* commit 'e916acd018d5a307e7690a7978a1b73e83508f2b':
Move the GNU warnings configuration under config/gnu-warnings/ and trim the filename prefixes. Update config/gnu-flags to suit.
By default, demote warnings promoted to errors back to warnings.
Incorporate the H5_ECFLAGS into the library CFLAGS. Now a bunch of errors will occur. Next commit will demote the warnings promoted to errors back to warnings again.
Break out warnings into more files that autoconf and CMake can share. This change temporarily disables the warnings that were promoted to errors, but I will add those warnings back as warnings, not errors, in the next commit.
* commit '2f09d8f3c8a4a44932c1b8ffb0f6ea2219059a5c':
Move the GNU warnings configuration under config/gnu-warnings/ and trim the filename prefixes. Update config/gnu-flags to suit.
By default, demote warnings promoted to errors back to warnings.
Incorporate the H5_ECFLAGS into the library CFLAGS. Now a bunch of errors will occur. Next commit will demote the warnings promoted to errors back to warnings again.
Break out warnings into more files that autoconf and CMake can share. This change temporarily disables the warnings that were promoted to errors, but I will add those warnings back as warnings, not errors, in the next commit.
* "Simultaneous and equivalent" Read-Write and Write-Only channels for
file I/O.
* Only supports drivers with the H5FD_FEAT_DEFAULT_VFD_COMPATIBLE flag for
now, preventing issues with multi-file drivers.
Add Mirror VFD to library.
* Write-only operations over a network.
* Uses TCP/IP sockets.
* Server and auxiliary server-shutdown programs provided in a new directory,
`utils/mirror_vfd`.
* Automated testing via loopback ("remote" of localhost).
* commit '38d3834c54ee1dfa7366ae1c581909f0cf7fa000':
Add another warning variation
Correct ignore warnings
Only use sanitizer with Clang
Remove cmake macros from valgrind tests
* commit '590aaff33046df99a4d88ba59e4b461e060b36e4':
Optimized the floating point comparisons a little bit.
Fix for failing h5diff tests involving floating-point compares.
Removed H5_DEC_ENUM
Revert "Revert "Moved -Wunsuffixed-float-constants to the developer warnings.""
Revert "Moved -Wunsuffixed-float-constants to the developer warnings."
Moved -Wunsuffixed-float-constants to the developer warnings.
Fixed a bug in testpar/t_cache.c concerning checking expected vs. actual cache entry reads and writes.
* commit '66a94df13b3801547523f1ea90bc84fe2ee6824b':
Removed UIUC from copyright, added helpful comment.
Updated MANIFEST
Added a config file for ARM (Tested on a Raspberry Pi 3B+ w/ gcc 6).
Tidying from code review.
Fixed stack and frame size warnings. Not complete, but fixes most of the easier cases.
* commit '1a50056dafc8e22facda675acb43a71705fdd15c':
Changed -Wformat-truncation to level 2 in CMake w/ gcc.
Changed -Wformat-truncation's level from 2 to 1.
* commit '0772b975d1d2bfa15aedeb4b6e2c2aac78c61a2f':
Fix missing free in H5T__ref_mem_read()
Fix bugs in H5VL file comparison code. Add short circuit success to H5VL_cmp_connector_cls().
Implement file comparison VOL callback. Other changes to allow references to work with non-native connectors. There is a bug somewhere.
Add support for point selections to H5S_select_project_intersection.
Remove H5VL_NATIVE_FILE_GET_FILE_ID and add H5VL_OBJECT_GET_FILE
Revert "Make a squash commit of 'Quiet some warnings by adjusting warnings level and fixing some code.' (commit 5c911d8baf)"
Revert "Oops, remove more C99 designated initializers for VS 2010 compatibility."
H5R: fix H5Tconv to check for null references
Trivial parameter renaming in VOL API calls.
Move checking for zero offset in selection adjust calls to the selection callbacks. This makes the procedure for checking it consistent across selection types and between _s and _u, ensures it is always is performed even when called within the H5S package, and removes the redundant check that would occur when callins H5S_select_adjust_s() from outside the H5S package.
Replace H5Sselect_adjust_u() and H5Shyper_adjust_s() with H5Sselect_adjust. Implement "adjust_s" callback for all selection types. Add range checking to H5Sselect_adjust().
* commit 'a8892bb42d6f6e4fbc30fae0eb2b957f81c938b9': (45 commits)
Oops, remove more C99 designated initializers for VS 2010 compatibility.
Add an #include to get a function declaration.
Don't use C99 designated initializers, they're not compatible with Visual Studio 2010.
