* Merge examples repo into library
* Change grepTest to be more fault-tolerant
* Update examples macro file
* Exclude all Fortran examples from doxygen
* Fix issue with HDF5_VOL_ALLOW_EXTERNAL CMake variable
* Add initial API test workflow
* Initialize parallel testing with MPI_THREAD_MULTIPLE when testing API
* Add CMake variable to allow specifying a VOL connector's package name
* Remove call to MPI_Init in serial API tests
While previously necessary, it now interferes with VOL connectors that
may need to be initialized with MPI_THREAD_MULTIPLE
* Set NVHPC maximum optimization level to -O1 for now
Compiling HDF5 with NVHPC 23.5 - 23.9 results in test failures in
4 different test files that need to be resolved. Since those tests
pass with an optimization level of -O1 (and -O0) and it is currently
unclear whether the test failures are due to issues in HDF5 or issues
in the 'nvc' compiler, set the maximum optimization level for NVHPC
to -O1 until the test failures are resolved.
* Disable nvhpc Java testing in CMake and amend known issues
* Re-enable testing of Autotools nvhpc
* Update files to skip list and ignore_words_list for codespell to not
check files generated by autotools. Autotools generate misspellings
that can't be fixed in HDF5 code.
Use of an uninitialized H5L_info2_t struct caused some JNI tests to
raise asserts, causing a dialog box to be emitted, which would hang
automated tests.
Initializing the struct fixes the problem.
This change also re-enables tests in the Windows Debug GitHub actions.
Updates main CI workflow concurrency group so that the group should be a unique string formed as "workflow file-commit" or "workflow file-PR number". This should only cancel actions for a PR if the same PR is committed to while the actions are running.
* Add fetchcontent for compression libs and fix cmake config
* MSDOS is a reserved define name
* Add release note and update install doc for FetchContent
* Add CI test for FetchContent
* Use LINK_COMP_LIBS instead of STATIC_LIBRARY for depends
* Use general link
* lowercase the toolchain filenames
* Change name of option define
* Update CI with changed toolchain name
* Correct Intel compiler names
* Account for Intels name for compiler based on clang
* Make icx default and rename classic to icc
New actions added to GitHub CI to build parallel HDF5 w/ CFLAGS=-Werror. Since the GitHub runners are so underpowered, we just configure, build, and install but do not run tests. This covers Autotools only, both debug and release.
szip (or libaec) is currently not tested in CI. This adds szip to the
the Autotools GitHub CI actions on Linux when building with the
Autotools.
This PR also cleans up a few warnings that remained in the szip-
related code so the -Werror check will pass.
* Fix for Autotools --disable-deprecated-symbols
When we added v116 as a valid option, we left the default as v114 so
using --disable-deprecated-symbols leads configure to complain that you
can't set a default API that was deprecated.
The GitHub action didn't catch this because it explicitly specifies v116
This only affects develop w/ the Autotools when
--disable-deprecated-symbols is requested.
* Added v116 & default to the --with-default-api-version help string
The Autotools --with-default-api-version help string was missing v116.
This has been added, as well as a "default" target so the CI can catch
version problems when we forget to update the defaults upon creating
a new major version.
The GitHub CI also now uses "default" as the target for the deprecated
symbols build.
* Fixes the 1.14 API GitHub CI threadsafe/build_mode
This action still had the bug we fixed where we set the build mode
and threadsafety using an array of size one instead of an object.
* H5F_LIBVER_LATEST changes for move to 1.15
* Add new default api check
* Format fixes
* Fix default configure
* fix lib version tests
* Fix another version variable
* Add 1.14 doc link
* Converts the YAML build mode arrays to objects in special runs
* Adds a dump of the matrix context for each test
This would have made it a LOT easier to debug the build_mode issues...
* Disable the mirror VFD in the -Werror checks
We can re-enable this after we fix the warnings, but I don't want to
conflate code and GitHub changes, so this is a better way to get the
CI to pass for now.
* Use ubuntu-20.04 for github autotools parallel tests until parallel
configure is fixed on ubuntu 22.04.
* Remove inactive developers from CODEOWNERS.
* Temporarily cat config.log for autotools build in github actions.
* Try ubuntu-latest.
* Attempt to cat config.log even when configure fails.
* Fix syntax.
* Try again
* Try again
* Try again.
* Back to original temporary fix.
* Install libopenmpi-dev with openmpi-bin, which was installed as a
dependency prior to ubuntu-22.04.
* Removed the: file, func, line args in the _async APIs from the doxygen arguments. Documented H5ESclean.
* format fixes
* fixed DOXYGEN_PREDEFINED
* Fixed the #ifdet logic for doxygen, added missing multi-dataset va_args
* format fixes
* Use H5_DOXYGEN instead of H5_DOXYGEN_FORTRAN
* reordered multidataset declarations
* alt. for H5Aclose_async and H5Acreate_async
* made doxgyen API into seperate blocks
* updated codespell
* Committing clang-format changes
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Cleans up main GitHub workflow(s)
* Combines main.yml and pr-check.yml, which differed trivially
* Reduces config redundancy via proper use of the matrix scheme
* Adds build-only configs for:
- Version 1.6 default API
- No deprecated symbols
- Parallel HDF5
* The -Werror config was converted to build-only
* Makes the naming scheme more uniform
* Spaces out the code and adds comments
* Typo fix
* Fix mirror VFD CMake configure typo
* Debugging hack
* Undo debug hack and fix CMake build mode
* Set CC=mpicc for parallel builds
* Another attempt to fix parallel builds
* Updates comments in main.yml
* Fixes a v16 API bug in the mirror VFD test code
* Committing clang-format changes
* Added checks for v1.8 - 1.12 APIs
* Manually specify Windows configs
Java debug builds time out when running tests on Windows. We'll disable
them in debub mode while we investigate.
* Revert "Manually specify Windows configs"
This reverts commit d710d8d219.
* Skip Debug Windows configs while we investigate Java H5L timeouts
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
