Commit Graph

876 Commits

Author SHA1 Message Date
Allen Byrne
7225519e2a Revert declaration used in macro. 2019-12-07 08:38:06 -06:00
Allen Byrne
73c8e2f9d6 Revert declaration deletion. 2019-12-07 08:31:12 -06:00
Allen Byrne
fce2a31dc5 Address compile warnings 2019-12-06 13:55:34 -06:00
Allen Byrne
cf61098fa6 Fix compile errors - mostly in jni 2019-12-06 12:57:38 -06:00
Allen Byrne
e8ad5f6d1a HDFFV-10876 Update dump to match DDL spec 2019-12-05 17:21:02 -06:00
Allen Byrne
d552e97eae Update h5ls help and rework dump_mem routines for attrs 2019-12-04 16:36:32 -06:00
Allen Byrne
7ad3d62a5c Update data output reference 2019-12-03 16:05:35 -06:00
Allen Byrne
12fd139e90 Update reference files and fix int as string 2019-12-03 14:43:05 -06:00
Allen Byrne
7e92c2e3e5 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '0772b975d1d2bfa15aedeb4b6e2c2aac78c61a2f':
  Fix missing free in H5T__ref_mem_read()
  Fix bugs in H5VL file comparison code.  Add short circuit success to H5VL_cmp_connector_cls().
  Implement file comparison VOL callback.  Other changes to allow references to work with non-native connectors.  There is a bug somewhere.
  Add support for point selections to H5S_select_project_intersection.
  Remove H5VL_NATIVE_FILE_GET_FILE_ID and add H5VL_OBJECT_GET_FILE
  Revert "Make a squash commit of 'Quiet some warnings by adjusting warnings level and fixing some code.' (commit 5c911d8baf)"
  Revert "Oops, remove more C99 designated initializers for VS 2010 compatibility."
  H5R: fix H5Tconv to check for null references
  Trivial parameter renaming in VOL API calls.
  Move checking for zero offset in selection adjust calls to the selection callbacks.  This makes the procedure for checking it consistent across selection types and between _s and _u, ensures it is always is performed even when called within the H5S package, and removes the redundant check that would occur when callins H5S_select_adjust_s() from outside the H5S package.
  Replace H5Sselect_adjust_u() and H5Shyper_adjust_s() with H5Sselect_adjust.  Implement "adjust_s" callback for all selection types.  Add range checking to H5Sselect_adjust().
2019-12-02 08:00:20 -06:00
David Young
0108072f7a Revert "Make a squash commit of 'Quiet some warnings by adjusting warnings level and fixing some code.' (commit 5c911d8baf)" 2019-11-27 11:26:02 -06:00
Allen Byrne
dcae4544a3 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit 'a8892bb42d6f6e4fbc30fae0eb2b957f81c938b9': (45 commits)
  Oops, remove more C99 designated initializers for VS 2010 compatibility.
  Add an #include to get a function declaration.
  Don't use C99 designated initializers, they're not compatible with Visual Studio 2010.
  Quiet some more maybe-uninitialized warnings---each is a false positive, *sigh*.  This is more code that may not compile with VS2010, *sigh sigh*.
