Purpose:
update install document for windows
Description:
If user wants to remove zlib, they have to remove two lines that define
H5_HAVE_LIBZ and H5_HAVE_COMPRESS2 in both H5config.h and *H5pubconf.h*.
Solution:
add "H5pubconf.h" in the document
Platforms tested:
new test
Description:
Added two new tests.
test_mpio_offset:
Verify that MPI_Offset exceeding 2**31 can be computed correctly.
test_mpio_gb_file
Test if MPIO can write file from under 2GB to over 2GB and then
from under 4GB to over 4GB.
Platforms tested:
modi4(-64), tflops.
Update
Description:
Remove the doc from the SUBDIRS macro since we don't have to go to
that directory for all make options. Add doc to the "cleaning"
actions...
Platforms tested:
Linux
Description:
dsets.cpp:
- Added routine's headers to be consistent with the C tests
- Added the following tests (they are not in the C version
test because they are C++ specific):
+ Test copying a user-defined type using DataType::copy
+ Test copying a user-defined type using DataType::operator=
+ Test copying a user-defined int type using DataType::operator=
+ Test copying an integer predefined type using a constructor
+ Test copying an integer predefined type using DataType::operator=
th5s.cpp:
- Added routine's headers to be consistent with the C tests
- Cleanup old couts and statements used during debugging
Platforms tested:
arabica (sparc-sun-solaris 2.7)
Description and Solution:
- Predefined type objects become outdated when the application calls
H5close and then H5open to use the library again.
Solution:
+ Reimplemented PredType using enum type to obtain up-to-date
values for predefined types, i.e. H5T_xxx_yyy's, when they
are used.
+ Added to PredType its own version of getId() to return the
appropriate predefined type id according to the enum value.
+ Made IdComponent::getId() a virtual function
- Since Albert already fixed the "multiply defined RcsId" problem,
removed the now become unnessary "#undef RCSID" from H5Include.h
- Added a check for func_name != NULL in one of the Exception
constructors because seg. fault. might occur in some situations.
- It is more convenient to make a copy of a datatype, dataspace,
or property list by using assignment operator
Solution:
+ Added assignment operator to DataType, DataSpace, and
PropList so that they will invoke H5Tcopy, H5Scopy,
and H5Pcopy, respectively, instead of just simply
copying the data members as for other classes. So,
now a type, space, or property list can be copied by
either :
mytype = original_type, or
mytype.copy(original_type)
Note that copy constructors are still just copying the
data members.
+ Added an assignment operator to DataType that takes a
predefined type.
+ Made IdComponent::operator= a virtual function
Platforms tested:
arabica (sparc-sun-solaris 2.7)
Bug Fix
Description:
Create a Makefile in the testpar/ directory only if PARALLEL is
enabled.
Solution:
Set a macro to the testpar/Makefile for the generation script.
Update
Description:
Applied fix to h5dumper which was applied to the 1.4 branch. Done
just before creating subdirectories in the 1.4 branch.
Platforms tested:
Linux
Updated
Description:
Updated test results for the h5dumper's XML option. The tool now
conforms with the fixes implemented in the 1.4 branch.
Platforms tested:
Linux
Bug fix (sort of)
Description:
The RCSID string in H5public.h was causing the C++ code problem as it
was included multiple times and C++ did not like multiple definitions
of the same static variable.
Solution:
Since we don't really make use of the RCSID strings as we have not
installed it in all source files, we decided to remove it.
Platforms tested:
eirene (linux), modi4 (IRIX64-64) both serial and parallel modes.
Improvement
Description:
Changed the default value of $NPROCS from 2 to 3. This is the
value libSAF uses since 3 processes have a much bigger chance
catching parallel errors than just 2 processes.
Changed the default dataset sizes from 800 to 1200 so that it is
a multiple for 3 (and 8 too which is ofter used in the Tflops test.)
Platforms tested:
Modi4 (IRIX64) both serial and parallel modes.
