Commit Graph

14343 Commits

Author SHA1 Message Date
Mohamad Chaarawi
5362b49bec [svn-r25779] fix bug in parallel tests where a compact dset is being created
proportional to the process count without regard to the 64KB limit for
compact datasets.

tested on jam with parallel.
2014-11-04 12:52:38 -05:00
Albert Cheng
52bff896a7 [svn-r25771] Bug fix: HDFFV-8954
Previously, ph5diff may hang in a test in Linux 32 platform(HDFFV-587).
No solution was available and a patch to bypass the test is implemented.

Since the company is changing domain name soon, the patch would not be valid any more.
Tests were done (repeat 100 mpiexec -np 6 ./ph5diff -v h5diff_hyper1.h5 h5diff_hyper2.h5)
and the previous hanging problem did not occur. It is likely the newer versions of
mpich no longer have this problem.  Therefore, it is decide to remove this patch
to make the test script cleaner, if nothing else.

Tested: ran build and test in Jam (linux 32) and the repeat 100 command mentioned above.
All passed.
2014-11-03 19:37:29 -05:00
Quincey Koziol
89e2c8822d [svn-r25766] Description:
Revert r25273, 25283 & 25439 (the hyperslab improvement changes).  They
are buggy and it's taking me a long time to correct the problem.  I'll check
in a revised form of the changes when I've got them straightened out.

Tested on:
    Mac OSX 10.10.0 (amazon) w/gcc 4.9.x, C++, FORTRAN
    Linux 2.6.x (jam) w/parallel
2014-11-03 15:13:25 -05:00
HDF Tester
2fcec016a8 [svn-r25762] Snapshot version 1.9 release 202 2014-11-02 04:51:44 -05:00
Dana Robinson
d5f913731d [svn-r25756] Removed the -Wunsuffixed-float-constants warning from the gnu-flags
script. The warnings that this generates cannot easily be resolved in
platform-independent C code since gnu expects the non-standard (gnu)
'D' suffix for double constants.

It's still technically useful for catching float and long double
constants, but should probably be enabled by developers on an
as-needed basis for that purpose so the spurious warnings are
avoided.

Tested on a local linux VM with gcc 4.8.2. This is a very minor change.
2014-10-31 17:09:12 -05:00
Dana Robinson
81f7e6b1d3 [svn-r25755] Removed spurious casts in a few HDfree() statements.
Discovered when I temporarily #defined HDfree() to a more complicated
function while investigating something. 

Tested on a local linux VM. This is a very minor change.
2014-10-31 13:11:42 -05:00
Mohamad Chaarawi
6735f59f7d [svn-r25750] use MPI_File_get_size() instead of stat when retrieving the file size for the MPIO driver. 2014-10-28 11:59:36 -05:00
Allen Byrne
73465a6bc2 [svn-r25745] Testfiles for h5dump bitfields and opaques 2014-10-27 16:47:24 -05:00
Allen Byrne
573d47083b [svn-r25744] Add bitfield and opague datatype file for tests.
Tested: local linux
2014-10-27 15:50:33 -05:00
Allen Byrne
3fa8cd322f [svn-r25741] Remove obsolete comment and add test to suite. 2014-10-27 13:34:25 -05:00
Allen Byrne
429dce1736 [svn-r25740] HDFFV-8953: remove svn url references 2014-10-27 13:30:50 -05:00
HDF Tester
290dfb8799 [svn-r25736] Snapshot version 1.9 release 201 2014-10-26 06:00:38 -05:00
Albert Cheng
b6e694cb32 [svn-r25721] The return type of H5A_create was changed from hid_t to H5A_t *
but the test was not changed (still doing H5A_create(...) < 0).
Fixed the error by changing to compare against NULL.

