Commit Graph

1251 Commits

Author SHA1 Message Date
Pedro Vicente Nunes
50c9a23725 [svn-r12297] Purpose:
new feature

Description:
added support for the printout of dataset region references differences
added a new test for this
merged the h5diff generator of test files into a single file

Solution:

Platforms tested:
linux 32, 64
solaris

Misc. update:
2006-04-25 13:19:40 -05:00
James Laird
91e56dc68d [svn-r12295] Purpose:
Several bug fixes

Description:
Added config file for Cray X1 (previous file was misnamed)
Simplified some code in hyperslab.c test that seemed to have been
confusing compiler on Cray X1.
Fixed typo in config/commence.am
Cleaned up hl/src/Makefile.am

Solution:
All four fixes should be straightforward.  The failure on Cray was
very difficult to debug, but involved arithmetic errors.
This change seems to fix it.

Platforms tested:
heping, copper, sol, some Cray X1 (more testing when system comes back up)
2006-04-21 14:21:24 -05:00
Quincey Koziol
2521c4084c [svn-r12254] Purpose:
Anti-feature

Description:
    Revert changes to H5G_stat_t struct, to make it compatible with the 1.6.x
branch again.  The information that was added to the H5G_stat_t struct will
be reported through other API routines.

Platforms tested:
    FreeBSD 4.11 (sleipnir) w/C++
    Linux 2.4/64 (mir) w/C++ & Fortran
    Solaris 2.9 (shanti)
2006-04-14 17:21:54 -05:00
Pedro Vicente Nunes
bc66efc788 [svn-r12229] Purpose:
new feature

Description:
1) separated the HL library into "public" and "private" header files, with the same caracteristics as the basic library
2) added the public headers to hdf5.h (with a conditional include macro, defined in configure.in)
3) added the path to HL in all Makefile.am 's , because of the inclusion in hdf5.h

Solution:

Platforms tested:
linux 32, 64
AIX
solaris
with fortran and c++

(one packet table example fails)

Misc. update:
2006-04-12 16:21:38 -05:00
Quincey Koziol
5a2c6b0ae1 [svn-r12221] Purpose:
"Hide" file format changes (for now)

Description:
    Add ifdef's (controlled by the --enable-group-revision configure flag)
to disable group revision changes to the file format, in order to allow alpha
release to go ahead without releasing an unsupported version into the wild.

Platforms tested:
    FreeBSD 4.11 (sleipnir)
    Linux 2.4 32-bit (heping)
    Linux 2.4 64-bit (mir)
    Solaris 2.9 (shanti)
2006-04-09 22:03:30 -05:00
Quincey Koziol
aab7fd598f [svn-r12218] Purpose:
Code cleanup

Description:
    Remove remnents of references to unimplemented H5S_COMPLEX dataspace.

Platforms tested:
    FreeBSD 4.11 (sleipnir)
    Linux 2.4 32-bit (heping)
    Linux 2.4 64-bit (mir)
    Solaris 2.9 (shanti)
2006-04-09 21:51:05 -05:00
Pedro Vicente Nunes
8ba0c76fe5 [svn-r12211] Purpose:
new feature

Description
some more check in related to the print of compression ratios: print warning messages after the print of the dataset name and compression:

Solution:

Platforms tested:
linux
solaris
AIX

Misc. update:
2006-04-07 12:45:40 -05:00
Pedro Vicente Nunes
e6310e0869 [svn-r12208] Purpose:
new feature

Description:
some more formatting for the new printout of compression ratios

Solution:

Platforms tested:
linux
solaris
AIX

Misc. update:
2006-04-06 16:14:01 -05:00
Pedro Vicente Nunes
aabcaea388 [svn-r12207] Purpose:
new feature

Description:
some more formatting of the output for the new compression ratio printout

Solution:

Platforms tested:
linux
solaris
AIX


Misc. update:
2006-04-06 14:18:22 -05:00
Pedro Vicente Nunes
843f369468 [svn-r12206] Purpose:
new feature

Description:
added some alignment for the printout of attributes, so that is formatted with the new printout of datasets compression

Solution:

Platforms tested:
linux
solaris
AIX

Misc. update:
2006-04-06 13:49:36 -05:00
Pedro Vicente Nunes
9d01b26a93 [svn-r12205] Purpose:
new feature

Description:
added the printout of the compression ratio for filters in h5repack, after the filter name, obtained with H5Dget_storage_size, before and after applying the filter

Solution:

Platforms tested:
linux
solaris
AIX

Misc. update:
2006-04-06 13:29:53 -05:00
Pedro Vicente Nunes
12f01d9cd4 [svn-r12199] Purpose:
bug fix

Description:
the percent error calculation in h5diff using double precision floating point were causing different results
on the release and debug versions of Visual Studio version 6, due to a compiler bug

Solution:
used single precision (float)

Platforms tested:
windows
linux
solaris
AIX

Misc. update:
2006-04-04 16:54:48 -05:00
Pedro Vicente Nunes
723e738e04 [svn-r12196] Purpose:
bug fix

Description:
h5ls was not printing root group attributes

Solution:

Platforms tested:
linux 32, 64
solaris

Misc. update:
2006-04-03 15:08:15 -05:00
Pedro Vicente Nunes
cd25a7690a [svn-r12171] Purpose:
bug fixes

