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1653 Commits

Author SHA1 Message Date
M. Scot Breitenfeld
893641990a move the vol_info to an optional parameter 2019-06-11 14:28:10 -05:00
Larry Knox
54a07f556c Add options to enable or disable building tools and tests. The default 
is enabled for each.
 2019-06-05 23:20:01 -05:00
M. Scot Breitenfeld
2c79243111 added H5Pset_vol 2019-05-22 14:09:17 -05:00
M. Scot Breitenfeld
4673a34825 added vol connector 2019-05-16 16:22:05 -05:00
M. Scot Breitenfeld
5e3dfa8bbe added test for vol_connector 2019-05-16 15:33:16 -05:00
M. Scot Breitenfeld
1f505e5ab2 removed H5VL constants 2019-05-16 15:20:32 -05:00
M. Scot Breitenfeld
32c4900e89 removed VOLL NULL connector and replaced it with native VOL 2019-05-16 15:05:12 -05:00
M. Scot Breitenfeld
1d6641ee3a added connector_name test 2019-04-24 15:17:10 -05:00
M. Scot Breitenfeld
fc769f425f added missing files 2019-04-24 13:59:26 -05:00
M. Scot Breitenfeld
7dd53873f7 Merge branch 'develop' into H10621 2019-04-24 12:57:30 -05:00
Allen Byrne
4c9efd70b0 Fix fortran omission 2019-04-15 14:27:02 -05:00
Quincey Koziol
d7e1464058 Add C++, Java, and FORTRAN wrappers and tests for H5Fget_fileno 2019-04-13 22:58:16 -05:00
Vailin Choi
2886cd9e45 HDFFV-10365: Changes as described in the RFC: H5Sencode/H5Sdecode Format Change. 
This also addresses HDFFV-10255: H5Sencode/decode performance issue.
 2019-04-06 16:55:14 -05:00
M. Scot Breitenfeld
7c927a3590 added more tests 2019-03-11 11:32:49 -05:00
Quincey Koziol
deeb302747 Specify the default VOL connector to use with an environment variable. 
This implicitly adds support for changing the VOL connector for command-line
tools or any application linked with the library.

Also, add 'make check-vol' support for all directories, clearing up necessary
issues in testing scripts, etc.
 2019-03-09 21:41:38 -06:00
M. Scot Breitenfeld
07fde1e25c Merge branch 'develop' into H10621 2019-03-07 14:47:38 -06:00
Allen Byrne
67bc117efe Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop) 
* commit '5ad3891d9b861593ebe25d540bed2d913eb83aba':
  Remove ' ' (typo).
  Code improvement
  Removed an extra "using" statement
  Adding documentation
  More changes to align with incoming selection improvements.
  Added C++ wrapper for H5Ovisit2
  Adding a C++ wrapper
 2019-02-17 09:42:00 -06:00
Allen Byrne
122b63a5a2 HDFFV-10703 Update CMake commands to latest standard 2019-02-15 15:48:24 -06:00
Quincey Koziol
320eaf91b9 More changes to align with incoming selection improvements. 2019-02-14 16:20:32 -06:00
Allen Byrne
6f71b2cdcf Refactor mpi test names 2019-02-11 12:42:46 -06:00
Allen Byrne
d98faf5703 Rename parallel tests to start with PAR_ 2019-02-11 11:09:43 -06:00
Allen Byrne
e73197077b Remove F2003 Option and references 2019-02-06 10:10:46 -06:00
Dana Robinson
8522539a9e Fix for Fortran failures. 2019-01-10 19:43:17 -06:00
M. Scot Breitenfeld
b3743a4423 fixed 8 byte integer issue 2019-01-09 11:21:56 -06:00
M. Scot Breitenfeld
51d911a7f8 fix for xlf compiler 2019-01-09 10:40:18 -06:00
Scot Breitenfeld
4f9ecd71e5 replaced uint 2019-01-08 22:54:19 -06:00
Scot Breitenfeld
9b6fe52bcf Merge pull request #1409 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:J10443 to develop 
* commit 'b4d4d371a03158c39f120b1bde6c4bd51f1b2eb6':
  HDFFV-10443: Add "field" parameter to H5Oinfo* and H5Ovisit* APIs.
