:52:09 -05:00
Vailin Choi
f09101079e [svn-r23976] The following files were missing from previous checkin rev #23975 for bug HDFFV-1238.
h5committested.
2013-08-08 14:19:03 -05:00
Vailin Choi
c902bbdd90 [svn-r23975] This checkin contains--
A) Fix for HDFFV-1238:
   --Add 3 new options to allow users in setting threshold for small groups/datasets/attributes (tools/h5stat/h5stat.c)
   --Generate new test file for testing the new options (tools/h5stat/h5stat_gentest.c)
   --Add tests for the new options (tools/h5stat/testh5stat.sh.in)
   --Update expected output files (tools/h5stat/testfiles/*.ddl)
B) Fix a bug in determining maximum dimension size for 1-D dataset in dataset_stats() (tools/h5stat/h5stat.c)
2013-08-08 12:24:43 -05:00
Larry Knox
bf9b274e27 [svn-r23964] Corrected "continuous" layout to "contiguous in h5repack -h output and comment.
Jira issue HDFFV-8493.

No test - text only change.
2013-08-02 16:23:39 -05:00
Allen Byrne
7a96201ee1 [svn-r23960] HDFFV-8490: Reorder and group h5dump help text.
Tested: local linux
2013-08-01 09:42:30 -05:00
Allen Byrne
4e1695576c [svn-r23953] Update stream handling to allow binary mode - due to unjam fix.
Tested: local linux
2013-07-31 11:22:40 -05:00
Allen Byrne
ba181d404d [svn-r23952] Update unjam file handling to eliminate infinite loops and use binary mode.
Tested: windows
2013-07-31 11:10:33 -05:00
Peter Cao
5b6ae0b603 [svn-r23945] fixed HDFFV-8306
using file stream for output data
2013-07-30 14:23:24 -05:00
Allen Byrne
ad7624ada3 [svn-r23944] Move stream functions into tools lib.
Tested: local linux
2013-07-30 12:04:23 -05:00
Albert Cheng
3a316cfc63 [svn-r23917] Bug fix: HDFFV-8392
tools/h5diff/testh5diff.sh is run in every "make check", even after it
has passed in the previous run.
The error was in the previous change made to Makefile.am
when testh5diff.sh.in was created.  The mistake was in the
SCRIPT_DEPEND=h5diff$(EXEEXT) $(H5PDIFF) $(srcdir)/testh5diff.sh
$(srcdir)/testh5diff.sh no longer existed. It is now generated in the
current built directory from $(srcdir)/testh5diff.sh.in (which configure
takes care of).

I updated the dependance to
SCRIPT_DEPEND=h5diff$(EXEEXT) $(H5PDIFF) testh5diff.sh
and that fixes the error.

Reviewed: HDF5-149

Tested: h5committested.
2013-07-18 00:12:27 -05:00
Mohamad Chaarawi
dfcb3cebf1 [svn-r23862] Change printfs in perform output and h5dump to prevent overflow.
This fixes: https://jira.hdfgroup.uiuc.edu/browse/HDFFV-8450

Tested on Jam.
2013-07-03 11:12:32 -05:00
Allen Byrne
a4dc3ff34d [svn-r23830] HDFFV-8476: Add the optional arg to the help usage text.
Tested: local linux
2013-06-26 16:28:13 -05:00
Allen Byrne
308106c0e9 [svn-r23829] HDFFV-8134: allow exclusion of attributes. This implements the technique and creates a test. Help changes will be added after trunk tests pass the test cycle.
Tested: local linux
2013-06-26 16:04:20 -05:00