Commit Graph

2675 Commits

Author SHA1 Message Date
Allen Byrne
40cdbe0b8d [svn-r29274] HDFFV-9698: fix subsetting issues with h5dump 2016-03-04 15:41:12 -05:00
Allen Byrne
49e774296b [svn-r29262] HDFFV-9241: Print fill value as "DEFAULT" instead of value 0 2016-03-03 11:02:55 -05:00
Allen Byrne
d0444d4f2b [svn-r29261] HDFFV-9241: Print fill value as "DEFAULT" instead of value 0 2016-03-03 10:27:48 -05:00
Allen Byrne
28ee82a07b [svn-r29259] HDFFV-9066: Improve h5dump usage statement for -O F, -ddl=F option. 2016-03-03 09:07:49 -05:00
Allen Byrne
f0a7f5978e [svn-r29257] HDFFV-9705: h5dump should not print filters or allocation time info for VDS files 2016-03-03 08:56:44 -05:00
Allen Byrne
8538eedde3 [svn-r29234] Fix H5 LIB OPTIONS macro for correct ARGN support 2016-02-29 16:24:31 -05:00
Allen Byrne
a1617b7cdb [svn-r29222] HDFFV-9570: Fix segfault when optional args are last option on command line.
Tested: java_merge DT
2016-02-28 12:58:37 -05:00
Allen Byrne
f7689087de [svn-r29186] HDFFV-9654: add VDS options to h5dump
includes new data files
2016-02-23 15:23:46 -05:00
Dana Robinson
7511d8b469 [svn-r29179] Revert of 29177 which breaks the autotools build.
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
           autotools serial
2016-02-22 15:32:01 -05:00
Allen Byrne
910d420409 [svn-r29177] HDFFV-9654: add VDS options to h5dump 2016-02-22 11:57:07 -05:00
Mohamad Chaarawi
63c90e5c67 [svn-r29081] - merge in the phdf5_metadata_opt/ branch with the collective metadata optimizations.
- rename H5AC_dxpl_id to H5AC_ind_read_dxpl_id and update all usage in the library

tested on bb-8 with parallel and serial.
2016-02-10 15:48:34 -05:00
Mohamad Chaarawi
48bebcc39e [svn-r29057] added dxpl type checking when debug mode is enabled (H5_DEBUG_BUILD)
tested on bb-8 with Serial and Parallel, debug and production builds.
2016-02-07 10:37:33 -05:00
Quincey Koziol
b9763eee6d [svn-r28918] Description:
I missed changes to a couple of expected error output files with the last
checkin.

Tested on:
    MacOSX/64 10.11.2 (amazon) w/serial & parallel
    (h5committest forthcoming)
2016-01-15 18:28:08 -05:00
Allen Byrne
94d03fd874 [svn-r28885] Change TOOLTEST5 to TOOLTEST3, which does not post-process the files. 2016-01-13 12:24:20 -05:00
Allen Byrne
0115366eee [svn-r28868] HDFFV-9639: autotools script update 2016-01-12 15:48:23 -05:00
Allen Byrne
24443da316 [svn-r28865] HDFFV-9639: Fix double-free error by setting freed var to NULL.
Verified issue with "h5dump tgroup.h5 non_existing.h5"
Applied patch and retested.
2016-01-12 15:31:59 -05:00
Quincey Koziol
d4f3d93b8d [svn-r28769] Description:
More memory cleanups and leak elimination.

Tested on:
    MacOSX/64 10.11.2 (amazon) w/serial & parallel
    (h5committest forthcoming)
2016-01-02 20:03:08 -05:00
Quincey Koziol
f60170dac7 [svn-r28761] Description:
Clean up many mismatches between malloc/free and H5MM_malloc/H5MM_xfree
in the library and tests (and use of H5free_memory and H5Dvlen_reclaim).  Also
make H5Ocopy use a private version of H5Lexists, which doesn't internally
throw (and suppress) errors when an object (or the path to it) isn't found in
the destination.