  Added chunked dataset, H5S_ALL test
  typo
  typo
  updated defined constants
  Documented HDFFV-10652
  HDFFV-10652 Implemented a process-0 read and then broadcast for collective read of full datasets (H5S_ALL) by all the processes in the file communicator.
  Removed reason for breaking read-proc0-and-bcast
  switched to using CX instead of a global var.
  HDFFV-10652 Implemented a process-0 read and then broadcast for collective read of full datasets (H5S_ALL) by all the processes in the file communicator.
 2019-01-08 11:29:48 -06:00
Scot Breitenfeld
b4d4d371a0 HDFFV-10443: Add "field" parameter to H5Oinfo* and H5Ovisit* APIs. 2019-01-08 11:24:00 -06:00
Dana Robinson
905766fa3e Fortran wrappers for dataset obj header minimization API calls. 2019-01-08 07:34:58 -08:00
Scot Breitenfeld
a21f1d8aef added missing files 2018-12-07 15:25:34 -06:00
Scot Breitenfeld
96b6f58ac8 Implemented VOL APIs and C constants, no tests 2018-12-07 12:06:29 -06:00
Scot Breitenfeld
5267454ebd Implemented VOL APIs and C constants, no tests 2018-12-07 12:00:47 -06:00
Scot Breitenfeld
1000e97d3a initial API impl. 2018-12-06 23:44:18 -06:00
M. Scot Breitenfeld
9bbaca66ca fixed sp. 2018-11-09 11:29:24 -06:00
M. Scot Breitenfeld
4fbd6bb8a5 HDFFV-10511 -- Make fortran specific subroutines names PRIVATE 
Made non-public APIs private.
 2018-11-09 11:24:42 -06:00
Allen Byrne
d69b541c20 TRILABS-34 add batch option. Also fix cmakedefine01 usage 2018-10-11 11:31:09 -05:00
Dana Robinson
e962df1591 VOL FEATURE 2018-10-10 08:10:15 -07:00
Allen Byrne
1cac34fc5b Fix defines for XL compiler 2018-10-03 16:39:50 -05:00
Dana Robinson
eb78fd8832 Develop normalization with vol_integration. 
Mostly peripheral things like the tools and wrappers,
with just enough core library code to support that.
 2018-09-18 22:57:37 -07:00
Larry Knox
d20fd310e4 Change prefix in example scripts to relative path to bin. This was done 
for 1.8, and works wherever installed without the need to replace the
original prefix.
 2018-08-23 07:37:00 -05:00
M. Scot Breitenfeld
fe325fb554 HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly 
misc. clean-up
 2018-06-08 14:45:23 -05:00
M. Scot Breitenfeld
e6aa306354 HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly 
added dependency on H5ff.F90 for H5_ff.F90
 2018-06-08 14:38:22 -05:00
M. Scot Breitenfeld
c52d04320b HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly 
h5fget_obj_count_f with H5F_OBJ_ALL_F counted objects created in h5open_f, which should not be included in the count. The function now returns the correct number of objects (i.e., objects created in h5open are not included in the total).
 2018-06-08 14:19:11 -05:00
Allen Byrne
df64de9eed Add fortran MPI to test and example 2018-06-06 13:44:56 -05:00
Allen Byrne
81300213e7 Add mpi include folders for fortran C objects 2018-06-06 11:16:02 -05:00
Vailin Choi
7a5fa418e3 Fix the error found after earlier checkin. 2018-05-31 19:05:58 -05:00
Vailin Choi
18fe60ae10 (1) Made the change according to the pull request feedback. 
(2) Removed the performance test form test/th5o.c: will decide on what needs to be done to show speedup via HDFFV-10463.
 2018-05-31 11:45:20 -05:00
Vailin Choi
584a810764 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop) 
* commit 'd184e6db94163dcc8761182744a6c524a4850887':
  Removed unused H5MF functions and updated FUNC_ENTER macros and naming in H5MFsection.c.
  Correct script names
  Fix typo
  Minor H5FS tweaks.
