Commit Graph

14090 Commits

Author SHA1 Message Date
Allen Byrne
73bb11dda3 [svn-r26208] Update cmake minimums 2015-02-18 11:56:22 -05:00
Scot Breitenfeld
69d4bda97c [svn-r26206] Reverting change r26204 2015-02-18 11:45:03 -05:00
Scot Breitenfeld
a75fd4c960 [svn-r26205] Fix for HDFFV-8908:
h5tenum_insert_f does not work with default 8 byte integers (xlf compiler)
2015-02-18 11:42:47 -05:00
Mohamad Chaarawi
546899dcd6 [svn-r26203] increase string size to 128 for MPE function event name. 2015-02-18 10:53:08 -05:00
Dana Robinson
3db1c5f635 [svn-r26200] Fixed mixed tabs and spaces before making changes.
No code changes.
2015-02-17 16:30:33 -05:00
Quincey Koziol
85504f5376 [svn-r26195] Description:
Switch from enum H5D_CHUNK_BTREE to H5D_CHUNK_IDX_BTREE, along with a couple
of minor whitespace touchups.

Tested on:
    Mac OSX/64 10.10.2 (amazon) w/serial & parallel
    Linux/32 2.6.x (jam) w/serial
2015-02-17 15:11:39 -05:00
Quincey Koziol
595b01658e [svn-r26193] Description:
Fix locking error when splitting root node of v1 B-tree, and simplify
the iteration over entries in a v1 B-tree (avoiding using the sibling pointer
also).

Tested on:
    Mac OSX/64 10.10.2 (amazon) w/serial & parallel
    Linux/32 2.6.x (jam) w/serial
2015-02-17 14:30:27 -05:00
Quincey Koziol
fd79bc3c1a [svn-r26191] Description:
Track the min & max keys for a v2 B-tree, so it can more efficiently
determine if a key is present in the B-tree.

Tested on:
    Mac OSX/64 10.10.2 (amazon) w/parallel & serial
    Linux/32 2.6.x (jam) w/serial
2015-02-17 10:38:54 -05:00
Scot Breitenfeld
b28b5fade9 [svn-r26188] Merged autotools fixes into the trunk:
HDFFV-9089, HDFFV-9091, HDFFV-9092, HDFFV-9094, HDFFV-9095
2015-02-16 12:17:49 -05:00
Mohamad Chaarawi
74fbb9e327 [svn-r26180] merge configure fixes for HDFFV-9068,9069,9096,9097,9135 from autotools_rework branch:
- Remove Infering parallel compilers (C and Fortran) from configure.ac
- Remove restriction to build shared with parallel
- Cleanup parallel sections in configure.ac
- remove large file support checks
- MPE fixes.

tested with h5committest.
2015-02-16 11:17:03 -05:00
HDF Tester
9a376e4ee9 [svn-r26177] Snapshot version 1.9 release 214 2015-02-15 06:13:34 -05:00
Albert Cheng
d0c224ae18 [svn-r26173] HDF5-9117: if testing for proper working 'tr' command is needed.
Long time ago, the tr command in some platform does not work properly and this test was added
to detect broken tr and abort the configure process.
We are not aware of such broken tr command in current systems and decided to retire this test.

The setup of ${TR} is still needed as it is used to process DEBUG_PKG.

Tested: h5committested plus using "./configure --enable-debug=all" in jam.
2015-02-13 19:24:50 -05:00
Scot Breitenfeld
7fcba33763 [svn-r26172] Fix for: HDFFV-8685 -- Have one include file to use for HL libraries
added hdf5.h to hdf5_hl.h
2015-02-13 16:32:44 -05:00
Scot Breitenfeld
999440cbf8 [svn-r26170] Fix for HDFFV-8559
Correction of mistyped variable and removed implicit typing for interfaces.
2015-02-13 15:57:52 -05:00
Allen Byrne
d1897cb038 [svn-r26162] Update versions 2015-02-12 16:56:21 -05:00
Allen Byrne
ab75986b8c [svn-r26161] Fix cmake case.
Turn on F2003 by default.
Set source properties in fortran cmake files.
2015-02-12 16:52:48 -05:00
Neil Fortner
1b78408184 [svn-r26149] Fix potential memory error reported by valgrind in
H5D__link_chunk_collective_io.  This would occur when performing collective I/O
on a dataset with only 1 chunk, and a participating process had nothing to read
or write.