Improvement
Description:
Changed the default value of $NPROCS from 2 to 3. This is the
value libSAF uses since 3 processes have a much bigger chance
catching parallel errors than just 2 processes.
Platforms tested:
Modi4 (IRIX64) both serial and parallel modes.
adjustment
Description:
When gondolin failed the 1.5 test, it moved ahead for the 1.4 test.
The 1.5 test usually takes 1 hour to complete but runtest only waited
30 minutes for the 1.4 cvs update to complete. So, gondolin ended
up failing the 1.4 test too.
Solution:
Changed the wait time to 90 minutes.
Added echo statements showing it is waiting for some event. This
would help the human knowing it is waiting for something.
Added more comments about the algorithm of the waiting.
Platforms tested:
Gotta be right. :-)
Bug Fix
Description:
Partial hyperslabs which exactly fit the size of the lowest dimension of
a chunked dataset weren't being output correctly.
Solution:
Forgot to divide the offset (seq_len) by the size of the lower dimension
hyperslabs - fixed now.
Platforms tested:
FreeBSD 4.2 (hawkwind)
Code cleanup
Description:
Binh-Minh found several places where parameters and/or return-values in the
tests were not matching the current parameters for functions in the library.
Solution:
Walked through the code and aligned the parameters and return-values with
the current functions.
Platforms tested:
FreeBSD 4.2 (hawkwind)
Purpose:
Maintenance
Description:
[describe the bug, or describe the new feature, etc]
Solution:
Added comment block to each subroutine.
Platforms tested:
NONE, do it later.
Purpose:
[is this a bug fix? feature? ...]
Description:
[describe the bug, or describe the new feature, etc]
Solution:
[details about the changes, algorithm, etc...]
[Please as detail as you can since your own explanation is
better than others guessing it from the code.]
Platforms tested:
[machines you have tested the changed version. This is absolute
important. Test it out on at least two or three different platforms
such as Big-endian-32bit (SUN/IRIX), little-endian-32(LINUX) and
64-bit (IRIX64/UNICOS/DEC-ALPHA) would be good.]
Purpose:
Windows port and maintenance
Description:
Each C function called from F90 subroutine requires explicit
interface. Some drivers functions were not implemented.
Solution:
Added interfaces and comment blocks to each F90 subroutine.
Added the following subroutines:
h5pset(get)_fapl_core_f
h5pset(get)_fapl_family_f
h5pset_fapl_sec2_f
h5pset_fapl_stdio_f
Platforms tested:
Linux (eirene) to make sure that code still works on UNIX.
More UNIX platforms will be tested before moving to Windows.
Feature Add
Description:
This is the first (alpha) version of h5tools which does subsetting
according to the subsetting document. There's still some niceties
which need to be worked out, but this is the ground work.
Platforms tested:
Linux
Bug Fix
Description:
Some of the modules weren't being compiled cause they weren't added
to the TEST_OBJ macro.
Solution:
Added them to the TEST_OBJ macro a la the C tests.
Platforms tested:
Linux
Bug Fix
Description:
For some reason, the H5FDstream.h file was defined not once, not
twice, but three whole times in the install part...
Solution:
Removed all but one of those.
Purpose:
Adding data file for testing
Description:
The dataspace test, th5s.cpp, needs this data file.
Solution:
Added the file, using the copy of hdf5/test/th5s.h5
Platforms:
arabica (sparc-sun-solaris 2.7)
Bug Fix
Description:
On the Nersc machines, the install-sh script wasn't being found in
the proper place.
Solution:
Corrected the "fix" I put in there awhile ago. Essentially, if the
INSTALL macro is the program "install-sh" with anything around it,
then we assume they want our install-sh program and force the
Makefiles to find it in the hdf5/bin directory.
Platforms tested:
Nersc.
