Commit Graph

1488 Commits

Author SHA1 Message Date
Elena Pourmal
79c17d54cc [svn-r13083] Description:
VMS maintenance: updated command file with the new source files;
        sohm test was failing on VMS due to upper case/lower case letters in 
        constant and variable names (i.e. FILENAME vs. filename); modified the test
        to avoid confusion.

Platforms tested:
	VMS server, kagiso
2006-12-20 16:10:06 -05:00
Quincey Koziol
de9088b6bb [svn-r13079] Description:
Add more tests for checking that writing to shared attributes works
correctly.  (Looks like it still has a bug when dense storage is used, which
I'll correct shortly).

    Add testing routine to shared message code, to retrieve reference count for
a shared message.

    Add fractal heap 'op' callback for efficiently computing the hash value of
an existing encoded message in the shared message fractal heap.

    Various minor cleanups and warning placations.

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-12-19 15:18:26 -05:00
Quincey Koziol
43ec5b7ef4 [svn-r13074] Description:
Add support for opening attributes in dense and/or shared storage by
index.

    Move routines for building and operating on tables of attributes into
separate source module.

    Fix bug where reverting from "dense" to "compact" storage would 'unshare'
attributes.

    Minor code cleanups, etc.

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-12-18 20:59:28 -05:00
Quincey Koziol
5865018c85 [svn-r13073] Description:
Verify H5Aget_num_attrs() works correctly for new object header format.

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-12-18 16:25:05 -05:00
Quincey Koziol
9769d008b0 [svn-r13072] Description:
Push support for shared attributes into more dark corners of the "dense"
attribute storage support.

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-12-18 16:06:44 -05:00
Quincey Koziol
ddbc06fce6 [svn-r13067] Description:
Add [quite] limited ability to update (ie. write) data for objects in
fractal heap.  Limited to just updating objects in managed heap blocks (i.e.
not 'tiny' or 'huge' objects) and must be updated with data of the same length
as the object in the heap.  Updating objects in compressed heaps does work
though [as long as the data isn't 'tiny' or 'huge'].
    Needed for changing the data value or the name of an attribute that is
stored in dense or shared storage.

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-12-18 12:52:43 -05:00
James Laird
9236c9a148 [svn-r13065] Added support for copying shared messages (including turning unshared
messages to shared messages and vice versa).

Extended objcopy test to test all "permutations" of shared/unshared and
new/old group format.  If this proves to take a long time to test, I'll
go back and have it run fewer tests when HDF5_TEST_EXPRESS is enabled. 

Tested on smirom, kagiso, copper, and Windows.
2006-12-15 16:28:17 -05:00
Albert Cheng
481cfbe0e9 [svn-r13062]
Bug fix.

Description:
Test failed when core and multi VFD is used.

SOlution:
Failure was because the test file was created with the specified VFD access
property but later reopened by default access. That won't work for VFDs such
as multi that produced files that are incompatible with the default sec2
file driver.

Fixed it by using the same VFD access property when it reopens the same test
file.

However, it still fails for the core VFD which does not create any real file.
It is meaningless to try to reopen its file.  Fixed it by adding core to
the incompatible list of VFDs so that it would skip the test.

Split is already coded as incompatible VFD but I don't understand why
it is incompatible in this case. Removed it from the incompatible list.

Tested Platforms:
Copper in which the daily test failed.
2006-12-14 09:34:39 -05:00
Quincey Koziol
9c167bcfa7 [svn-r13048] Description:
Set up tests for next phase of testing dense attribute operations, with
shared attributes.

    Other minor code cleanups...

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-12-11 21:10:05 -05:00
Quincey Koziol
2f665b89ce [svn-r13047] Description:
Add "attribute exists" internal routine to make verifying that an attribute
with the same name doesn't already exist easier.

    Tweak "trace" script to produce more whitespace in H5TRACE macros, in order
to make them easier to read.

    Minor other whitespace cleanups

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-12-11 20:49:59 -05:00
Quincey Koziol
a867b8f5fd [svn-r13045] Description:
Switch from using H5L_index_t/H5L_INDEX_<foo> to H5_index_t/H5_INDEX_<foo>
in order to accommodate indices on aspects of attributes as well as links.

    Add basic support for deleting attributes in dense storage (needs more
support/tests for shared attributes in dense storage still).

    Misc. cleanups, etc.

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-12-11 19:42:19 -05:00
Quincey Koziol
dc73eca159 [svn-r13041] Description:
Migrate "internalish" attribute operations into new source code file.

    Add test & basic support for opening attributes in dense storage (shared
attributes not tested or supported yet).

