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7a9e13afdb
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643 Commits

Author SHA1 Message Date
Quincey Koziol
7a9e13afdb [svn-r30068] Description: 
Bring metadata cache corking to trunk.

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
 2016-06-13 12:49:39 -05:00
Allen Byrne
1bd3635781 [svn-r29880] Add HD to sleep function calls 2016-05-04 11:16:45 -05:00
Allen Byrne
74f3326a67 [svn-r29862] Convert source list names from *_SRCS to *_SOURCES. 
Add/convert most tools to use new HDF5_TOOLS_DIR instead of HDF5_TOOLS_SRC_DIR CMake VAR.
 2016-05-04 10:06:05 -05:00
Quincey Koziol
a816d03108 [svn-r29632] Description: 
Align w/revise_chunks branch

Tested on:
    MacOSX/64 10.11.4 (amazon) w/parallel
    (h5committest forthcoming)
 2016-04-04 23:11:54 -05:00
Quincey Koziol
9d2178ab88 [svn-r29607] Description: 
Bring "don't filter partial edge chunks" capability from revise_chunks
to trunk.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/debug, production & parallel
    (h5committest forthcoming)
 2016-04-02 04:39:32 -05:00
Dana Robinson
32f21214bb [svn-r29545] Minor normalization w/ trunk in preparation for big merge. 
Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1
           autotools serial
           autotools parallel (MPICH 3.1.4)
 2016-03-23 19:38:03 -05:00
Mohamad Chaarawi
d12a994986 [svn-r29088] - Add a test for retrieving the property values for the new coll md functions. 
- ifdef some code that don't need to be built in parallel
- more minor enhancements

tested on bb-8 with parallel and serial
 2016-02-11 11:03:44 -05:00
Mohamad Chaarawi
63c90e5c67 [svn-r29081] - merge in the phdf5_metadata_opt/ branch with the collective metadata optimizations. 
- rename H5AC_dxpl_id to H5AC_ind_read_dxpl_id and update all usage in the library

tested on bb-8 with parallel and serial.
 2016-02-10 15:48:34 -05:00
Mohamad Chaarawi
25f271d84b [svn-r29079] rename the coll read requirement function. 2016-02-10 13:19:12 -05:00
Quincey Koziol
c8a6c6030a [svn-r29077] Description: 
Normalize against the trunk, in preparation for final merge.

Tested on:
    MacOSX/64 10.11.3 (amazon) w/serial & parallel
    (h5committest not required on this branch)
 2016-02-10 12:55:55 -05:00
Mohamad Chaarawi
0461830ee3 [svn-r29059] merge from trunk. 2016-02-07 11:38:55 -05:00
Mohamad Chaarawi
48bebcc39e [svn-r29057] added dxpl type checking when debug mode is enabled (H5_DEBUG_BUILD) 
tested on bb-8 with Serial and Parallel, debug and production builds.
 2016-02-07 10:37:33 -05:00
Mohamad Chaarawi
c3f08947c1 [svn-r28959] merge from trunk. 
renaming metadata dxpl properties.
 2016-01-22 11:56:09 -05:00
Quincey Koziol
06547eb4dd [svn-r28895] Description: 
Minor code tweaks and cleanups during review.

Tested on:
    MacOSX/64 10.11.2 (amazon) w/serial & parallel
    (h5comittest not required on this branch)
 2016-01-13 23:30:50 -05:00
Mohamad Chaarawi
2824e6bef0 [svn-r28649] - add new API to toggle collective metadata write. 
- set default to FALSE
- fix some bugs.
 2015-12-14 14:53:31 -05:00
Mohamad Chaarawi
7a0cdfbbac [svn-r28636] merge from trunk. 2015-12-14 10:22:29 -05:00
Mohamad Chaarawi
3aee46a956 [svn-r28040] avoid use of MPI deprecated routines. 2015-10-12 11:53:51 -05:00
Mohamad Chaarawi
8d131aca15 [svn-r27929] merge from trunk. 2015-10-01 11:12:02 -05:00
Dana Robinson
9af344117c [svn-r27794] Reintegration merge of features/autotools_rework branch with trunk 
NOTES:

- Developers will have to run autogen.sh before building with the autotools.

