Commit Graph

1653 Commits

Author SHA1 Message Date
Dana Robinson
a92c735c9b Squashed commit of the token_refactoring branch: 2020-01-16 13:29:34 -08:00
Allen Byrne
7022a3380c HDFFV-11001 need to qualify all by parallel or serial types 2020-01-15 12:28:53 -06:00
Allen Byrne
a0ae5e9b89 HDFFV-11001 Add fine control over testing 2020-01-15 11:38:06 -06:00
Quincey Koziol
0225e6d596 Small changes from the token_refactoring branch, to reduce the delta to develop 2020-01-03 22:16:38 -06:00
David Young
f1b39ad80e Apparently, + has no special meaning, and neither does \+, in so-called
"obsolete" / POSIX "basic" regular expressions.  Also, not every version of
`sed` out there supports the `-E` option.  So delete the -E flag and use
the regex `[^/][^/]*` instead of `[^/]+`.

Add config/netbsd to the MANIFEST.
2019-11-12 10:43:26 -06:00
David Young
2dd5bbfe16 Merge pull request #1984 in HDFFV/hdf5 from ~DYOUNG/netbsd:develop to develop
* commit '0b721858e46a317c370a24115032d5be41688f67':
  Make these scripts relocatable again: derive a relative path for the original installation prefix from the examples prefix.  Use that relative path to locate the current installation prefix, always.  Fall back to an absolute installation prefix if the relative path cannot be derived.
  Get the path to prefix right: needs a ../ to back out of subdirectory c/.
  Make this script relocatable again: derive a relative path for the original installation prefix from the examples prefix.  Use that relative path to locate the current installation prefix, always.  Fall back to an absolute installation prefix if the relative path cannot be derived.
  Let us override the examples directory using --with-examplesdir=DIR. This is handy for NetBSD where HDF5 examples are installed by convention in $prefix/share/examples/hdf5/ rather than in ${prefix}/share/hdf5_examples/, which is the HDF5 default.
  Follow longstanding execv convention for compatibility with NetBSD.
  Under the examples directories, always find the installed HDF5 executables and scripts using @prefix@ instead of a relative path, because the number of ../ in the relative path will be different on NetBSD than on other systems.
  Make the HDF5 configure script grok NetBSD.
  For portability, insulate the HDF5 library from some system macros.
  Not every system has perl installed in /usr/bin/, so change the shebang (#!) line to `/usr/bin/env perl` to locate perl on the PATH.
  For portability, use the POSIX sh(1) string-comparison operator `=` instead of `==`.
2019-11-05 15:36:09 -06:00
David Young
0b721858e4 Make these scripts relocatable again: derive a relative path for the
original installation prefix from the examples prefix.  Use that
relative path to locate the current installation prefix, always.  Fall
back to an absolute installation prefix if the relative path cannot be
derived.
2019-11-05 15:13:47 -06:00
Jerome Soumagne
c13078a0ed Make wrappers, tests and tools use H5Treclaim() instead of H5Dvlen_reclaim() 2019-10-08 14:30:24 -05:00
David Young
b8a93a7224 Let us override the examples directory using --with-examplesdir=DIR.
This is handy for NetBSD where HDF5 examples are installed
by convention in $prefix/share/examples/hdf5/ rather than in
${prefix}/share/hdf5_examples/, which is the HDF5 default.

Place hdf5_examples/ under ${datarootdir} which on most systems will be
${prefix}/share/, anyway.
2019-10-03 16:01:40 -05:00
David Young
7bb8d071c6 Under the examples directories, always find the installed HDF5
executables and scripts using @prefix@ instead of a relative
path, because the number of ../ in the relative path will be
different on NetBSD than on other systems.