Description:
h5dump/h5ls were not displaying long doubles correctly

Solution:
1) the print datatype functions were incorrectly testing for the valid return value from H5Tequal,
   (TRUE), causing the display of an incorrect name of a dataype in error cases from H5Tequal
2) h5tools_print_str did not have a case for native long double
3) added a file generator for a long double dataset
4) added one script test for the long double data (commented , some sytems don't have a native long double match, and the output differs)
5) added a vms file and h5dump script test


Platforms tested:
linux 32, 64
solaris
AIX

Misc. update:
2006-03-28 16:25:10 -05:00
Pedro Vicente Nunes
26e1b18a57 [svn-r12159] Purpose:
bug fix

Description:
h5repack was not dealing with family files

Solution:
use the toolslib function h5tools_open to open the file instead of H5Fopen in h5repack

Platforms tested:
linux
solaris
AIX

Misc. update:
2006-03-27 15:09:01 -05:00
Pedro Vicente Nunes
983e043587 [svn-r12158] Purpose:
bug fix

Description:
h5dump was not printing attributes for the named datatype cases

Solution:

Platforms tested:
linux
solaris
AIX

Misc. update:
2006-03-27 13:22:55 -05:00
Pedro Vicente Nunes
4c0b3c3d5a [svn-r12157] Purpose:
bug fix

Description:
regenerate a binary file. the previous one was not being open on the scale offeset filter dataset, probably due to a solved bug with the corresponding binary file not being updated

Solution:

Platforms tested:
linux

Misc. update:
2006-03-27 10:25:41 -05:00
James Laird
93aa12407f [svn-r12149] Purpose:
Bug fix

Description:
Previous checkin did a bad thing; 'make clean' failed in example directories.

Solution:
Fixed commence.am so that examples no longer break, and fixed a mistake
in conclude.am.

Platforms tested:
heping (minor makefile change)

Misc. update:
2006-03-23 16:26:17 -05:00
Pedro Vicente Nunes
61b46d4b54 [svn-r12146] Purpose:
bug fix

Description:
percent relative error was done using integer arythmetic; use floating point instead
added the case for unsigned long long integer to float conversion

Solution:

Platforms tested:
linux (32,64)
AIX
solaris

Misc. update:
2006-03-23 14:27:17 -05:00
James Laird
524d25498f [svn-r12143] Purpose:
Bug fix

Description:
make check-clean didn't clean results of example tests

Solution:
Fixed Makefiles so that check-clean recurses into example directories.
Also a little Makefile cleanup.

Platforms tested:
mir, modi4, heping, copper
2006-03-23 09:22:34 -05:00
MuQun Yang
d80639dda8 [svn-r12140] Purpose:
portable issue on windows

Description:
setvbuf on visual studio 2005 needs the size to be greater or equal to 2.
<description of setvbuf from msdn library>
Buffer size in bytes. Allowable range: 2 <= size <=
INT_MAX (2147483647). Internally, the value supplied
for size is rounded down to the nearest multiple of 2.

h5import used linebuffer option of setvbuf for stderr and stdout and the size is
0 by default. This causes core dump with visual 2005 on windows 64-bit.



Solution:

1. Use HDsetvbuf inside h5import.c,
2. Define HDsetvbuf inside windows H5pubconf.h for windows to work around
   the core dump of h5import test. This is probably a bug inside visual studio 2005.

Platforms tested:
h5committest( shanti refuses to be connected)
windows 6.0 at XP
visual 2005 at XP-64bit
Misc. update:
2006-03-22 21:25:10 -05:00
Pedro Vicente Nunes
b269dbf0ae [svn-r12134] Purpose:
bug fix

Description:
1) added a more explainative usage message
2) the percent relative error for the integer type (division) was being done using integer arythmetic; use floating point arythmetic instead
3) added a new test for integer percent

Solution:

Platforms tested:
linux (32,64)
AIX
solaris

Misc. update:
2006-03-22 15:53:05 -05:00
Quincey Koziol
3424f9f5d1 [svn-r12128] Purpose:
Code cleanup

Description:
    Clean up some compiler warnings (esp. those flagged on Windows builds)

Platforms tested:
    FreeBSD 4.11 (sleipnir)
    Too minor to require h5committest
2006-03-22 13:11:24 -05:00
Pedro Vicente Nunes
bd73819e26 [svn-r12126] Purpose:
bug fix

Description:
the compare check for the datatype sign was not done in the correct place, causing invalid
comparisons to be made

Solution:
put it on the correct place

Platforms tested:
linux 32, 64
AIX

Misc. update:
2006-03-21 11:01:42 -05:00
Pedro Vicente Nunes
a2f9ebb3ab [svn-r12124] Purpose:
bug fix

Description:
1) the compare flag test was not being put in a correct place, making comparisons attempts that were not supposed to be done
2) some duplicate warnings were being made

Solution:
eliminate the duplicate warnings, put the if compare flag on the correct place

Platforms tested:
linux 32, 64
solaris

Misc. update:
2006-03-20 14:39:46 -05:00
Pedro Vicente Nunes
ddf2b95cbd [svn-r12112] Purpose:
bug fixes

Description:
1) the option logic for the print of long types was done incorrectly (extra lines of code that were not supposed to be there)
2) the print of loong long types was incorrect