Tested on:
    MacOSX/64 10.11.2 (amazon) w/serial & parallel
    (h5committest forthcoming)
2016-01-01 01:28:04 -05:00
Quincey Koziol
b5504be6cc [svn-r28742] Description:
Add 'update' operation to v2 B-trees, which will insert a new record, or
modify an existing one, depending on if the record exists or not.

Tested on:
    MacOSX/64 10.11.2 (amazon) w/serial & parallel
    (h5committest forthcoming)
2015-12-29 12:06:36 -05:00
Dana Robinson
0a00732c4d [svn-r28696] Minor normalization with revise_chunks.
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
           serial only
2015-12-17 01:31:27 -05:00
Larry Knox
b3426914a8 [svn-r28669] Changes to correct errors found with -ansi flag.
h5tools_dump.c
    Removed 3 lines commented out with //.
h5_vds-percival-unlim.c
    Changed C++-style comment to C-style comment.

Tested with h5committest.new.
2015-12-15 15:52:12 -05:00
Dana Robinson
aa4fc58ac9 [svn-r28599] Normalization of tools with revise_chunks.
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
           serial only, autotools and CMake (3.3.2)
2015-12-11 14:14:43 -05:00
Allen Byrne
71ee2155d4 [svn-r28377] CMake 3.4 policy change 2015-11-17 10:07:49 -05:00
Allen Byrne
3edabec156 [svn-r28176] HDFFV-9550: Add VS2015 fix for change of standard format. 2015-10-21 16:36:36 -05:00
Jerome Soumagne
2094d86461 [svn-r28138] Add first support for _Bool and make hbool_t a "real" _Bool if available
Fix tests accordingly and fix misuse of hbool_t in various places

Fix initialization of H5Pgcpl/ocpl structs in property decoding routines

Tested on:
    Linux/32 (jam)
    Linux/64 (platypus)
    Linux/PPC64 (ostrich)
    MacOSX/64 10.11
2015-10-20 01:28:17 -05:00
Larry Knox
d72281dff4 [svn-r28115] Replace unreadable, unused test file with newly generated file that can be read by h5dump from HDF5 1.6.10, 1.8.6, 1.8.16 and trunk. 2015-10-16 17:11:26 -05:00
Quincey Koziol
cd49e8a2ab [svn-r28025] Description:
Switch 'int' flag variables to booleans.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & paralel
    (too minor for h5committest)
2015-10-10 21:42:20 -05:00
Quincey Koziol
d3c6b4ad72 [svn-r27848] Description:
Clean up warnings and some normalization against trunk.

Tested:
    McaOSX/64 10.10.5 (amazon) w/serial & parallel
    (h5committest not required on this branch)
2015-09-21 19:21:18 -05:00
Dana Robinson
209df7c3b0 [svn-r27839] Removed generated autotools stragglers missed in trunk sync. 2015-09-21 03:36:01 -05:00
Quincey Koziol
0695d6366a [svn-r27835] Description:
Sync w/trunk.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    (h5committest not required on this branch)
2015-09-20 21:18:45 -05:00
Dana Robinson
944e42d5ea [svn-r27818] Minor warning fixes.
Tested on: h5committest
2015-09-17 12:21:34 -05:00
Dana Robinson
d90e4acfa7 [svn-r27801] Minor warning fixes in the tools.
Tested on: jam (too minor for h5committest)
2015-09-16 10:23:16 -05:00
Dana Robinson
9af344117c [svn-r27794] Reintegration merge of features/autotools_rework branch with trunk
NOTES:

- Developers will have to run autogen.sh before building with the autotools.

- autogen.sh takes the -p option to mimic the old bin/reconfigure behavior.

- The generated error, overflow and version headers have been left in place.

- The generated H5LT parser code has also been left in place.

- There are no changes for CMake users at this time.

Tested on: h5committest
2015-09-15 15:38:57 -05:00
Quincey Koziol
1023374492 [svn-r27768] Description:
Complete revamp of package initialization/shutdown mechanism in the library.
Each package now has a single init/term routine.

    This new way should avoid packages being re-initialized during library
shutdown and is also be _much_ more proactive about giving feedback for
resource leaks internal to the library.