- autogen.sh takes the -p option to mimic the old bin/reconfigure behavior.

- The generated error, overflow and version headers have been left in place.

- The generated H5LT parser code has also been left in place.

- There are no changes for CMake users at this time.

Tested on: h5committest
 2015-09-15 15:38:57 -05:00
Quincey Koziol
1023374492 [svn-r27768] Description: 
Complete revamp of package initialization/shutdown mechanism in the library.
Each package now has a single init/term routine.

    This new way should avoid packages being re-initialized during library
shutdown and is also be _much_ more proactive about giving feedback for
resource leaks internal to the library.

    Introduces a new "module" header file for packages in the library
(e.g src/H5Fmodule.h) which sets up some necessary package configuration macros
for the FUNC_ENTER/LEAVE macros.  (The VFL drivers have their own slightly
modified version of this header, src/H5FDdrvr_module.h)

    Also cleaned up a bunch of resources leaks all across the library and tests,
along with addressing many warnings, as I encountered them.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    Linux/64 3.10.x (kituo) w/serial & parallel
    Linux/64 2.6.x (ostrich) w/serial
 2015-09-13 22:58:59 -05:00
Quincey Koziol
26baf1a805 [svn-r27710] Description: 
Bring the "metadata rings" code from its branch (mdc_rings_v2) to the trunk.
(This change will support the page buffering feature)

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    (h5committest forthcoming)
 2015-09-09 01:33:03 -05:00
Scot Breitenfeld
e6f9fc5f7f [svn-r27625] Added preprocessor commands for PGI compiler. 
tested: h5committest
 2015-08-31 13:49:17 -05:00
Mohamad Chaarawi
0286bb12de [svn-r27576] - mark the entry as indepndent when expunged. 
- disable the metadata coll hint for smoke checks 1 & 2.
 2015-08-25 10:55:57 -05:00
Mohamad Chaarawi
071fb9393e [svn-r27558] merge from trunk. 2015-08-24 11:08:20 -05:00
Scot Breitenfeld
d06fee7bd2 [svn-r27517] Removed all perl scripts from configure. 
Tested: h5committest
 2015-08-17 16:12:03 -05:00
Dana Robinson
c27d180848 [svn-r27507] Merge of r27237-27500 from the trunk. 
Tested w/ h5committest

NOTES: - The manifest may still be messed up.
       - Cmake fails since the dual binary work needs to be merged with
         this repo's CMake externals.
 2015-08-14 14:58:54 -05:00
Scot Breitenfeld
caf0e7692a [svn-r27493] Trying again to merge the F2003_v1.10 branch to the trunk. 
Tested: h5committest --PASSED--
 2015-08-11 09:35:30 -05:00
Scot Breitenfeld
3b4696ccd1 [svn-r27489] reverted merge of branch 2015-08-10 20:22:33 -05:00
Scot Breitenfeld
a9bef45c75 [svn-r27470] svn merge -r27425:27460 https://svn.hdfgroup.uiuc.edu/hdf5/trunk 2015-08-05 16:35:30 -05:00
Allen Byrne
9e2434625d [svn-r27469] Merge from trunk with dual-binary CMake code. 
Tested: local linux with CMake
 2015-08-05 16:01:07 -05:00
Mohamad Chaarawi
54497d2b53 [svn-r27436] merge from trunk. 2015-07-27 10:39:54 -05:00
Mohamad Chaarawi
81d3377737 [svn-r27427] - free comm keyval after setting atribute on comm_self 
- free allocated buffer in t_file_image test

tested on jam with parallel.
 2015-07-23 10:03:43 -05:00
Scot Breitenfeld
985e8d02a4 [svn-r27327] svn merge -r27208:27326 https://svn.hdfgroup.uiuc.edu/hdf5/trunk 2015-07-02 14:12:03 -05:00
Quincey Koziol
ad37464819 [svn-r27296] Description: 
Correct error with braces around macro (in production builds), also clean
up a few warnings.