Quiet some more maybe-uninitialized warnings---each is a false positive, *sigh*. This is more code that may not compile with VS2010, *sigh sigh*.
Always warn on maybe-uninitialized. -Wincompatible-pointer-types was not available until GCC 5, so enable it only if that's the GCC version we're using.
Only promote maybe-uninitialized warnings to errors on GCC 8. Even on GCC 8, there may be false positives at low optimization levels? I need to check.
Only use -Werror=cast-function-type with GCC 8 and later.
Put all of the -W options back into the order I found them in so that it's easier to compare old and new config/gnu-flags.
Add new source files to CMakeLists.txt.
Mention the -Werror= flags in libhdf5.settings.in.
free -> HDfree
Promote decleration-after-statement warnings to errors.
Quiet decleration-after-statement warnings.
Move a statement under some declarations since some vintages of Visual Studio don't like declarations after statements.
Document H5D__chunk_mem_xfree_wrapper().
Undo accidental test deletion.
Oops, delete a debug printf that snuck in here.
Undo my changes to the HD macros, hadn't really intended those to be on this branch....
Make errors of some more warnings. Move disabled warnings to DEVELOPER_WARNING_CFLAGS. Put just one warning option on a line, and sort some of the options.
Cast to the parameter type, H5VL_token_t *, instead of to unsigned char *.
...
* commit '0b721858e46a317c370a24115032d5be41688f67':
Make these scripts relocatable again: derive a relative path for the original installation prefix from the examples prefix. Use that relative path to locate the current installation prefix, always. Fall back to an absolute installation prefix if the relative path cannot be derived.
Get the path to prefix right: needs a ../ to back out of subdirectory c/.
Make this script relocatable again: derive a relative path for the original installation prefix from the examples prefix. Use that relative path to locate the current installation prefix, always. Fall back to an absolute installation prefix if the relative path cannot be derived.
Let us override the examples directory using --with-examplesdir=DIR. This is handy for NetBSD where HDF5 examples are installed by convention in $prefix/share/examples/hdf5/ rather than in ${prefix}/share/hdf5_examples/, which is the HDF5 default.
Follow longstanding execv convention for compatibility with NetBSD.
Under the examples directories, always find the installed HDF5 executables and scripts using @prefix@ instead of a relative path, because the number of ../ in the relative path will be different on NetBSD than on other systems.
Make the HDF5 configure script grok NetBSD.
For portability, insulate the HDF5 library from some system macros.
Not every system has perl installed in /usr/bin/, so change the shebang (#!) line to `/usr/bin/env perl` to locate perl on the PATH.
For portability, use the POSIX sh(1) string-comparison operator `=` instead of `==`.
* commit 'aeb145428f5e6bc51742fff031b0cf8cf6fbefbb':
Updated h5trav.c to emit output that doesn't require ddl changes for map support.
Fixed Map API CMake option
Renamed H5Mdelete_key to H5Mdelete and H5Mset to H5Mput.
Added ifdef for intel compilers, __GNUC__ has to be defined for header files which use it to work with intel compilers. This gives a warning for intel compiler about fallthrough, so added a check not to include fallthrough if using intel compilers.
Added the map (H5M) API
* commit '4227b8948d7091205b4f8dc1271d7dcae01bb0fb':
Reverts the removal of config/conclude_fc.am while keeping the changes to config/gnu-fflags.
Fixed a couple of typos.
* commit 'd169391529f253a9903b8e6cacf38c59ceefab07':
Parallel Fortran tests now use the MPI module instead of including mpif.h.
First stab at gfortran versions. Tested on gfortran 7-9 so far.
Moved the -std=f2008 option to gfortran 9 for now.
Updated gfortran options. * Removed conclude_fc.am, which was causing verbose builds. Need to investigate more, though. * Added gfortran 9 warnings and flags. This will need to be separated into other version blocks based on when the options first appeared. * The standard is now explicitly set at 2008.
* commit '7d291d059da6287f769951c4854c566da0b93ce8':
Parallel Fortran tests now use the MPI module instead of including mpif.h.
First stab at gfortran versions. Tested on gfortran 7-9 so far.
Moved the -std=f2008 option to gfortran 9 for now.
Updated gfortran options. * Removed conclude_fc.am, which was causing verbose builds. Need to investigate more, though. * Added gfortran 9 warnings and flags. This will need to be separated into other version blocks based on when the options first appeared. * The standard is now explicitly set at 2008.
* commit 'f97e11e7635a0cd8728d4604ca5dceb3925ba44c':
Update comment and check for strtoumax.
Modify CMakeLists.txt file for renamed h5tools_test_utils files.