    Introduces a new "module" header file for packages in the library
(e.g src/H5Fmodule.h) which sets up some necessary package configuration macros
for the FUNC_ENTER/LEAVE macros.  (The VFL drivers have their own slightly
modified version of this header, src/H5FDdrvr_module.h)

    Also cleaned up a bunch of resources leaks all across the library and tests,
along with addressing many warnings, as I encountered them.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    Linux/64 3.10.x (kituo) w/serial & parallel
    Linux/64 2.6.x (ostrich) w/serial
2015-09-13 22:58:59 -05:00
Dana Robinson
122bf84bb3 [svn-r27760] Brought r27631-27755 over from the trunk.
tested on: jam
2015-09-11 09:08:04 -05:00
Allen Byrne
10da31a926 [svn-r27745] Merge trunk revision 27744 2015-09-10 09:11:17 -05:00
Allen Byrne
e5dbc90ad2 [svn-r27656] HDFFV-9515: repack failed with 5 digit filter ids because a local variable in the parse routine was not large enough.
Tested: local linux and windows
2015-09-01 13:35:16 -05:00
Neil Fortner
c839ed3383 [svn-r27646] Add version number to VDS global heap object encoding.
Fix handling of layout version number.
Other minor fixes/cleanup.
NOTE: This commit changes the file format for VDS, all files must be
re-generated.

Tested: ummon
2015-09-01 08:03:33 -05:00
Dana Robinson
59aa015d9f [svn-r27638] Merged r27500-27631 from trunk. 2015-08-31 23:36:17 -05:00
Quincey Koziol
db8e289abe [svn-r27632] Description:
Revert changes to pass file pointer to selection serialize/deserialize
routines.  Also patch back in some changes that were merged out in the
previous merge w/trunk.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial
    (h5committest not required on this branch)
2015-08-31 16:58:15 -05:00
Quincey Koziol
2c91cbecc6 [svn-r27630] Description:
Bring in changes from the trunk, through r27628.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial
    (h5committest not required on this branch)
2015-08-31 15:14:57 -05:00
Dana Robinson
c226e58005 [svn-r27626] Various minor warning fixes before major SWMR and VDS merges.
gcc 4.9.2 was used to create the warning list

- implicit casts
- shadowed variables
- various enum issues
- other minor fixes (comments, unused macros, etc.)

Tested on: h5committest
2015-08-31 14:04:23 -05:00
Scot Breitenfeld
e6f9fc5f7f [svn-r27625] Added preprocessor commands for PGI compiler.
tested: h5committest
2015-08-31 13:49:17 -05:00
Quincey Koziol
b68b9d8786 [svn-r27612] Description:
Align w/vds branch: Whitespace cleanup, move common code for opening a
dataset into a new routine, misc. style cleanups.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    (h5committest upcoming)
2015-08-28 20:43:37 -05:00
Dana Robinson
05bf2c042c [svn-r27599] Ran bin/reconfigure
tested on: jam
2015-08-27 16:56:25 -05:00
Neil Fortner
c365b9a59f [svn-r27593] Merge revisions 27453 through 27592 from trunk to vds branch.
Tested: ummon
2015-08-27 12:06:54 -05:00
Dana Robinson
2e6100fb23 [svn-r27572] Removed VMS-specific code from the library.
The only remaining code consists of a few floating-point tests
that rely on pre-generated and checked-in VMS files. These have
been left alone, even though they will not be possible to
recreate, since testing VMS float behavior is still important.

Tested on: h5committest
2015-08-24 15:19:39 -05:00
Quincey Koziol
de324a50f8 [svn-r27549] Description:
Update the file format debugging routines to match the recent changes to
the metadata cache, along with a few other cleanups and miscellaneous
enhancements.

Tested on:
    MacOSX/64 10.10.5 (amazon)
    (h5committest forthcoming)
2015-08-21 22:08:43 -05:00
Jerome Soumagne
ab7d724ffd [svn-r27548] Revert r27545 2015-08-21 17:44:22 -05:00
Jerome Soumagne
7ce2d52cf6 [svn-r27545] Add first support for _Bool and make hbool_t a "real" _Bool if available
Fix tests accordingly
2015-08-21 13:52:30 -05:00