Solution:
1) removed the incorrect code
2) made a long long cast on the printf call

Platforms tested:
linux (32 and 64)
solaris

Misc. update:
2006-03-17 09:43:28 -05:00
Pedro Vicente Nunes
66de35b3fe [svn-r12096] Purpose:
temporary fix

Description:
one test is failing in tg-login2

Solution:
comment until solution found

Platforms tested:
none

Misc. update:
2006-03-16 10:03:36 -05:00
Pedro Vicente Nunes
d256c4d9ad [svn-r12095] Purpose:
temporary fix

Description:
2 h5diff tests are failing on mir

Solution:
comment until solution found

Platforms tested:
linux (mir)

Misc. update:
2006-03-15 20:07:32 -05:00
Pedro Vicente Nunes
18a398023a [svn-r12094] Purpose:
bug fix

Description:
long long type was being incorrectly printed

Solution:
added a long_long cast to print function

Platforms tested:
linux

Misc. update:
2006-03-15 16:42:02 -05:00
Pedro Vicente Nunes
e7fd69d4e5 [svn-r12092] Purpose:
bug fix, new features

Description:
when comparing links , the output for the number of differences found was not being done

Solution:
print it
add 3 more tests that test the output of differences for 1) groups 2) datatypes 3) links

Platforms tested:
linux

Misc. update:
2006-03-15 13:08:47 -05:00
Raymond Lu
a2a98a8135 [svn-r12091] Purpose: Support for VAX floating-point types.
Solution: Support VAX float and double types with new byte order. There're some
details not yet included,
1. the alignment detection for VAX order in H5detect.c.
2. support for special values in library conversion functions.
3. the infinity for VAX in H5T_init_inf.
4. support for VAX types in printing hexadecimal format.


Platforms tested: h5committest and fuss.
2006-03-14 17:11:21 -05:00
Quincey Koziol
ee3fdc2dbc [svn-r12084] Purpose:
Code checkpoint

Description:
    The fractal heap code is reasonably stable and is passing all its
current tests, so checkpoint everything with CVS.

    Also, add "statistics" module for v2 B-trees code, which is only a
stub right now.

Platforms tested:
    FreeBSD 4.11 (sleipnir)
    Mac OSX (amazon)
    Linux 2.4 (chicago)
2006-03-13 14:47:16 -05:00
Elena Pourmal
c7b701f657 [svn-r12022] Purpose: Small bug fix
Description: Return value from H5Pget_layout is 0 for the compact datasets;
             It was assumed in the code that it was always greater than 0; therefore
             assertion failed when h5stat walked a compact dataset.

Solution: Fixed assertion statement

Platforms tested: h5stat doesn't have testscript yet; tested manually
                  with tfilters.h5 file on heping.
                  Fix is too minor to test it on multiple platforms.

Misc. update:
2006-03-07 09:32:41 -05:00
Quincey Koziol
dfbf976509 [svn-r12004] Purpose:
New feature & code cleanup

Description:
    Update fractal heap to be able to insert objects into a direct block
hanging off the header.

    Extract "octal dump" code into separate routine so that both the local
heaps & fractal heaps can use it.

    Other code cleanups & support to get this far.

Platforms tested:
    FreeBSD 4.11 (sleipnir)
    Linux 2.4
2006-03-04 17:56:44 -05:00
James Laird
ea9f792cd7 [svn-r12001] Purpose:
Moved gif2h5 tool to hl directory

Description:
Added a tools directory under the hl directory and moved the gif2h5 tool
to that directory.

Solution:
The gif2h5 tool was originally built in the tools directory, but this
introduced dependency issues that required special checks in the
Makefiles.am and required the top-level build order to be changed
because it depended on the HL library.
For simplicity in the Makefiles now and in the future, the gif2h5 tool
was moved to be underneath the hl library.

Platforms tested:
mir, copper, modi4, shanti
2006-03-03 16:49:10 -05:00
Quincey Koziol
3713db1174 [svn-r11967] Purpose:
New feature

Description:
    Check in initial "fractal heap" code, for supporting the group redesign.

    Also, remove some remnants of the segmented heap/block tracker/B+tree code
which I didn't find during the last pass.

Platforms tested:
    FreeBSD 4.11 (sleipnir)
    Mac OSX (amazon)
    Linux 2.4
2006-02-26 22:46:46 -05:00
Quincey Koziol
b2d288804d [svn-r11965] Purpose:
Maintenance

Description:
    Remove half-built (half-baked? :-) implementation of B+tree, block tracker
and segmented heaps.   (In preparation for starting the new heap coding)

Platforms tested:
    FreeBSD 4.11 (sleipnir)
    Linux 2.4 (heping)
2006-02-24 08:45:02 -05:00
James Laird
52f2c4da50 [svn-r11958] Purpose:
Change to release script

Description:
Silenced doxygen's output when bin/release doc is run.  Now if doxygen
has an error the release script will exit.

Someone forgot to run reconfigure after a Makefile.am, so testing the
release script seems to have had the side effect of regenerating a
Makefile.in.