Tested: ADA AIX machine where the old code was flagged as an error by the AIX compiler.
2014-10-19 21:39:58 -05:00
HDF Tester
2a668bd0fc [svn-r25720] Snapshot version 1.9 release 200 2014-10-19 05:31:05 -05:00
Allen Byrne
ad3e91f0c3 [svn-r25714] remove reference to deleted sub-folder 2014-10-17 10:09:52 -05:00
Scot Breitenfeld
d527a825d4 [svn-r25707] Added missing type cast for hid_t_f ids. 2014-10-15 16:29:29 -05:00
Allen Byrne
d3dbcf313f [svn-r25706] Change hdf5 config install location. 2014-10-15 11:25:05 -05:00
Larry Knox
6d82d6c7cd [svn-r25701] Add LD path to HDF5 install directory to address HDFFV-8944.
Tested with h5committest and failed external daily tests.
2014-10-13 22:14:29 -05:00
Elena Pourmal
b402201745 [svn-r25695] Maintenance: Addressing bug HDFFV-8836 - information in section 3.2 about the SZIP binaries distribution was wrong. Fixed. 2014-10-13 07:17:11 -05:00
Albert Cheng
a65212ed9f [svn-r25694] HDFFV-8932:
added Fortran interface to the default build.

Tested: jam, koala, platypus
2014-10-13 00:51:00 -05:00
HDF Tester
e8ffff6853 [svn-r25693] Snapshot version 1.9 release 199 2014-10-12 05:28:29 -05:00
Allen Byrne
6fdac87ac1 [svn-r25691] File is not generated by non-2003 compliant fortran compilers.
Tested: jam and local linux
2014-10-10 12:41:13 -05:00
Larry Knox
c7da369bfd [svn-r25690] Update RELEASE.txt for 1.8.14 release:
Reviewed and revised version information for unix daily tested machines in supported
and tested platforms sections.
2014-10-09 17:11:16 -05:00
Albert Cheng
9a074a6679 [svn-r25685] HDFFV-8932:
added C++ and High level interface to the default build.

Tested: jam, koala, platypus
2014-10-09 07:42:21 -05:00
Albert Cheng
18f671c064 [svn-r25679] Added instruction to run bin/reconfigure after changes. 2014-10-07 11:54:54 -05:00
Albert Cheng
9645159614 [svn-r25677] HDFFV-8933:
Did not provide default values for clang++ options.
Also, applied wrong values for the *_CPPFLAGS.

Solution:
Added default values for *_CXXFLAGS.
Fixed the *_CPPFLAGS values.

Tested: wren with and without --enable-production.
2014-10-07 11:35:58 -05:00
Larry Knox
ab33b7f34d [svn-r25670] Update compiler fersion information for XL compilers on ostrich.
Text only - no test.

This line, and those below, will be ignored--

M    RELEASE.txt
2014-10-06 08:27:47 -05:00
HDF Tester
e6702f2cae [svn-r25668] Snapshot version 1.9 release 198 2014-10-05 05:27:58 -05:00
Allen Byrne
6cc1d95b5f [svn-r25662] Correct packaging paths 2014-10-03 11:13:55 -05:00
Mohamad Chaarawi
ca6ffd477d [svn-r25661] Update the default setting for the memb_addr array when use passes NULL to equally divide all the address space between all the members.
Before there was one chunk of the address space not being used.

tested h5committest, and multi vfd make check on jam.
2014-10-03 10:51:50 -05:00
Mohamad Chaarawi
26400c392b [svn-r25659] fix filename generation with prefix for perf test.
tested h5commitest, jam & platypus parallel.
2014-10-02 10:56:09 -05:00
Binh-Minh Ribler
bd9c6d829a [svn-r25658] Purpose: Fixed HDFFV-8922
Description:
    Added notes regarding UTF-8 and extended ASCII, provided in HDFFV-8899,
    to C++ API.
Platforms tested:
    Linux/32 2.6 (jam) - only in comments
2014-10-02 09:59:01 -05:00
Albert Cheng
cbd0112b16 [svn-r25654] Bug fix: HDFFV-8933
Description:
Mac has changed to use the clang/clang++ compilers but compiler settings for production, debug and profile
were not setup.

Solution:
Setup default values for PROD_CFLAGS, PROD_CPPFLAGS, DEBUG_CFLAGS, DEBUG_CPPFLAGS.
PROFILE_CFLAGS and PROFILE_CPPFLAGS were set too but clang does not -pg or such for
profiling. Need to fix it later.