Tested: jam, koala, ostrich (h5committest)
2015-02-09 11:31:28 -05:00
HDF Tester
f4a60fc34c [svn-r26146] Snapshot version 1.9 release 213 2015-02-08 06:05:07 -05:00
Scot Breitenfeld
06d1971f41 [svn-r26124] Fixed issue with deprecated symbols for H5G constants 2015-02-04 09:38:16 -05:00
Scot Breitenfeld
5060fb1050 [svn-r26122] Fix for HDFFV-9040 h5rget_object_type_f returns different types than indicated by API
Slight change of global variable definitions from C.

Tested: jam.
2015-02-03 13:52:27 -05:00
Allen Byrne
3946ec882b [svn-r26112] Add quotes around name 2015-02-02 13:02:57 -05:00
Allen Byrne
ba35eb0f05 [svn-r26109] Correct name of source file 2015-02-02 13:00:34 -05:00
Allen Byrne
fc93c6fe70 [svn-r26106] Disable flush1/flush2 test under debug VFD on Windows. 2015-02-02 12:01:15 -05:00
HDF Tester
67f41bf9f8 [svn-r26092] Snapshot version 1.9 release 212 2015-02-01 06:03:18 -05:00
Mohamad Chaarawi
a9cf3b658b [svn-r26087] update build procedure for Hopper (Cray).. only static now.
Will add shared when we introduce support later.
2015-01-30 15:49:39 -05:00
Allen Byrne
e05c75ea4e [svn-r26074] fix test destination 2015-01-29 12:58:27 -05:00
Allen Byrne
055348122d [svn-r26040] HDFFV-9018: Install pdb files to bin folder with dlls. 2015-01-26 15:23:19 -05:00
Allen Byrne
eb3900554e [svn-r26036] HDFFV-8736: Patch H5PL.c and test for cygwin plugin support.
Tested: local linux and cygwin
2015-01-26 13:03:18 -05:00
Mohamad Chaarawi
f4e69ad579 [svn-r26012] make the print format for address overflow error windows friendly. 2015-01-23 09:57:35 -05:00
Scot Breitenfeld
374f064f82 [svn-r26011] Added (i.e. re-added) missing h5oget_info_c definition. 2015-01-23 08:54:04 -05:00
Scot Breitenfeld
1e3f530848 [svn-r26010] Fix for:
HDFFV-9049
Intel 15.0 15.0.1 Fails with --enable-fortran2003

Added BIND to the Fortran 2003 functions.

Tested: windows (tested concept)
        linux (--enable-fortran and --enable-fortran2003)
2015-01-22 16:56:03 -05:00
Scot Breitenfeld
324f087d05 [svn-r26009] Code Comment cleanup:
-----------------------
Remove the numbers in the comments associated with:

       H5G_UNKNOWN_F (-1)
       H5G_LINK_F      0
       H5G_GROUP_F     1
       H5G_DATASET_F   2
       H5G_TYPE_F      3

These should not be defined as a number since they can changed. They should be considered named parameters, not actual values. 