Examples on NetBSD are installed at ${prefix}/share/examples/hdf5/
instead of at ${prefix}/share/hdf5_examples/, by convention.  It may be
the same on other BSDs, I'm not sure.
2019-10-03 16:01:40 -05:00
Dana Robinson
bb8904a75e Merge pull request #1826 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor_pr to develop
* commit '4227b8948d7091205b4f8dc1271d7dcae01bb0fb':
  Reverts the removal of config/conclude_fc.am while keeping the changes to config/gnu-fflags.
  Fixed a couple of typos.
2019-08-01 09:40:01 -05:00
Dana Robinson
4227b8948d Reverts the removal of config/conclude_fc.am while keeping
the changes to config/gnu-fflags.
2019-07-31 22:51:53 -05:00
Allen Byrne
4df595c22d Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit 'd169391529f253a9903b8e6cacf38c59ceefab07':
  Parallel Fortran tests now use the MPI module instead of including mpif.h.
  First stab at gfortran versions. Tested on gfortran 7-9 so far.
  Moved the -std=f2008 option to gfortran 9 for now.
  Updated gfortran options. * Removed conclude_fc.am, which was causing verbose builds. Need to   investigate more, though. * Added gfortran 9 warnings and flags. This will need to be separated   into other version blocks based on when the options first appeared. * The standard is now explicitly set at 2008.
2019-07-29 16:24:15 -05:00
Dana Robinson
d169391529 Merge pull request #1808 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:gnu-flags-work to develop
* commit '7d291d059da6287f769951c4854c566da0b93ce8':
  Parallel Fortran tests now use the MPI module instead of including mpif.h.
  First stab at gfortran versions. Tested on gfortran 7-9 so far.
  Moved the -std=f2008 option to gfortran 9 for now.
  Updated gfortran options. * Removed conclude_fc.am, which was causing verbose builds. Need to   investigate more, though. * Added gfortran 9 warnings and flags. This will need to be separated   into other version blocks based on when the options first appeared. * The standard is now explicitly set at 2008.
2019-07-29 16:13:24 -05:00
Allen Byrne
6a932198aa HDFFV-10529 Update CMake tests to use test fixtures 2019-07-23 16:24:56 -05:00
Dana Robinson
7d291d059d Parallel Fortran tests now use the MPI module instead of including
mpif.h.
2019-07-19 02:48:00 -05:00
Allen Byrne
f724e86727 HDFFV-10845 use of TARGETFILE disables auto emulator 2019-07-17 11:58:04 -05:00
Allen Byrne
ac5680ce8d HDFFV-10845 add_custom_command requires emulator 2019-07-17 11:58:04 -05:00
Allen Byrne
5b258e186b Correct install syntax 2019-07-17 11:58:03 -05:00
Allen Byrne
7ba562a820 HDFFV-10845 fix configure check and PATHs 2019-07-17 11:58:03 -05:00
Dana Robinson
8bd2c81cd5 Updated gfortran options.
* Removed conclude_fc.am, which was causing verbose builds. Need to
  investigate more, though.
* Added gfortran 9 warnings and flags. This will need to be separated
  into other version blocks based on when the options first appeared.
* The standard is now explicitly set at 2008.
2019-07-17 01:23:44 -07:00
Allen Byrne
6333fb8711 Fix packaging issue 2019-07-11 16:24:47 -05:00
Allen Byrne
ae0c16d1f2 HDFFV-10581 fix locations for static pdb files 2019-07-08 12:21:11 -05:00
Quincey Koziol
d5130bb573 Updated configure & CMake compiler flags for GCC 8.x, along with corresponding
changes to warnhist script (and some extra improvements for condensing C++
and Java warnings), and fixed a bunch of warnings.
2019-06-28 09:10:43 -05:00
Allen Byrne
21e147da71 Fix fortran test and test library linking 2019-06-23 13:52:30 -05:00
Quincey Koziol
1ccbdfee58 Add support for GCC 7.x warnings, update warnhist script to account for them,
clean up warnings.
2019-06-21 10:05:34 -05:00
Allen Byrne
aa9a979fbb Add missing fortran mods 2019-06-19 15:42:35 -05:00
Allen Byrne