Platforms tested:
mir
2006-02-20 11:39:04 -05:00
Pedro Vicente Nunes
ed9449e009 [svn-r11932] Purpose:
bug fix

Description:
the --disable-hl switch was causing linking errors on gif2h5 that uses image api (bugzilla #1)

Solution:
used the condional macro for hl to build gif2h5

Platforms tested:
linux

Misc. update:
2006-02-10 11:29:34 -05:00
Pedro Vicente Nunes
f6dd21fb11 [svn-r11931] Purpose:
bug fix

Description:
the linking order in Makefile.am of the gif2h5 tool was causing linking errors on some configurations (pgcc, --disable-shared)

Solution:
changed the order of the linking (hl before hdf5)

Platforms tested:
linux, several configurations
solaris

Misc. update:
2006-02-09 16:06:14 -05:00
Pedro Vicente Nunes
7ffbea9c24 [svn-r11919] Purpose:
some code cleaning

Description:

Solution:

Platforms tested:
none

Misc. update:
2006-02-06 11:33:47 -05:00
Pedro Vicente Nunes
35c1f3682e [svn-r11918] Purpose:
bug fix , bugzilla bug #1

Description:
the gif2h5 was not writing HDF5 images correctly

Solution:
use the Image API to write the image, rewrote the writing functionY

Platforms tested:
linux
solaris

Misc. update:
2006-02-06 11:11:48 -05:00
Quincey Koziol
6cf7a8fe7d [svn-r11889] Purpose:
Bug fix

Description:
    Fix compile problem with C++ compiler after recent changes.

Platforms tested:
    FreeBSD 4.11 (sleipnir) w/CC=g++
2006-01-24 09:48:36 -05:00
Quincey Koziol
56e3f667d6 [svn-r11886] Purpose:
Code cleanup

Description:
    Check in some of the code cleanups from working on the external link
support.  (This doesn't include any of the external link features)

Platforms tested:
    FreeBSD 4.11 (sleipnir)
    Mac OSX.4 (amazon)
    Linux 2.4
2006-01-23 15:46:34 -05:00
Pedro Vicente Nunes
5b5ce1f7d4 [svn-r11879] Purpose:
bug fix

a call to sprintf was giving incorrect output in the system Fedora Core 4 with gcc 4.0
(not supported by us, but user reported)

Solution:
the call was using the same buffer for source and destination variables, used different ones





Platforms tested:
linux (mir)
solaris (sol)

Misc. update:
2006-01-11 14:23:38 -05:00
James Laird
51fdb1ebcf [svn-r11799]
Purpose:
Bug fix

Description:
Libraries were listed in the wrong order in tools/gifconv Makefile.am, confusing
the linker.

Solution:
Put HDF5 library after tools library in Makefile.am and ran reconfigure.

Platforms tested:
mir, sleipnir
2005-12-16 10:58:37 -05:00
Pedro Vicente Nunes
3f1ee5ee1d [svn-r11796] Purpose:
h52gif bug fix (494)

Description:

 the reading routines were using file datatype sizes for memory allocation

 Changed the HDF5 read routines to use memory types and sizes,
 for both the image and pallete datasets


Solution:

Platforms tested:
linux
solaris

Misc. update:
2005-12-15 15:07:11 -05:00
James Laird
7a4780e0de [svn-r11792] Purpose:
Makefile fix

Description:
The h5diff parallel test script depends on the serial test script.
Added this dependency.

Solution:
Used SCRIPT_DEPEND variable.  Also added ph5diff (when it is compiled).

Platforms tested:
mir
2005-12-13 16:55:57 -05:00
Albert Cheng
92a508bdb8 [svn-r11790] Purpose:
Improvement

Description:
Some parallel system would dump some system messages in the stdout
stream of an MPI application.  That caused the output matching script
to fail unnecessarily.

Solution:
Added the STDOUT_FILTER feature to filter out those system messages
out of stdout result.

Platforms tested:
Tested in LANL Lambda.
2005-12-13 13:29:09 -05:00
Quincey Koziol
d4667a02cd [svn-r11787] Purpose:
Bug fix

Description:
    Remove several macros that are already defined in H5private.h and are
causing failures on copper.

Platforms tested:
    FreeBSD 4.11 (sleipnir)
    Too minor to require h5committest
2005-12-11 22:47:10 -05:00
Quincey Koziol
fe505c2bbf [svn-r11781] Purpose:
Bug fix

Description:
    Include more header files with prototypes to make CC=g++ builds work.

Platforms tested:
    FreeBSD 4.11 (sleipnir) w/CC=g++
    Too minor to require h5committest
2005-12-10 12:43:37 -05:00
Quincey Koziol
88c15b1617 [svn-r11771] Purpose:
Code cleanup

Description:
    Fix a bunch of warnings flagged by Windows compilers.


Platforms tested:
    FreeBSD 4.11 (sleipnir)
    Too minor to require h5committest
2005-12-08 13:34:51 -05:00
James Laird
0f870b0f47 [svn-r11741] Purpose:
Bug fix

Description:
Fortran type generation was broken in two ways.  Fixed both.

Solution:
Firstly, there were a couple of path problems.  Fixed a typo and
specified the full path of a file.
Secondly, the dependencies weren't right when building with HDF5-specific
commands (make lib, make check-s, etc.).  Tweaked dependencies
to fix the problem.