  Put back CTRL-L chars
  Update support link
  Update text
  Valgrind fixed by checking for prefix_len of 0
 2018-05-30 14:48:19 -05:00
Allen Byrne
2be5b1abd4 Fix typo 2018-05-24 09:22:19 -05:00
Vailin Choi
be2fc7dcd1 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop) 
* commit '2b0fb7e3f1f7da5b23d430702493ed4fb7f87166': (21 commits)
  HDFFV-9739 only executes H5E tests in production
  Remove link flag from compile command
  fix typo
  Add release note
  Correct attribute location
  HDFFV-9739 fix  copy testfiles command
  HDFFV-9739 remove obsolete test files
  HDFFV-9739 dup test file for concurrent tests
  HDFFV-9739 Fix autotools script
  HDFFV-9739 Change autotools test scripts
  Fix typo
  HDFFV-9739 Update test reference
  Update current windows test machines
  HDFFV-9739 Grab err number before API call
  HDFFV-9739 Add release note
  Adjust test names for concurrent tests
  Fix soversion
  HDFFV-9739 Fix copy name
  HDFFV-9739 factor out tests into separate JUnit
  Updated the threadsafety test to use error macros instead of asserts.
  ...
 2018-05-23 14:27:05 -05:00
Allen Byrne
7c4598cf74 Remove link flag from compile command 2018-05-22 15:48:34 -05:00
Vailin Choi
b178d80be0 Changes made based on feedback from pull request #1039. 2018-05-14 12:26:48 -05:00
Vailin Choi
ea66ac1e67 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop) 
* commit 'dcc66a4f157ace0858b788228550f3e104df3242': (35 commits)
  GGC requires attribute before function
  Correct COMPILE defs usage
  Add missing module_dir property
  Text cleanup
  Correct sentence punctuation.
  Add release note.
  Use set_property for MT flag
  Correct command usage
  Remove APPEND
  Fix typo
  Add missing test lib
  add missing folder to path
  Fix another command revert
  Missed a command revert
  Revert to old style for LINK_FLAGS gen expr not working
  LINK_FLAGS must be separate property sets
  Fix link flags syntax
  Revert refactor link flags
  refactor link flags to interface
  Refactor link flags
  ...
 2018-05-14 11:20:03 -05:00
Allen Byrne
4069936ee4 Add missing module_dir property 2018-05-09 08:44:45 -05:00
Allen Byrne
4c4042121c Use set_property for MT flag 2018-05-07 17:23:25 -05:00
Allen Byrne
424e2275bc Correct command usage 2018-05-07 16:08:42 -05:00
Allen Byrne
6fcf4c9aeb Remove APPEND 2018-05-03 15:41:50 -05:00
Allen Byrne
ab971fafdd Fix another command revert 2018-05-03 12:10:13 -05:00
Allen Byrne
866337babe Missed a command revert 2018-05-03 12:03:46 -05:00
Allen Byrne
1d1333ed6b Revert to old style for LINK_FLAGS gen expr not working 2018-05-03 11:57:30 -05:00
Allen Byrne
01a77cbfb1 LINK_FLAGS must be separate property sets 2018-05-03 10:44:57 -05:00
Allen Byrne
1ab0814a43 Fix link flags syntax 2018-05-03 09:28:54 -05:00
Allen Byrne
b73c0d2ab8 Revert refactor link flags 2018-05-02 16:33:35 -05:00
Allen Byrne
d906f2dcc5 refactor link flags to interface 2018-05-02 15:42:38 -05:00
Allen Byrne
d3a49988eb Refactor link flags 2018-05-02 15:15:13 -05:00
Allen Byrne
0c77fbaeb9 Fix defs and additional MSVC items 2018-05-02 13:52:02 -05:00
Allen Byrne
c6827191f9 TRILABS-19 fix syntax for windows 2018-05-02 12:19:30 -05:00
Allen Byrne
6dd91d206f TRILABS-19 Link flags need - character 2018-05-02 10:04:14 -05:00
Allen Byrne
6fb94eb3a3 TRILABS-19 fix fortran link flags 2018-04-30 09:56:27 -05:00