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-12-11 14:02:38 -05:00
Quincey Koziol
978c9c9d93 [svn-r13034] Description:
Take out separate memory type in the file for SOHM objects and create
aliases for existing memory types for SOHM use.

Tested on:
    FreeBSD/32 4.11 (sleipnir)
2006-12-08 14:44:20 -05:00
Quincey Koziol
7b368f006e [svn-r13028] Description:
Add first pass of "dense" attribute storage to objects.  Lots of parts of
this are stubbed out, but all the tests are passing and I'll work on the corner
cases soon.

    Eliminated several unused parameters from object header message callback
routines.

    Other, miscellaneous code cleanups, etc. (and probably some things I've
forgotten about... :-)

Tested on:
    FreeBSD/32 4.11 (sleipnir)
    Linux/32 2.4 (heping)
    AIX/32 5.? (copper)
2006-12-06 17:19:52 -05:00
Quincey Koziol
06ba931a95 [svn-r13016] Description:
Finish moving object header message routines into their own source code
module, along with renaming them to have "H5O_msg_" prefix...

Tested on:
    Mac OS X/32 10.4.8 (amazon)
    FreeBSD/32 4.11 (sleipnir)
    Linux/32 2.4 (heping)
    AIX/32 5.? (copper)
2006-12-04 09:34:10 -05:00
Quincey Koziol
304accfb96 [svn-r13015] Description:
Migrate more object header routines to use the H5O_msg_ prefix and put
them into the src/H5Omessage.c code module.

Tested on:
    Mac OS X/32 10.4.8 (amazon)
    FreeBSD/32 4.11 (sleipnir)
    Linux/32 2.4 (heping)
    AIX/32 5.? (copper)
2006-12-04 06:25:01 -05:00
James Laird
786af4b8d7 [svn-r13013] Cleaned up some mismatched types in test/tsohm.c that were causing
errors on tg-login3.

Tested on tg-login3.
2006-12-03 10:57:43 -05:00
Quincey Koziol
9f39e59d91 [svn-r13012] Description:
Refactor object header code to separate process of creating an object
header message from the process of writing to an existing one.

    Start renaming operations that deal with object header messages to have
"H5O_msg_" prefix...

Tested on:
    Mac OS X/32 10.4.8 (amazon)
    FreeBSD/32 4.11 (sleipnir)
    Linux/32 2.4 (heping)
    AIX/32 5.? (copper)
2006-12-03 10:29:41 -05:00
James Laird
772730f4d7 [svn-r13004] Much improved shared object header message test, along with some bug fixes
to make the test pass.

These changes involve changes to the file format of SOHMs, but that's okay
because nobody should have been using SOHMs yet anyway.

Tested on Windows, kagiso, copper, and heping
2006-12-01 10:51:42 -05:00
Quincey Koziol
27c0fb2220 [svn-r13002] Description:
Fix problem with copying objects when the dataset to copy has an "older"
version of the layout message and needs to compute the size of the dataset's
storage after the dataspace information is available.

    Minor random cleanups also...

Tested on:
    FreeBSD/32 4.11 (sleipnir)
    Too minor/weird to test w/h5committest...
2006-11-30 16:38:30 -05:00
Raymond Lu
ce7f9328b6 [svn-r13001] Enabled CORE file driver to read or write an existing file depending
the setting of backing store through H5Pset_core_fapl and file open
flag.  Added test cases in vfd.c.
2006-11-30 15:49:01 -05:00
Quincey Koziol
ce05f32a3d [svn-r12995] Description:
Make the memory size of the max. compact & min. dense attribute storage
variables align with the property list size, instead of the size on disk, to
better handle big-endian machines.

Tested on:
    FreeBSD/32 4.11 (sleipnir)
    Linux/32 2.4 (heping)
    Linux/64 2.4 (mir)
    AIX/32 5.? (copper)
2006-11-28 23:44:28 -05:00
Quincey Koziol
2f3344a049 [svn-r12994] Description:
Propagate object creation properties up into group, dataset and named
datatype property lists, when those property lists are retrieved for
existing objects in a file.

    Also, add H5Tget_create_plist() API routine, to allow named datatype
property lists to be retrieved for named datatypes.

Tested on:
    FreeBSD/32 4.11 (sleipnir)
    Linux/32 2.4 (heping)
    Linux/64 2.4 (mir)
    AIX/32 5.? (copper)
2006-11-28 23:13:02 -05:00
Quincey Koziol
1b03a4cc34 [svn-r12992] Description:
Add fields for tracking attributes on objects to object header prefix,
when using the latest version of the format.