Platforms tested:
mir, modi4, sleipnir
2005-11-18 15:31:53 -05:00
James Laird
4f8ca8e026 [svn-r11738] Purpose:
Configure feature

Description:
Added 'make trace' target.

Solution:
Added tracing to 1.7.  This was done automatically in 1.6, but left out
of 1.7 until now (oops!).
Tracing in 1.7 only happens manually, when the user types 'make trace.'
Tracing automatically requires more framework than it's worth.
I also fixed a couple of tracing bugs and ran trace.

Platforms tested:
mir, sleipnir, modi4

Misc. update:
2005-11-18 10:55:22 -05:00
James Laird
75ea10e5f5 [svn-r11737] Purpose:
Bug fix

Description:
Before this checkin, 'gmake check-s' would fail if there was a file in
the current directory named 'check-s'.
This is fixed under gmake (not sure how to fix for other makes).

Solution:
check, progs, install, etc. are what gmake calls "phony" targets,
which means that no file should be created.  These targets can be
specified by a line of the form
.PHONY: check progs install ...
Automake adds this line for targets it knows about, but HDF5 has a
lot of custom rules.  This checkin adds a .PHONY line for those rules.
I believe that only gmake recognizes the .PHONY line (at least, pmake
doesn't seem to), but a partial solution is better than none.
This error should occur very rarely anyway (the user has to manually
create files with names like 'build-check-s' or '_test').

Platforms tested:
mir, sleipnir, modi4
2005-11-17 13:49:28 -05:00
Albert Cheng
706885260d [svn-r11736] Purpose:
Cleanup.

Description:
Removed reference to H5_HAVE_VSNPRINTF and the corresponding abort
since we do not use the home-grown potentially memory wacking version
any more.

Platforms tested:
heping.

Misc. update:
2005-11-16 13:24:44 -05:00
Quincey Koziol
da16ec38eb [svn-r11730] Purpose:
Bug fix

Description:
    Correct use of H5Gget_objinfo() which recent compact group checkins
exposed: we were attempting to follow dangling soft links.

Solution:
    Don't follow links for H5Gget_objinfo() when initializing object tables
for h5dump.

Platforms tested:
    Solaris 2.8 w/64-bit enabled
    Linux 2.4
    FreeBSD 4.11 (sleipnir)
2005-11-15 19:46:30 -05:00
Quincey Koziol
a1708eb023 [svn-r11712] Purpose:
New feature

Description:
    Check in baseline for compact group revisions, which radically revises the
source code for managing groups and object headers.

WARNING!!!!  WARNING!!!!  WARNING!!!!  WARNING!!!!  WARNING!!!!  WARNING!!!!
WARNING!!!!  WARNING!!!!  WARNING!!!!  WARNING!!!!  WARNING!!!!  WARNING!!!!

    This initiates the "unstable" phase of the 1.7.x branch, leading up
to the 1.8.0 release.  Please test this code, but do _NOT_ keep files created
with it - the format will change again before the release and you will not
be able to read your old files!!!

WARNING!!!!  WARNING!!!!  WARNING!!!!  WARNING!!!!  WARNING!!!!  WARNING!!!!
WARNING!!!!  WARNING!!!!  WARNING!!!!  WARNING!!!!  WARNING!!!!  WARNING!!!!


Solution:
    There's too many changes to really describe them all, but some of them
include:
    - Stop abusing the H5G_entry_t structure and split it into two separate
        structures for non-symbol table node use within the library: H5O_loc_t
        for object locations in a file and H5G_name_t to store the path to
        an opened object.  H5G_entry_t is now only used for storing symbol
        table entries on disk.

    - Retire H5G_namei() in favor of a more general mechanism for traversing
        group paths and issuing callbacks on objects located.  This gets us out
        of the business of hacking H5G_namei() for new features, generally.

    - Revised H5O* routines to take a H5O_loc_t instead of H5G_entry_t

    - Lots more...

Platforms tested:
    h5committested and maybe another dozen configurations.... :-)
2005-11-14 21:55:39 -05:00
James Laird
ddb4b4b51a [svn-r11668] Purpose:
Copyright fix

Description:
Added a blank line so that Automake would put the copyright at the top of
the file.


Platforms tested:
Trivial change

Misc. update:
2005-11-01 16:06:29 -05:00
James Laird
617522e467 [svn-r11646] Purpose:
Bug fix/feature

Description:
Added support for -shlib in h5fc and h5c++.
Made check-install use -shlib when only shared libraries have been installed.

Solution:
h5fc and h5c++ didn't recognize -shlib.  Stole code from h5cc to link against
shared libraries.
When static libraries are disabled, the examples Makefiles will automatically
use the -shlib option to link against shared libraries.  Thus,
--disable-static and make check-install should work together.

Platforms tested:
heping(disable-static, enable-static, fortran, c++), modi4 (disable-static, fortran, c++, parallel, enable-static)
2005-10-31 16:35:49 -05:00
Quincey Koziol
ebda068f2e [svn-r11619] Purpose:
Update copyrights.

Description:

Solution:
    This should address almost all of the "simple" cases in the repository.
There's still work to do, but it's going to require actually thinking about
the files in question instead of just copying & pasting.
2005-10-29 11:10:23 -05:00
James Laird
91cbcdf42f [svn-r11612] Purpose:
Bug fix

Description:
Failed parallel tests now cause make to exit with an error.