  Always warn on maybe-uninitialized.  -Wincompatible-pointer-types was not available until GCC 5, so enable it only if that's the GCC version we're using.
  Only promote maybe-uninitialized warnings to errors on GCC 8.  Even on GCC 8, there may be false positives at low optimization levels?  I need to check.
  Only use -Werror=cast-function-type with GCC 8 and later.
  Put all of the -W options back into the order I found them in so that it's easier to compare old and new config/gnu-flags.
  Add new source files to CMakeLists.txt.
  Mention the -Werror= flags in libhdf5.settings.in.
  free -> HDfree
  Promote decleration-after-statement warnings to errors.
  Quiet decleration-after-statement warnings.
  Move a statement under some declarations since some vintages of Visual Studio don't like declarations after statements.
  Document H5D__chunk_mem_xfree_wrapper().
  Undo accidental test deletion.
  Oops, delete a debug printf that snuck in here.
  Undo my changes to the HD macros, hadn't really intended those to be on this branch....
  Make errors of some more warnings.  Move disabled warnings to DEVELOPER_WARNING_CFLAGS.  Put just one warning option on a line, and sort some of the options.
  Cast to the parameter type, H5VL_token_t *, instead of to unsigned char *.
  ...
2019-11-25 18:21:14 -06:00
Allen Byrne
5fe5caf560 Comment correction 2019-11-21 09:33:04 -06:00
David Young
77a9806ab5 Demote errors to warnings for a couple of unused-but-set variables that
I cannot untangle right now.
2019-11-13 11:26:49 -06:00
David Young
0cb24f8ad4 Mark an unused parameter H5_ATTR_UNUSED. 2019-11-13 11:25:27 -06:00
Allen Byrne
6b927a773c HDFFV-10876 Update h5dump and h5ls for new ref api. 2019-11-07 09:49:11 -06:00
Jerome Soumagne
0beba4aac2 Fix reference type comparison in h5dump 2019-10-08 14:30:24 -05:00
Jerome Soumagne
c13078a0ed Make wrappers, tests and tools use H5Treclaim() instead of H5Dvlen_reclaim() 2019-10-08 14:30:24 -05:00
Allen Byrne
4394f0776b More whitespace changes 2019-10-03 12:10:24 -05:00
Allen Byrne
bc61159318 HDFFV-10919 merge synching 2019-10-02 15:13:37 -05:00
Dana Robinson
a6930a2bcf Renamed get/set_time() calls in the tools library to avoid name
clash when building static parallel HDF5 w/ static linking to OpenMPI.
2019-09-19 13:50:49 -07:00
Allen Byrne
369d17c05c HDFFV-10876 h5dump OPAQUE size should be optional 2019-08-27 15:10:37 -05:00
Dana Robinson
8c40dab59e Untangle #ifdef mess in ROS3 code. 2019-08-19 18:02:47 -07:00
Allen Byrne
64e6665b54 Add HD prefix to tests 2019-08-15 16:46:15 -05:00
Dana Robinson
d95745235a Updated h5trav.c to emit output that doesn't require ddl changes for map
support.
2019-08-13 10:55:34 -07:00
Dana Robinson
5b6bd7c922 Added the map (H5M) API 2019-08-13 01:36:42 -07:00
Larry Knox
8008294578 Squashed commit of the following:
Merge changes from update_merged_S3_HDFS branch into develop.