Purpose:
1) warning eliminatation
2) windows projects rearranging fit for the reorientation of various tools under
/hdf5/tools directory in the cvs tree
Description:
1) fix the long time repetative warnings of
"LINK : warning LNK4098: defaultlib "LIBC" conflicts with use of other libs; use /NODEFAULTLIB:library"
2) fixing h4toh5testrun.bat and dumptest.bat so that new h5dump-xml can be run on windows and new
h4toh5 test files
3) adding h4toh5test.dsp project
Solution:
Platforms tested:
windows 2000
Purpose:
Improve C++ API test output appearance
Description:
The C++ API tests are not easy to be spotted because their output
look similar to part of the C tests.
Solution:
Added "C++ API:" in front of the C++ test titles.
Platforms tested:
arabica (sparc-sun-solaris 2.7)
Bug Fix.
Description:
Kent is correct about the malloc error. It's harmless if it's not
needed anyway.
Solution:
Removed the #ifdef's since all platforms should use this.
Platforms tested:
Linux
Purpose:
fixing the format of dumper output for windows test
Description:
New dumptest includes the feature that an error of the output will be put into stderr in linux
On windows, that stderr will not be redirected into the output file and the comparsion between the expected file and the dumper output is not correct.
Solution:
change fprintf(stderr .....) at h5tool_util.c into fprintf(stdout ......) so that it fits the comparison.
Platforms tested:
windows 2000
Purpose:
a bug fix on windows(possible on other platforms)
Description:
not allocating enough space for a string at dump_all for debug version
a string tmp is defined at dump_all(....),
The memory that is allocated to tmp is malloc(strlen(prefix)+strlen(name)+1);
However, there is one testing case : strlen(prefix) is 0 and
tmp is allocated in the following:
strcat(tmp,"/");
strcat(tmp,name);
....
free(tmp);
the program fails when freeing tmp for debug (dll) version on windows 2000
Solution:
For windows platform:
allocate memory strlen(prefix)+strlen(name)+2
Platforms tested:
[machines you have tested the changed version. This is absolute
important. Test it out on at least two or three different platforms
such as Big-endian-32bit (SUN/IRIX), little-endian-32(LINUX) and
64-bit (IRIX64/UNICOS/DEC-ALPHA) would be good.]
Purpose:
Format and typos mostly
Description:
Changed the "Copyright" header of some files so they will be consistent.
Platforms tested:
arabica (sparc-sun-solaris 2.7)
Purpose:
These changes allow the user to determine bytes requested and bytes
received by MPI I/O calls.
Description:
User wished to know if the number of bytes requested in MPI I/O calls was
save as the number actually received.
Solution:
Added additional fields to the HDFrecord structure for bytes requested and
bytes received. Other files reflect these changes.
Platforms tested:
Solaris
IRIX64 parallel
new feature
Description:
Added a new option -nocvs for no cvs commands.
Added a locking mechanism to show CVS checkout in progress
and other hosts should wait till it is done.
Platforms tested:
gondolin
Purpose: Usability enhancement
Description:
- Added more information about the failure to all the throw's,
i.e, member function name and more detail about the failure, where
appropriate. Also, added exception throws for private functions,
such as p_close to provide more specific details.
- Added two api functions: Exception::getFuncName() and
Exception::getCFuncName() to provide the name of the member
function where failure occurs.
- Fixed some typos, one of which caused segn. fault in some
situations (resetIdComponent was accidentally called twice
in a couple of places :)
Platforms:
arabica (sparc-sun-solaris 2.7)
Purpose:
a bug fix
Description:
uninitialize the start and edge value for test_ras8 and test_ras24 functions
Solution:
initialize
Platforms tested:
eirene,arabica
Hack
Description:
Need to install the files in the examples/java directory, however
they include installing a Makefile. This was causing havoc with our
Makefile/configure system.
Solution:
Changed so that you can specify a "SUBDOCDIR" which will create a
subdirectory for you and fill it with files specified in PUB_SUBDOCS.
Platforms tested:
Linux
Bug Fix
Description:
Removed generation of the Makefile in the
doc/html/Tutor/examples/java directory since they ahve their own
Makefile which is actually distributed with the documents.
Platforms tested:
Linux