Solution:
Edited config/conclude.am to throw an error if parallel test programs fail.

Platforms tested:
heping, modi4
2005-10-27 17:30:46 -05:00
Pedro Vicente Nunes
60ef06bdf6 [svn-r11607] Purpose:
new h5diff test

Description:
added a test to the test h5diff script that compares a file to itself.
this test is done to test some features of the library that
open the same file and the root group twice

Solution:

Platforms tested:
linux
solaris

Misc. update:
2005-10-26 09:27:11 -05:00
James Laird
69293e09df [svn-r11602] Purpose:
Bug fix

Description:
Removed detection of pdb from configure.in as a corollary to removal
of pdb2hdf5 tool.


Platforms tested:
mir, modi4
2005-10-24 14:31:06 -05:00
James Laird
8619af74a4 [svn-r11601] Purpose:
Added additional targets to build-all

Description:
Surveyed files to find out which ones are not built.
Added test/space_overflow and perform/benchpar to programs built with
--enable-build-all.
Discovered that tools/misc/pdb2hdf5 and tools/misc/h5import were
obsolete and deleted them.

Platforms tested:
mir, modi4, sol

Misc. update:
Update of release file and removal of --enable-pdb2hdf5 to follow.
2005-10-24 13:58:15 -05:00
Pedro Vicente Nunes
c997f29d60 [svn-r11584] Purpose:
bug fix


Description:

an assertion after the search for objects was saying that the number of
objects in file should be > 0
removed it, since there can be a case where the number of objects is 0.
in this case this was found by a case where zlib was not present and the output file
was not written any objects to

note: this was only detected on the windows batch files, that do not have a conditional
condition to not run tests when a filter is not present


Solution:

Platforms tested:
linux

Misc. update:
2005-10-19 11:46:12 -05:00
Elena Pourmal
f18867f1db [svn-r11577] Purpose: Maintenance/small VMS bug fix
Description: VMS doesn't like file names with more than one "."
             Some h5repacktst output file names were of the form
             <name>.out.h5 causing h5repacktst to choke.

Solution: Renamed output files to be of the form <name>out.h5

Platforms tested: heping, unnamed VMS machine

Misc. update:
2005-10-18 10:55:32 -05:00
James Laird
87a56d9da2 [svn-r11573] Purpose:
Bug fix

Description:
Changed configure.in to use an environment variable TR to set the path
to the tr utility.

Solution:
There are two kind of tr on Solaris with slightly different syntax.
HDF5's configure relies on the "standard" tr.  Traditionally, HDF5ers
have needed to make sure that the "right" tr was found before the
wrong one in their path; now they can use an environment variable.

Platforms tested:
mir, shanti, sol

Misc. update:
Forgot to update release notes.  Off to do that now.
2005-10-17 16:38:38 -05:00
James Laird
bcf3f797d4 [svn-r11566] Purpose:
Makefile bug fix

Description:
Previously, automake didn't output rules to build perform/mpi-perf or
the test/gen_* programs.
Now these can be built by typing 'make mpi-perf' (or 'make foo') or by
configuring with --enable-build-all.

Solution:
Automake doesn't like having rules for programs it doesn't build.  Tricked
it by having these programs built "sometimes"--whenever the user enables
--build-all.  This should be used mostly for testing and to ensure that
these helper programs compile.

***IMPORTANT***
These programs do *not* currently compile.  When --enable-build-all is used
(not the default), gen_new_fill fails because it uses an old API.  This is
an existing "bug" that has simply been exposed by this checkin.

Platforms tested:
sleipnir, modi4, sol

Misc. update:
2005-10-14 17:52:13 -05:00
Albert Cheng
8f7c1ce206 [svn-r11539] Purpose:
Added Copyright notice.

Platforms tested:
Tested in heping.
2005-10-11 12:25:18 -05:00
Albert Cheng
2669c8e9fe [svn-r11500] Bug fix.
SETUP Was using "cp" command which means file $2 will inherit the permission
setting of file $1.  If $1 is read-only, so will $2.  That will cause
failure when the test attempts to write it later on.  Changed to use
the "cat" command.

Tested in LANL QSC and Flash.
2005-10-05 13:59:38 -05:00
Albert Cheng
55c4f63df7 [svn-r11478] Purpose:
bug fix.

Description:
When a parallel test script test fails, make would continue because the
way it was setup inside a for loop.  Fixed it by issuing an exit 1 inside
the loop.

There was also a typo error in the newer command comparision that it
must be $${chkname} in order to be valid.  Also, the test script itself
was not checked in the newer lists.  All fixed.

Platforms tested:
h5committested and also hand tested in heping pp mode.
2005-09-29 00:17:06 -05:00
James Laird
3267458b64 [svn-r11446] Purpose:
Bug fix

Description:
Massaged the newer script and config/conclude.am to make SX6 happy.