Allen Byrne
76d0cc0ca9 TRILABS-19 Refactor fortran properties 2018-04-30 09:03:29 -05:00
Allen Byrne
120195e5aa TRILABS-19 fix typos 2018-04-27 12:44:42 -05:00
Allen Byrne
2347bffaa2 TRILABS-19 remove add_defintions and use generator expressions 2018-04-26 16:41:04 -05:00
Allen Byrne
bc9a773b99 TRILABS-20 Fix fortran configure during fix of CXX configure 2018-04-24 17:22:55 -05:00
Vailin Choi
e6bc326ec0 Fix for HDFFV-10180 Performance issues with H5Oget_info. 2018-04-24 15:10:13 -05:00
Allen Byrne
6c82c49dd5 TRILABS-20 set a compiler name on all project commands 2018-04-20 10:11:55 -05:00
Allen Byrne
03e579f201 TRILABS-19 All c code INCLUDE_DIRECTORIES converted 2018-04-17 22:29:57 -05:00
Allen Byrne
46f2a2a432 TRILABS-19 Initial conversion of include_directories to targets 2018-04-17 15:57:58 -05:00
Allen Byrne
9cd4e23ce7 Merge pull request #1024 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop 
* commit '34e3e3ef17f29b721780941866a3ad4c261b7c05':
  Whitespace changes
  Whitespace and test reclassify
  Move two more functions from unit tests
  Reorder of tests for debug APIs option
  HDFFV-10444 fix soversion numbers for libraries
  Fix Java test for DEBUG_APIS
  Use var instead of absolute number
 2018-04-11 15:09:32 -05:00
M. Scot Breitenfeld
05ef85b02d fixed return integer type of C function 2018-04-10 10:54:31 -05:00
Allen Byrne
db3d744f25 HDFFV-10444 fix soversion numbers for libraries 2018-04-10 08:55:17 -05:00
Quincey Koziol
dae5e63cfb Revert some tangential code cleanups. 2018-03-23 12:43:57 -05:00
Quincey Koziol
f38864920d Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into merge_func_enter_vol 
Plus initial steps toward merging API context push into FUNC_ENTER_API* macros
 2018-03-18 18:36:49 -05:00
Quincey Koziol
4a17aff408 Add API context interface and use it throughout the library. 2018-03-15 16:54:30 -05:00
Allen Byrne
1651db0608 HDFFV-10418 adjust build commands to match main library build 2018-03-12 10:59:07 -05:00
Allen Byrne
24c62ba7fe Change CMake min to 3.10 2018-03-09 12:32:06 -06:00
Allen Byrne
b36bad53d9 Inc CMake min, Add new tests, rework test CMake files 2018-02-27 12:57:07 -06:00
Allen Byrne
d08f56e027 HDFFV-10345 whitespace corrections 2018-02-05 12:47:31 -06:00
Allen Byrne
f325002db9 HDFFV-10345 spelling errors 2018-02-05 12:38:20 -06:00
Allen Byrne
0866bc0bb8 HDFFV-10398 use the target name for custom commands 2018-01-30 12:29:51 -06:00
Allen Byrne
2f18da435e HDFFV-10398 use the simpler add_subdirectory signature 2018-01-30 12:21:01 -06:00
Allen Byrne
608a71200d HDFFV-10385 rename vars and macros 2018-01-19 10:49:17 -06:00
Allen Byrne
6ca95c512a HDFFV-10385 rework java names 2018-01-17 10:27:00 -06:00
Allen Byrne
a2f2e1f4cf Fix fortran cmake variable usage 2018-01-11 10:48:14 -06:00
Allen Byrne
c7e8a0788c Correct whitespace 2018-01-10 14:36:25 -06:00
Allen Byrne
9956b151e0 HDFFV-10385 multi-config builders need folder set 2018-01-10 14:35:00 -06:00
Allen Byrne
681047269b HDFFV-10385 fix packaging 2018-01-10 13:31:47 -06:00
Allen Byrne
82709178aa HDFFV-10385 includes cleanup 2018-01-10 09:52:06 -06:00
Allen Byrne
6bf125c7b3 HDFFV-10385 fix fortran references 2018-01-10 08:31:44 -06:00
Allen Byrne
16e0a6b858 Correct folder typo 2018-01-09 16:55:29 -06:00
Allen Byrne
3e0c6530dc HDFFV-10385 fix platform errors 2018-01-09 16:26:12 -06:00