    Reduce size used to store type of header message from 2 bytes to 1. (If we
have >256 message types, we probably have a different problem... :-)

    Also, add "birth" time for object (i.e. creation time) [named to align
with similar fields in file systems]

    Correct bug in H5Gget_objinfo() - retrieve the ctime field from object info,
instead of the mtime field.

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-11-28 15:29:28 -05:00
Quincey Koziol
1687720a5f [svn-r12991] Description:
Reduce the size of some of the group information to more reasonable bounds.
(16-bit values instead of 32-bit values).

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-11-28 13:51:23 -05:00
Quincey Koziol
0bd83631d5 [svn-r12990] Description:
When using the latest version of the file format, move the "modification
time" information into the object header prefix, which is more efficient.
Also add "access time" and "change time" (for metadata) fields, all of which
take about the same space as the previous modification time header message.

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-11-28 12:43:54 -05:00
Quincey Koziol
4ef5853e2d [svn-r12989] Description:
Remove incorrect sanity check & add test case that triggered it.

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-11-28 10:25:59 -05:00
Quincey Koziol
2516911cad [svn-r12988] Description:
General cleanups, in preparation for adding some attribute-tracking fields
to the object header prefix.

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-11-27 18:10:02 -05:00
Quincey Koziol
957a5082d1 [svn-r12983] Description:
Merge H5Pget/set_create_tracking / H5Pget/set_create_index routines into
H5Pget/set_creation_order.

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-11-27 14:17:07 -05:00
Quincey Koziol
d219ff86a8 [svn-r12977] Description:
Added H5Gget_info[_by_idx] routines and deprecated H5Gget_num_objs routine.

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-11-27 13:00:08 -05:00
Quincey Koziol
59208d8a9b [svn-r12976] Description:
Add # of attributes to the object info struct and deprecate
H5Aget_num_attrs().

Tested on:
    FreeBSd/32 4.11 (sleipnir)
    Linux/32 2.4 (heping)
    Linux/64 2.4 (mir)
    AIX/32 5.? (copper)
2006-11-27 09:51:22 -05:00
Quincey Koziol
e32aacbfed [svn-r12974] Description:
Add H5Oget_info() and H5Oget_info_by_idx() API routines & tests

Tested on:
    FreeBSD/32 4.11 (sleipnir)
    Linux/32 2.4 (heping)
    Linux/64 2.4 (mir)
    Mac OS X/32 10.4.8 (amazon)
    AIX/32 5.? (copper)
2006-11-27 00:31:54 -05:00
Quincey Koziol
5c1fedcb90 [svn-r12973] Description:
Finish removing library's internal code that uses H5G_get_objinfo() and
retarget it at either getting the link information or the object information,
as appropriate.  (Still need to add user-level tests for H5Oget_info(), but
since several internal components of the library depend on the internal version,
it appears to be working correctly).

Tested on:
    FreeBSD/32 4.11 (sleipnir)
    Linux/322.4 (heping)
    Linux/64 2.4 (mir)
    AIX/32 5.? (copper)
    Mac OS X/32 10.4.8 (amazon)
2006-11-24 23:10:32 -05:00
Albert Cheng
e75b0a6031 [svn-r12965] Removed the warning message of extend_file not having protocol by making it
static.

Test: Heping.
2006-11-21 18:07:57 -05:00
Quincey Koziol
4d08b756b2 [svn-r12956] Description:
Add tests for H5Oopen_by_idx() (in a rare fit of superlative coding I
apparently got the implementation complete correct in my earlier checkin :-)

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-11-21 10:39:16 -05:00
Quincey Koziol
335978f235 [svn-r12952] Description:
Add tests for H5Literate(), in all combinations.

    Sweep up a few minor issues with H5Literate() that the tests exposed.

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-11-20 16:01:28 -05:00
James Laird
8d9964cf02 [svn-r12951] Fixed error on copper in 64-bit. Was using size_t when I should have been
using unsigned.

Tested on copper; minor change.  Currently testing on juniper.
2006-11-20 11:12:45 -05:00
Quincey Koziol
98f3bca75e [svn-r12949] Description:
Finish implementation of H5Literate() [still needs real tests]

    Clean up datatype macro warnings a bit more.

    Unify iterator callback macros and put up in public header file, with the
iterator directions.

Tested on:
    Mac OS X/32 10.4.8 (amazon)
    FreeBSD/32 4.11 (sleipnir)
    Linux/32 2.4 (heping)
    Linux/64 2.4 (mir)
    AIX/32 5.? (copper)
2006-11-20 10:23:29 -05:00
Quincey Koziol
7972dfc940 [svn-r12942] Description:
Fix H5Rget_name() routine with dataset region references and merge tests
into getname test.