HDFFV-9040
h5rget_object_type_f returns different types than indicated by API
2015-01-22 16:53:30 -05:00
Mohamad Chaarawi
543a8d9d86 [svn-r26005] fix error return value. minor change. 2015-01-22 14:26:42 -05:00
Mohamad Chaarawi
5eee1d7d7e [svn-r26002] move checks on reading/writing beyond file eoa outside of the file drivers and into a centralized place in H5FD_read/write.
tested h5committest.
2015-01-22 12:15:21 -05:00
Mohamad Chaarawi
a24e3e5c86 [svn-r25994] revert adding the has_mpi_atomicity feature flag and use the has_mpi
flag instead.
2015-01-21 13:57:55 -05:00
Mohamad Chaarawi
de47d219c9 [svn-r25993] remove last usage of IS_H5FD_MPIO. 2015-01-21 12:05:03 -05:00
Allen Byrne
21ef17f951 [svn-r25990] Add VFD flush2 depends on flush1 property to test 2015-01-21 09:31:46 -05:00
Allen Byrne
3b742b733b [svn-r25987] Use variable instead of hard coded value 2015-01-20 15:02:17 -05:00
Allen Byrne
aafac8d770 [svn-r25986] HDFFV-9060: Changed test folder to use different test folders for VFDs and regular. Needed to set srcdir env var and specify working folder to the folders where all the reference files were copied.
Tested: local linux
2015-01-20 14:44:28 -05:00
Mohamad Chaarawi
aac2bb6182 [svn-r25984] change the message flag H5O_MSG_FLAG_FAIL_IF_UNKNOWN to
H5O_MSG_FLAG_FAIL_IF_UNKNOWN_AND_OPEN_FOR_WRITE. Will add a new
H5O_MSG_FLAG_FAIL_IF_UNKNOWN_ALWAYS with the new avoid_truncate patch
coming later.

tested h5committest
2015-01-20 12:17:05 -05:00
Mohamad Chaarawi
1949c40bfd [svn-r25983] HDFFV-1125: Eliminate IS_H5FD_MPI() macro use in the library and replace with driver feature flag(s).
Add an MPI atomicity feature flag and remove the macro from the library.

tested Parallel on Jam.
2015-01-20 10:26:45 -05:00
HDF Tester
234e77b3f9 [svn-r25981] Snapshot version 1.9 release 211 2015-01-18 06:01:21 -05:00
Scot Breitenfeld
485faa47e7 [svn-r25980] Reverting check-in 25978, C_LONG_DOUBLE seems to be 16 bytes sometimes and 10 bytes other times. Not sure why. 2015-01-15 10:18:45 -05:00
Scot Breitenfeld
c6cf45e3e7 [svn-r25978] Bug fix for HDFFV-8847
Tested: h5committest
2015-01-13 11:23:07 -05:00
HDF Tester
d3ddfe842d [svn-r25975] Snapshot version 1.9 release 210 2015-01-11 06:05:36 -05:00
Albert Cheng
0ebac5f389 [svn-r25971] Update with retirement of AIX 5.3 and addition of AIX 6.1 support. 2015-01-09 10:33:54 -05:00
Mohamad Chaarawi
50c5f1ab2c [svn-r25963] Do not remove the prefix in the chunk alloc file, otherwise it makes
the H5Fcreate fail when prefix is specified.

tested parallel on Jam.
2015-01-08 12:36:10 -05:00
Allen Byrne
5da20c221e [svn-r25955] Added Perform and io_timer back into build.
Tested: local linux cmake
2015-01-05 16:52:26 -05:00
Albert Cheng
6a982a7690 [svn-r25954] HDFFV-9046: reorganize hdf5/perform, step 2
Last changes had caused problems with Windows platform:
1. H5private.h in io_timer.h is not accessible in the distributed shared library of tools.
   Need to move it to io_timer.c.
2. debug_start_stop_time() would not be available outside of h5perf. Some favor of compiler
   does not like it.  Screened it out for now.
3. mere "extern" is not good enough for Windows shared library. Must mark them as DLL. Need to mark them as 
   "H5TOOLS_DLL".
4. STANDALONE mode is broken. Screened out the code for now.

Tested; h5committest.
2015-01-05 16:47:34 -05:00
Allen Byrne
671006a10d [svn-r25953] Comment out printf statement as it caused system resource issues on Windows. Test now executes in 1/10 of time.
Tested: local linux and Windows
2015-01-05 16:32:43 -05:00