Tested: duck, swallow, and quail using --enable-production.
2014-10-01 23:30:53 -05:00
Mohamad Chaarawi
87bed2c752 [svn-r25651] Fix for: HDFFV-8715
HDF5_PARAPREFIX is ignored in parallel dense attribute and performance tests.

tested on Jam w/ parallel.
2014-10-01 17:02:41 -05:00
Allen Byrne
bfdf663569 [svn-r25646] Fix missing endif 2014-10-01 09:29:42 -05:00
Binh-Minh Ribler
1df7b415ab [svn-r25645] Description:
Removed the try/block with new/bad_alloc that were unintentionally
    committed previously.
Platforms tested:
    Linux/ppc64 (ostrich)
    Linux/32 2.6 (jam)
    SunOS 5.11 (emu)
2014-09-30 23:31:37 -05:00
Binh-Minh Ribler
22d0d32716 [svn-r25644] Purpose: Fixed HDFFV-8928
Description:
    Followed hints on the JIRA issue to remove several potential memory
    leaks.
Platforms tested:
    Linux/ppc64 (ostrich)
    Linux/32 2.6 (jam)
    SunOS 5.11 (emu)
2014-09-30 23:05:57 -05:00
Binh-Minh Ribler
10f1e6acf8 [svn-r25640] Purpose: Fixed HDFFV-4259
Description:
    - Used H5I_INVALID_HID instead of 0 to initialized member "id" in classes
      that represent HDF5 objects.  For PropList, H5P_DEFAULT has to be used
      instead of H5I_INVALID_HID.
    - Added try/catch block to some dynamically allocating memory code and
      re-throw the bad_alloc exception with a message informing the location of
      the failure.
Platforms tested:
    Linux/ppc64 (ostrich)
    Linux/32 2.6 (jam)
    SunOS 5.11 (emu)
2014-09-30 13:20:36 -05:00
Binh-Minh Ribler
0befe65753 [svn-r25632] Purpose: Fixed HDFFV-8852
Description:
    H5F_ACC_CREAT was included in the C++ API while the C library doesn't
    allow it yet.  Possibly, in the future, but not now.  In addition, the
    two flags H5F_ACC_RDONLY and H5F_ACC_RDWR were missing from the
    documentation, causing confusion that appending is not supported.
Solution:
    - Removed H5F_ACC_CREAT from the function until the C library support it
    - Added H5F_ACC_RDONLY and H5F_ACC_RDWR to the comments to update the
      documentation
Platforms tested:
    Linux/ppc64 (ostrich)
    Linux/32 2.6 (jam)
    SunOS 5.11 (emu)
2014-09-29 15:52:08 -05:00
Scot Breitenfeld
9140500b86 [svn-r25631] Fix fo HDFFV-8912 2014-09-29 11:23:57 -05:00
Scot Breitenfeld
17893b24ea [svn-r25629] Fix for hdffv-8855. 2014-09-29 10:31:40 -05:00
HDF Tester
c617cbdfb0 [svn-r25627] Snapshot version 1.9 release 197 2014-09-28 05:34:35 -05:00
Scot Breitenfeld
6f2f584c42 [svn-r25626] Changed the callback function integer type from INTEGER to INTEGER(C_INT) for portability, HDFFV-8909. 2014-09-26 09:25:04 -05:00
Allen Byrne
8bd91611f4 [svn-r25624] Define symbol for other compilers as nothing.
Tested: platypus
2014-09-26 09:12:55 -05:00
Allen Byrne
38ffe94174 [svn-r25623] Update from 1.8 docs - docs team changes from last release 2014-09-25 16:11:54 -05:00
Mohamad Chaarawi
a881862802 [svn-r25620] Fix a bug in multi VFD when the memb_addr in H5Pset_fapl_multi is passed
as NULL. The library is supposed in that case to equally divide the
address space among all members, but there was a bug causing an
overflow in the assignment.

tested with h5commitest
2014-09-25 14:30:36 -05:00
Scot Breitenfeld
52d5e22956 [svn-r25618] Added tests for HDFFV-8879 2014-09-25 09:48:33 -05:00
Allen Byrne
51e9f7091c [svn-r25617] Upgrade packaging process with cmake helper functions.
Tested: local linux
2014-09-25 09:37:09 -05:00
Allen Byrne
510e79af7c [svn-r25615] Include plugin header change. H5PLextern.h and H5PLprivate.h have two opposing use cases, only the enum is common.
Tested: local linux and windows
2014-09-25 08:51:40 -05:00
Scot Breitenfeld
0324181acc [svn-r25614] Fixed HDFFV-8670
*H5DSis_scale and other HL APIs do not null terminate string (and other issues)
2014-09-24 16:56:47 -05:00