Platforms tested:
SX6, sol, mir
2005-09-20 16:46:24 -05:00
Pedro Vicente Nunes
8d7dbd9dc1 [svn-r11445] Purpose:
h5diff new feature

Description:

a user asked for the message
"Some objects are not comparable"
to be more noticeable

Solution:


--------------------------------
Some objects are not comparable
--------------------------------




Platforms tested:
linux

Misc. update:
2005-09-20 13:56:59 -05:00
Pedro Vicente Nunes
dca5ad5754 [svn-r11443] Purpose:
new features

Description:

added support for the scale/offset filter
there is a new filter symbol 'SOFF'
-f SOFF=<scale_factor,scale_type>

scale_factor = integer
scale_type = 'IN' or 'DS'


Solution:

Platforms tested:
Linux
SunOS

Misc. update:
2005-09-19 16:12:35 -05:00
Albert Cheng
c0e83899c3 [svn-r11431] Purpose:
New feature.

Description:
Added the time command to the make check target to report time usage
of the execute of each test and test scripts.  This gives us some idea
how long each test takes and some vague idea it is compute bound or
not.

powerpc-ibm-aix5.x:
Change $RUNPARALLEL default setting to allow it being invoked by the
time command.

Platforms tested:
h5committested.
2005-09-17 22:04:28 -05:00
Quincey Koziol
9a8933bb69 [svn-r11425] Purpose:
Add new tool

Description:
    Add 'h5stat' tool to repo.

Platforms tested:
    FreeBSD 4.11 (sleipnir)
    Linux 2.4
2005-09-17 11:14:32 -05:00
James Laird
ae2a313b5b [svn-r11421] Purpose:
Feature

Description:
Added H5_CFLAGS, etc. to 1.7 branch.
Now compilation flags can be put in H5_*FLAGS and they'll be used when
building hdf5 but not in h5cc.


Platforms tested:
mir, sleipnir, modi4

Misc. update:
2005-09-16 16:26:17 -05:00
James Laird
b656c90c8a [svn-r11420] Purpose:
Bug fix

Description:
Disabled C++ shared libraries for Sun Workshop compiler.

Solution:
This bug only seems to happen when using the -xarch=v9 flag to compile in
64-bit mode, but disabling shared libraries entirely for this compiler is
an easier fix (I don't know how to detect 64 bit mode from the command line).
The framework for disabling shared libraries for other C++ compilers is
in place.

Platforms tested:
sol, mir, sleipnir, modi4
2005-09-16 16:16:11 -05:00
James Laird
cc8f7d98bf [svn-r11418] Purpose:
Bug fix/feature

Description:
Disabled shared libraries for a number of Fortran compilers that don't
support them.
This allows other compilers to support shared Fortran libraries.

Solution:
Added a conditional, SHARED_FORTRAN_CONDITIONAL, which is true if
Fortran supports shared libraries.  It is set in configure.in.

Platforms tested:
mir, sleipnir, colonelk, heping
2005-09-15 16:30:06 -05:00
James Laird
33beeb7f55 [svn-r11411] Purpose:
Bug fix

Description:
Building with --disable-static seems to have been broken on several platforms.
Fixed this.
Configure will now disable shared libraries automatically when using pgf90
or when building on Cygwin.

Solution:
To avoid errors when using shared libraries with pgf90 (which I had not
realized were compiler-specific), I had manually set convenience libraries
to use the -static linking flag.  Apparently, this is not necessary, and
caused these libraries to be created as empty archives when --disable-static
was used.
Also, some libraries were including other libraries, which was not
necessary.
I also fixed code in configure.in to correctly detect whether shared
or static libraries are enabled, and moved code that disables shared libraries
to before libtool is created (rather than editing libtool after the fact).
Despite repeated warnings that only one shared library can be linked at a
time, I have yet to have shared libraries break the linking of tests on
any system.  We'll see if the Daily Tests turn up anything.

Platforms tested:
mir (fortran, C++), sleipnir (C++), modi4 (fortran, C++, parallel),
sol (fortran, C++), cygwin
2005-09-13 17:30:33 -05:00
Elena Pourmal
946f03bd2c [svn-r11404] Purpose: Maintenance
Description:  Brought back changes from SX-6.

Solution: Program  will not compile. Fixed.

Platforms tested: SX-6, heping and mir with new g95

Misc. update:
2005-09-12 22:21:00 -05:00
Pedro Vicente Nunes
b55f9a0ada [svn-r11388] Purpose:
bug fix

Description:
during the generation of some test files, H5Fclose was not called
during the #ifdef detection of the scale ofsset filter, a wrong macro symbol was used

Solution:

Platforms tested:
linux

Misc. update:
2005-09-12 11:26:29 -05:00
Quincey Koziol
90103afad6 [svn-r11337] Purpose:
Code cleanup

Description:
    Changed some scale+offset filter symbols from H5_SO_... -> H5Z_SO_...
to indicate that they are in the H5Z package.

Platforms tested:
    FreeBSD 4.11 (sleipnir)
    Too minor to require h5committest
2005-09-01 17:46:16 -05:00
MuQun Yang
926b953316 [svn-r11329] Purpose:
code changes due to the change of scaleoffset API.

Description:

Solution:

Platforms tested:

Misc. update:
2005-08-31 17:15:10 -05:00
MuQun Yang
c944a93983 [svn-r11328] Purpose:
code change due to the change of scale offset filter

Description:

Solution:

Platforms tested:

Misc. update:
2005-08-31 17:14:16 -05:00
MuQun Yang
c396fb7c06 [svn-r11327] Purpose:
Updating the filter based on H5Pset_scaleoffset API change.

