Bring r16435 from revise_chunks branch back to trunk:
Expand object copy tests for chunked datasets to include 1-D datasets
with an unlimited dimension. (Fix typo in comment for test/links.c)
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
(more thoroughly tested already on revise_chunks branch)
Call h5_fixname (with an array of test filenames) for generating the
filename to create and then call h5_cleanup() when the tests pass, to delete the files
created and close the FAPL from h5_fileaccess().
Defined a macro
#define TESTING2(WHAT) {printf(" Testing %-62s",WHAT); fflush(stdout);}
Similar to TESTING, except that it has a initial indentation space.
The effect is for nested loop tests
Testing with old file format:
Testing with fill value, no compression PASSED
tested: windows, linux
Bring r16416 from revise_chunks branch to trunk:
Bring closer to standard standalone test format, add checks for using
the latest file format and close dataset ID leaked.
Tested on:
FreeBSD/32 6.3 (duty)
(too minor to require h5committest)
Description:
Attribute object copy routines have been moved from H5Oattr.c to H5Aint.c.
These routines are now shared between compact and densely stored attributes.
New routines written to support the copying of dense attributes. This patch wasmostly written by Peter Cao.
Tested: jam, smirom (h5committest)
Changed max macro in earray.c to avoid Windows conflict.
Changed if(test) to assert(test) in H5FDcore.c - H5FD_core_open()
Tested on:
Windows: XP32, XP64, Vista32, Vista64
H5committest.
Description: H5Tset_order will now properly reject H5T_ORDER_NONE for most
datatypes. Previously this could cause major problems as the file could not be
flushed.
Tested: jam, smirom (h5committest)
Description: H5Tinsert will now detect when a compound type that was previously
not packed becomes packed due to out of offset order insertion of a member.
H5Tinsert will now attempt to keep members sorted by offset order. This should
improve performance of H5Tinsert in all cases due to the fact that it no longer
needs to check every other member for overlapping, and should improve
performance of H5Tpack and possibly type conversion when compounds are packed
out of order.
Tested: jam, smirom (h5committest)
Bug Fix
Description:
Removing some unnecessary system headers from test/cache.c which snuck
their way into one of my previous check-ins ... thanks to Allen for
catching this while testing on Windows.
Tested:
Windows, Linux
Description:
If a compound type was packed except for some extra space at the end, H5Tpack
would not modify the type and the extra space would remain. Changed
H5T_is_packed to fix this behaviour.
Tested: jam, smirom (h5committest - linew down)
Bug Fix
Descriotion:
Removing problematic debugging code, and switching a leftover TRUE verbose
statement to FALSE in cache_common.c
Tested:
jam, liberty
Adding code to maintain a min_clean_fraction in the cache in serial mode.
Description:
The metadata cache now has the ability to maintain a min_clean_fraction
when in serial mode. The default initial cache size has been changed
from 1MB to 2MB, and the default min_clean_fraction has been set at 30%.
This check-in includes modifications to H5C.c to support maintaining a
min_clean_size, including the addition of clean_index_size and
dirty_index_size trackers, modifications to the H5C_make_space_in_cache
algorithm, as well as associated test code and additional statistics
tracking variables.
Maintaining the min_clean_fraction addresses the possibility of
experiencing a "metadata blizzard" when the cache gets completely
full with dirty entries. Upon having to make space, the cache would
previously need to flush every single entry in the cache before coming
across a clean entry which could be evicted. This resulted in unnecessary
flushing of oftentimes hot entries in the cache. Maintaining the
min_clean_fraction ensures that, when space is needed, clean entries
are more readily available to evict.
Tested:
jam, smirom, linew (h5committest)
Description: Added H5Pset/get_elink_cb to allow the user to specify a callback
function to be called whenever an external link is traversed. Added
H5Pset/get_elink_acc_flags to allow the user to specify the file access flags
to use to open the target file of an external link. All these properties are set on a LAPL.
Tested: jam, linew, smirom (h5committest)
new test program: It adds tests for several ranks, use of fill value or not, compression, different fill value allocation times, use of different storage layouts, and external files
tested: windows, linux
Add support for paging large data blocks to extensible arrays
Clean up allocation/destroy code for extensible array index, super and
data blocks
Add a couple of routines to set/get bit values in memory buffers
Tested on:
Mac OS X/32 10.5.5 (amazon) in debug mode
Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
Add initial support for data block 'page init' bitmasks to super
blocks.
Tested on:
Mac OS X/32 10.5.5 (amazon) in debug mode
Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
Initial changes to allow data blocks to be paged in, instead of loaded
completely.
Also, refactored test code to be smaller and more maintainable.
Tested on:
Mac OS X/32 10.5.5 (amazon) in debug mode
Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
Switch H5Gcreate -> H5Gcreate2 and H5Gopen -> H5Gopen2, so that they aren't
switched with the API compability flags are changed
Tested on:
Mac OS X/32 10.5.5 (amazon)
Linux/64 2.4 (smirom) w/API compability
Description: Fixes a problem in H5F_close_mounts where it wouldn't correctly
reshape the "child" array when unmounting files. Test added for this case.
Also fixed a potential bug in H5F_unmount where that routine reshapes the child
array.
Tested: kagiso linew smirom (h5committest)
Description: Adds 3 new public functions: H5Pset_chunk_cache,
H5Pget_chunk_cache, and H5Dget_access_list. First implementation of dataset
access properties. See RFC_chunk_cache_functions for details.
Tested: kagiso, linew, smirom (h5committest)
Add more regression tests for extensible array data structure
Tested on:
Mac OS X/32 10.5.5 (amazon) in debug mode
Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
Add random iteration to extensible array tests
Tested on:
Mac OS X/32 10.5.5 (amazon) in debug mode
Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
Minor cleanups of new testing code.
Tested on:
Mac OS X/32 10.5.5 (amazon) in debug mode
Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