Tested on:
    FreeBSD/32 4.11 (sleipnir)
    Linux/32 2.4 (heping)
    Linux/64 2.4 (mir)
    AIX/32 5.? (copper)
2006-11-18 08:52:32 -05:00
Quincey Koziol
92a2d15859 [svn-r12941] Description:
Clean up warnings assigned to me from today's meeting - still need
to tackle the datatype conversion ones...

Tested on:
    FreeBSD/32 4.11 (sleipnir)
    Linux/32 2.4 (heping)
    Linux/64 2.4 (mir)
2006-11-17 17:09:43 -05:00
Quincey Koziol
b2acbc56c6 [svn-r12938] Description:
Add src/H5Oalloc.c file forgotten in previous object header checkin

    Break out more object header routines into separate file (debugging routines
this time).

    Fix "//" style comment in recent ISOHM source changes.

    Fix 'size_t' vs. 'unsigned' problem (visible in 64-bit testing) in recent
ISOHM test changes.

Tested on:
    FreeBSD/32 4.11 (sleipnir)
    Linux/32 2.4 (heping)
    Linux/64 2.4 (mir)
2006-11-17 15:12:28 -05:00
James Laird
e215d22a79 [svn-r12935] Added list-to-btree conversion, changed SOHM apis, and pushed SOHM table
version and size information into the superblock to eliminate a read when
loading it.

This is a file format change, and hopefully the last one (knock on wood).

Tested on kagiso and Windows (mostly just a SOHM change).
2006-11-17 14:39:14 -05:00
Elena Pourmal
5660250f25 [svn-r12934] Description:
Added return value to the main function to fix daily tests problem on sol
	that I cannot reproduce.
Platforms tested:
	sol, heping
2006-11-17 14:11:54 -05:00
Quincey Koziol
1482d3e9cb [svn-r12932] Description:
Basic support for H5Literate() routine.  Still needs to be fleshed out and
refactored to simplify.  Also, needs tests. :-)

Tested on:
    FreeBSD/32 4.11 (sleipnir)
    Linux/32 2.4 (heping)
    Linux/64 2.4 (mir)
    AIX/32 5.? (copper)
    Mac OS X/32 10.4.8 (amazon)
2006-11-17 10:48:41 -05:00
Elena Pourmal
7cc88ba656 [svn-r12930] Description:
Added new refreg_name.c file to test H5Rget_name and H5Iget_name for region references.
	H5Rget_name tests are skipped for now since they do not work (at least for me :-)

Platforms tested:
	heping and copper
2006-11-16 18:28:13 -05:00
James Laird
6b5a918b1e [svn-r12929] Hopefully this really is a fix for the tg-login errors.
The version of libtool used by HDF5 isn't directly affected by the reconfigure
script; instead, libtoolize --force must be used by hand.  Libtool was the
source of the problem, so rolling its version back to 1.5.14 should solve the
issue (at least temporarily).

Reconfigure should still work on both heping and kagiso.

Tested on heping, kagiso, and tg-login3.
2006-11-16 15:44:35 -05:00
Quincey Koziol
fb4f4a22f7 [svn-r12922] Description:
Add support for "delete by index" to "old-style" groups, finishing
implmentation of H5Ldelete_by_idx() routine.

Tested on:
    FreeBSD/32 4.11 (sleipnir)
    Linux/32 2.4 (heping)
    Linux/64 2.4 (mir)
    Aix/32 5.? (copper)
2006-11-15 23:29:18 -05:00
Quincey Koziol
ab9425d057 [svn-r12921] Description:
Finish adding more tests to "delete by index" for compact/dense groups.

Tested on:
    Mac OS X/32 10.4.8 (amazon)
    FreeBSD/32 4.11 (sleipnir)
2006-11-15 22:14:58 -05:00
Quincey Koziol
51580d9be1 [svn-r12919] Description:
More progress toward getting H5Ldelete_by_idx() working - removals on
densely stored links should work now (still needs some more tests).  Still
need to write code for removals on "old-style" groups.

Tested on:
    FreeBSD/32 4.11 (sleipnir)
2006-11-15 17:08:08 -05:00
Quincey Koziol
a44ab9133a [svn-r12915] Description:
Finish adding "delete by index" feature to v2 B-trees.

Tested on:
    FreeBSD/32 4.11 (sleipnir)
    Linux/32 2.4 (heping)
    Linux/64 2.4 (mir)
    AIX/32 5.? (copper)
2006-11-15 12:38:45 -05:00