commit d5034315aea88629929ac0c9c59ebfafd5f21a31
Merge: 9c48823 d3fdcd8
Author: Larry Knox <lrknox@hdfgroup.org>
Date:   Thu Jul 25 08:24:53 2019 -0500

    Merge branch 'develop' into update_merged_S3_HDFS
2019-07-25 11:47:12 -05:00
Quincey Koziol
73df02f13c Merge branch 'develop' into feature/update_gcc_flags 2019-07-09 22:17:22 -05:00
Quincey Koziol
db7c43d375 Updates to warnhist script, along with a few cleanups, and add some comments
to warning cleanups that are a bit obscure.
2019-07-09 22:15:36 -05:00
Allen Byrne
ae0c16d1f2 HDFFV-10581 fix locations for static pdb files 2019-07-08 12:21:11 -05:00
Quincey Koziol
3b594992d6 Add support for GCC9, update warnhist script, and clean up warnings. 2019-07-02 23:43:45 -05:00
Quincey Koziol
d5130bb573 Updated configure & CMake compiler flags for GCC 8.x, along with corresponding
changes to warnhist script (and some extra improvements for condensing C++
and Java warnings), and fixed a bunch of warnings.
2019-06-28 09:10:43 -05:00
Quincey Koziol
1ccbdfee58 Add support for GCC 7.x warnings, update warnhist script to account for them,
clean up warnings.
2019-06-21 10:05:34 -05:00
Allen Byrne
e7f16c6f2c HDFFV-10805 Add option to only build shared targets
HDFFV-10805 Add ONLY_SHARED_LIBS option and prefer shared over static
HDFFV-10803 Update FindSZIP.cmake find module
Remove unneeded modules and update java modules
2019-06-18 07:46:25 -05:00
Binh-Minh Ribler
90d13bef33 Fixed typo
Platforms tested:
    Darwin (osx1010test)
2019-01-07 20:46:55 -06:00
Binh-Minh Ribler
78d0564c2a Refixed HDFFV-10578
Description:
    Applied Neil's fix for this issue after removing previous
    attempt.  The resources are now released in init_objs() when
    failure occurs there.
    Neil will fix HDFFV-10676 separately.
Platforms tested:
    Linux/64 (jelly)
    Linux/64 (platypus)
    Darwin (osx1010test)
2019-01-07 20:36:34 -06:00
Allen Byrne
2c48f6bd00 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '7db3ea76da5d3b5c237a707b09d1618d3206ba83':
  Makes the installed header files the same between the autotools and CMake.
2018-10-29 11:10:27 -05:00
Dana Robinson
62b92ddf40 Makes the installed header files the same between the autotools
and CMake.

* CMake will no longer install private generated headers and tools
  library headers.
* Several empty public header files (which represent internal packages)
  were removed. These were only installed by CMake.
* Autotools installs will install H5FDwindows.h.

Fixes HDFFV-10614.
2018-10-26 20:44:29 -07:00
Allen Byrne
cce1727525 TRILAB-81 check for func success before using value 2018-10-19 14:45:04 -05:00
Allen Byrne
633b7f93ce TRILAB-81 coverity fixes 2018-10-17 10:57:56 -05:00
Allen Byrne
27af9a7922 HD prefix and whitespace 2018-08-28 10:54:54 -05:00
Jordan Henderson
d075c0854d Add quotes to places where MPI_C_LIBRARIES are linked against 2018-07-27 14:58:01 -05:00
Vailin Choi
b178d80be0 Changes made based on feedback from pull request #1039. 2018-05-14 12:26:48 -05:00
Vailin Choi
ea66ac1e67 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit 'dcc66a4f157ace0858b788228550f3e104df3242': (35 commits)
  GGC requires attribute before function
  Correct COMPILE defs usage
  Add missing module_dir property
  Text cleanup
  Correct sentence punctuation.
  Add release note.
  Use set_property for MT flag
  Correct command usage
  Remove APPEND
  Fix typo
  Add missing test lib
  add missing folder to path
  Fix another command revert
  Missed a command revert
  Revert to old style for LINK_FLAGS gen expr not working
  LINK_FLAGS must be separate property sets
  Fix link flags syntax
  Revert refactor link flags
  refactor link flags to interface
  Refactor link flags
  ...
2018-05-14 11:20:03 -05:00
Allen Byrne
2347bffaa2 TRILABS-19 remove add_defintions and use generator expressions 2018-04-26 16:41:04 -05:00
Vailin Choi
e6bc326ec0 Fix for HDFFV-10180 Performance issues with H5Oget_info. 2018-04-24 15:10:13 -05:00
Allen Byrne
6c82c49dd5 TRILABS-20 set a compiler name on all project commands 2018-04-20 10:11:55 -05:00
Allen Byrne
46f2a2a432 TRILABS-19 Initial conversion of include_directories to targets 2018-04-17 15:57:58 -05:00
Allen Byrne
db3d744f25 HDFFV-10444 fix soversion numbers for libraries 2018-04-10 08:55:17 -05:00
Allen Byrne
24c62ba7fe Change CMake min to 3.10 2018-03-09 12:32:06 -06:00
Allen Byrne
b36bad53d9 Inc CMake min, Add new tests, rework test CMake files 2018-02-27 12:57:07 -06:00