Description:
Still more changes are needed for the filter for floating-point.

Solution:

Platforms tested:

Misc. update:
2005-08-31 17:13:13 -05:00
Albert Cheng
6d3715e537 [svn-r11323] Purpose:
tidy up.

Description:
MPE option created *.clog file whenever it is executed in MPI.
The cleanup of *.clog files were done in individual Makefile.in.
Often, it is forgotten.

Solution:
Moved the cleaning of *.clog files to CHECK_CLEANFILES in commence.am
so that it is applied whenever check-clean is called.

Platforms tested:
heping pp using MPE.
2005-08-31 15:03:52 -05:00
James Laird
66af6dce17 [svn-r11319] Purpose:
Bug fixes

Description:
This checkin fixes an occasional error on kelgia on sol during distclean.
It also causes test scripts to depend properly on the programs they're
supposed to be testing.

Solution:
The kelgia bug was due to some files being cleaned by automake and manually.
Removed the manual cleaning in src/Makefile.am.
Test script dependencies now need to be specified manually, since the
makefile can't guess what they test from their name.  Currently all test
scripts in a given directory have a single list of dependencies--this was
easy and seems to be sufficient.
These dependencies are listed in the SCRIPT_DEPEND variable in the Makefile.am.

Platforms tested:
heping, mir, modi4, sol

Misc. update:
2005-08-30 18:42:39 -05:00
Quincey Koziol
fefbe61aca [svn-r11304] Purpose:
Code cleanup (sorta)

Description:
    Adjust H5G_stat_t to prepare for eventual "external link" information.
This also puts the information for regular objects and soft links into more
obviously separate places.

Platforms tested:
    FreeBSD 4.11 (sleipnir)
    Linux 2.4
2005-08-27 08:34:28 -05:00
Albert Cheng
538d37a1bc [svn-r11303] Purpose:
minor tidy up.

Description:
Changed both test programs and test scripts to use the same suffixes
(.chkexe and .chklog).  Changed from .log to .chklog to avoid running
into potential conflicts by other "things" (e.g., config.log).

Tested:
Heping.
2005-08-26 17:24:27 -05:00
Quincey Koziol
a4329aaa47 [svn-r11297] Purpose:
Code cleanup & speedup

Description:
    Refactor h5dump & related code to be considerably cleaner & faster for
files with large #'s of objects.

Platforms tested:
    FreeBS 4.11 (sleipnir)
    Linux 2.4
2005-08-25 15:16:40 -05:00
Albert Cheng
80a9a3df0c [svn-r11286] Purpose:
bug fix

Description:
The set of h5diffdebugN macros that printed nothing did not have
the proper number of parameters.  Some compilers (gcc) did not
like it.

Solution:
Fixed them to have the matching number of parameters.

Platforms tested:
heping pp (using both mpich-icc and mpich-gcc), modi4 pp.
2005-08-22 10:55:54 -05:00
Quincey Koziol
b7d43b0cf0 [svn-r11283] Purpose:
Code cleanup

Description:
    Clean up code somewhat:
        - Move from HDmemset() -> H5G_ent_reset() to clear out group entry info
        - Simplify H5G_unlink() call
        - Use portability macros instead of direct system calls in more places
        - Improve readbility by neatening whitespace, etc.
        - Move some macros into source code module instead of header files

Platforms tested:
    FreeBSD 4.11 (sleipnir)
    Linux 2.4
2005-08-20 14:28:40 -05:00
Albert Cheng
20c9e7bc06 [svn-r11275] Purpose:
cleanup

Description:
Disable the debug printout.

Platforms tested:
heping pp.

Misc. update:
2005-08-20 10:15:25 -05:00
Albert Cheng
f27f7c7821 [svn-r11263] Purpose:
Bug fix.

Description:
Fixed ph5diff Bugs that hanged the last test.

Tested in heping and copper in pp mode.
2005-08-18 14:37:32 -05:00
Albert Cheng
34ce02937f [svn-r11262] Purpose:
Bug fix.

Description:
Added filtering of h5diff debug output.
Restored the skipped test to be tested again.
2005-08-18 14:36:22 -05:00
Albert Cheng
9baadd2df5 [svn-r11261] Purpose:
Feature and bug patch

Description:
Added the SKIP feature which skips a test.

The latest code will hang the very last test.  Skip that test for now.

Platforms tested:
heping pp.
2005-08-17 23:32:15 -05:00
Raymond Lu
7a30bcece9 [svn-r11260] Purpose: Bug fix
Description: repart_test.c was mistakenly treated as a tool, instead of a test program.

Solution: Took it out of the tool list.

Platforms tested: fuss - simple change.
2005-08-17 15:49:43 -05:00
Albert Cheng
7bbea13711 [svn-r11259] Purpose:
Bug fix

Description:
ph5diff had been hanging in Tflops.  Found out that vsnprintf ph5diff
uses was a local coded that did not limit printing according to the size
argument.  That resulted in buffer overflow and other problems.

Solution:
Added some sort of size checking in the home-grown vsnprintf and
had ph5diff checked for error return of vsnprintf.  Leon also
revamped the ph5diff manager's way of handling communications with
the workers.  That eliminated all but the last case of hanging.

Platforms tested:
Tflops.

Misc. update:
2005-08-17 14:21:36 -05:00