Tested on:
    MacOSX/64 10.10.3 (amazon) w/serial, parallel & production
    Linux/32 2.6 (jam) w/serial & parallel
 2015-06-29 15:22:30 -05:00
Quincey Koziol
8e94745298 [svn-r27293] Description: 
Split parallel metadata cache code into separate source code modules.

Tested on:
    MacOSX/64 10.10.3 (amazon) w/serial & parallel
    (too minor for h5committest)
 2015-06-27 11:45:21 -05:00
Mohamad Chaarawi
a07297e90d [svn-r27271] fix a few warnings in t_mpi.c 2015-06-23 08:54:01 -05:00
Mohamad Chaarawi
f56008e0fe [svn-r27264] some cleanups. 2015-06-22 10:54:43 -05:00
Mohamad Chaarawi
cf07aa6803 [svn-r27261] apply metadata enhancement patch that was based on the mdc 3 branch. 2015-06-21 16:45:01 -05:00
Quincey Koziol
f30ab55f41 [svn-r27237] Description: 
Merge v3 metadata cache changes to trunk.  Yay! :-)

Tested on:
    MacOSX/64 10.10.3 (amazon) w/serial & parallel
    Linux/32 2.6.x (jam) w/serial & parallel
    (daily tested on branch)
 2015-06-17 19:58:49 -05:00
Dana Robinson
fb27787c2a [svn-r27222] Merge of r27035-27221 from the trunk. 
Tested on 64-bit linux VM:
    Serial: C++ and Fortran 2003
    Parallel: Fortran
 2015-06-17 06:48:34 -05:00
Scot Breitenfeld
85bcb77904 [svn-r27221] Reworked Fortran autools REAL KIND detection. 2015-06-16 16:47:00 -05:00
Scot Breitenfeld
48086667b5 [svn-r27209] svn merge -r27186:27208 https://svn.hdfgroup.uiuc.edu/hdf5/trunk 2015-06-16 08:49:28 -05:00
Quincey Koziol
adbb64c6cd [svn-r27204] Description: 
Clean up compiler warnings before merging in v3 metadata cache changes
from branch.

Tested on:
    MacOSX/64 10.10.3 (amazon) w/serial & parallel
    Linux/32 2.6.x (jam) w/serial & parallel
 2015-06-15 11:07:38 -05:00
Scot Breitenfeld
6c4e3759f5 [svn-r27187] svn merge -r27135:27186 https://svn.hdfgroup.uiuc.edu/hdf5/trunk 2015-06-10 14:23:09 -05:00
Scot Breitenfeld
f2d14c76b8 [svn-r27186] added fix for jam with promoted reals and integers 2015-06-10 14:15:08 -05:00
Scot Breitenfeld
62401ac7c6 [svn-r27167] more DT fixes 2015-06-09 12:05:09 -05:00
Scot Breitenfeld
32703c9fc5 [svn-r27164] various bug fixes for DT 2015-06-08 16:13:15 -05:00
Mohamad Chaarawi
929e8ce128 [svn-r27162] fix for HDFFV-9412: 
- Check for mpi is_initialized and is_finalized before making MPI calls in init/terminate of HDF5.
- Add a test to make sure we can make serial HDF5 calls from rank 0 after MPI_Finalize is called.

tested with h5committest
 2015-06-08 15:52:48 -05:00
Scot Breitenfeld
8641814c4e [svn-r27154] fixed issue with mis-matching long double between Fortran and C 2015-06-05 17:17:13 -05:00
Scot Breitenfeld
043173a689 [svn-r27151] fixed __float128 errors 2015-06-04 15:26:02 -05:00