Add HD to string functions. Switched strtoul to strtoumax in H5FDs3comms.c. Removed unused functions and variables in s3 and hdfs TestH5Pfapl*.java. Update Copyright headers.
Squashed commit of the following:
* Removed conclude_fc.am, which was causing verbose builds. Need to
investigate more, though.
* Added gfortran 9 warnings and flags. This will need to be separated
into other version blocks based on when the options first appeared.
* The standard is now explicitly set at 2008.
* commit 'c348d453b583ec9092152e6aef1f7fa9854cf5d9':
Correct H5DIFF to PH5DIFF in *ctestS.sl.in.cmake list of parallel tests reserved for *ctestP.sl.cmake. Revise options to run batch tests and alternative options for cross compile in HPC/*-HDF5options.cmake.
Change examples file to zip for CMake zip file.
Update bin/release for filename changes and HPC-CMake tar file corrections.
Add new files to MANIFEST. Update permissions for raybsub to 755.
* commit '055208b71c573be3d4b1047b840d4d8b255bc25e':
Minor tweak to CMake preadwrite entry.
Updated sec2, log, and core VFDs to use pread/pwrite when available (can be controlled via a configure/CMake option)
Add script raybsub to handle submitting .lsf files on ray with bsub <
script.lsf syntax that we couldn't handle with CMake.
Add hpc-cmake-tgz option for bin/release.
machines (where tests are to be run as batch jobs.
Add README_HPC file with instructions for setting up configuration
to use batch scripts for running tests on HPC machines and some
pointers for cross compiling.
* commit 'b02de315b93ac29d2483a91d526b110a25073505':
NNSA Tri-LabsTRILAB-98: Another two test cases out.
NNSA Tri-Labs TRILAB-98: Taking out a few more test cases.
NNSA Tri-Labs TRILAB-98 dt_arith and cpp_testhdf5 tests fail on sierra.llnl.gov: According to the group decision, simply provide a macro to disable some failing test cases on sierra (IBM power9 cpu). All failing cases involve long double data type.
* commit '0e34f0feaaeb6d2286f87f695f25fae45c070a42': (26 commits)
HDFFV-10664 update reference file
HDFFV-10664 update reference files
HDFFV-10664 add missing function and check for restriction
Remove "bad" statements at end of TEST_ERROR. Formerly arguments to FAIL_PUTS_ERROR
Add RELEASE.txt entry for HDFFV-10596.
Add semicolon at end of TEST_ERROR() invocation for consistency.
Uninstall should remove the libhdf5_hl_fortran links.
Add symlinks named libhdf5_hl_fortran* to libhdf5hl_fortran in Makefile.am to match cmake install and the name pattern for other hl lib files.
Change FAIL_PUTS_ERROR to TEST_ERROR.
Cleaned up the parallel flush test and set t_pflush1 to always fail. Also set CMake to handle this.
Update calls: H5Dcreate to H5Dcreate2, H5Acreate to H5Acreate2.
Removed a comment.
Fix comment
Align H5Lcreate_ud behavior with documentation for NULL udata pointer
Update toolchain comment
Use c99 standard cmake variable
Add PGI toolchain
Correction based on code review.
HDFFV-10664 add check for state before set call
HDFFV-10546 refactor variable name
...
* commit 'af21ce90d9465e805807f17da21f93e64e03492a': (46 commits)
Changed to Unix line endings and chmod -x.
Fix runtest case for data to stdout in tool
Updated the parallel install docs.
Eliminated the need for a separate script variable.
Flipped swapped testing strings.
Specify variable type. Remove unnecessary whitespace.
Added test_vol_plugin.sh to the list of scripts to clean
Fixed a CMake build issue (CMake still doesn't run the VOL plugin tests)
Added more sub-tests to the VOL plugin test.
Added a simple test for registration of VOL connector plugins. Autotools only for right now, but this will be fleshed out in future work.
OHDR tests now accept h5_fileaccess() fapls. Formatting, informative comments, and minor renaming.
Fix some CMake listings
Add error checking to the minimized dset header size calculation. Update printf->HDprintf statements.
Remove `#if 0` block of deprecated code.
Fix mistake with H5E_BEGIN_TRY {...} H5E_END_TRY block containing ERROR-raising macros. Formatting tweaks.
Added a helpful message to the flush script.
Added a shell script so we can run the parallel flush test on OpenMPI.
Add "compact" storage test to relative header size comparisons.
Formatting adjustments.
Formatting adjustments
...
* commit 'b30a1fe44aa804a67f2291005bf8135ac5c2dc99':
Updated the parallel install docs.
Eliminated the need for a separate script variable.
Added a helpful message to the flush script.
Added a shell script so we can run the parallel flush test on OpenMPI.