72116376b1 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit 'cc267767af89bf95807afc4e7b25d82638ef4892':
  HDFFV-10616 add h5fc script
2019-06-19 14:05:10 -05:00
Allen Byrne
11f83e55ec Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit 'b9ec6a6400a556b1250c249e158c4fffafccd550':
  fixed pass_through vol
2019-06-19 13:55:34 -05:00
Allen Byrne
9397d67d91 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit 'b9ec6a6400a556b1250c249e158c4fffafccd550':
  fixed pass_through vol
2019-06-19 13:55:27 -05:00
Scot Breitenfeld
b9ec6a6400 Merge pull request #1746 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:develop to develop
* commit 'a67c578e4b9275fa12b427b6e13021536838a448':
  fixed pass_through vol
2019-06-19 13:52:21 -05:00
Allen Byrne
d1b4eda28a HDFFV-10616 add h5fc script 2019-06-19 10:42:37 -05:00
Allen Byrne
562cd7f3ab Cleanup possible CMake target conflicts 2019-06-19 10:35:55 -05:00
Allen Byrne
d118a47a92 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '712a2a13d8add828d053135a172abb2e819d59ad':
  Fixed a warning in H5CX.c concerning incorrect use of freeing VOL connector info.
  Add H5S_SEL_ITER_SHARE_WITH_DATASPACE selection iterator creation flag, to share dataspace's selection with iterator (and with caution about not modifying or closing the dataspace while the iterator is open).
  Fix misc. typos, etc. from code review
  New hyperslab selection routines and new public selection iterator routines.
2019-06-18 12:12:24 -05:00
M. Scot Breitenfeld
a67c578e4b fixed pass_through vol 2019-06-18 11:39:21 -05:00
Allen Byrne
e7f16c6f2c HDFFV-10805 Add option to only build shared targets
HDFFV-10805 Add ONLY_SHARED_LIBS option and prefer shared over static
HDFFV-10803 Update FindSZIP.cmake find module
Remove unneeded modules and update java modules
2019-06-18 07:46:25 -05:00
Quincey Koziol
0525ee122f New hyperslab selection routines and new public selection iterator routines. 2019-06-15 21:25:28 -05:00
M. Scot Breitenfeld
a0f9e97769 fixed linked library for testing 2019-06-14 14:30:48 -05:00
M. Scot Breitenfeld
79916da303 added missing MOD dependency 2019-06-14 12:08:59 -05:00
M. Scot Breitenfeld
0f947f953d added missing MOD dependency 2019-06-14 09:39:18 -05:00
M. Scot Breitenfeld
d754a86c24 updated static vol_connector build 2019-06-13 16:23:55 -05:00
M. Scot Breitenfeld
022a3f97b1 Merge branch 'develop' of ssh://bitbucket.hdfgroup.org:7999/~brtnfld/hdf5_msb into develop 2019-06-13 15:48:01 -05:00
M. Scot Breitenfeld
b08685f503 updated static vol_connector build 2019-06-13 15:47:55 -05:00
M. Scot Breitenfeld
d1b43964b3 Merge branch 'develop' of ssh://bitbucket.hdfgroup.org:7999/~brtnfld/hdf5_msb into develop 2019-06-13 10:41:39 -05:00
M. Scot Breitenfeld
92bebb782e fixed dependencies 2019-06-13 10:41:31 -05:00
M. Scot Breitenfeld
e5d1da0224 fixed invalid pointer 2019-06-13 10:31:14 -05:00
M. Scot Breitenfeld
c348d7d606 removed unregistering native vol 2019-06-13 09:56:50 -05:00
M. Scot Breitenfeld
46a62130fa fix for cycle dependency 2019-06-13 09:23:12 -05:00
Scot Breitenfeld
9a82fa66d4 Merge pull request #1708 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:H10621 to develop
* commit '0742c15fca95965ed4eb87c6d54f41bb07bd4526':
  makefile clean-up
  move the vol_info to an optional parameter
  added H5Pset_vol
  added vol connector
  added test for vol_connector
  removed H5VL constants
  removed VOLL NULL connector and replaced it with native VOL
  added connector_name test
  added missing files
  add tests
  added more tests
  added missing files
  Implemented VOL APIs and C constants, no tests
  Implemented VOL APIs and C constants, no tests
  initial API impl.
2019-06-12 16:06:21 -05:00
M. Scot Breitenfeld
0742c15fca makefile clean-up 2019-06-12 09:21:59 -05:00