Commit Graph

864 Commits

Author SHA1 Message Date
Pedro Vicente Nunes
a6e2a45d15 [svn-r15699] Bug fix #1281
The TEXTFPE was described in the usage (read floats in scientific notation) but was not implemeneted.
Solution:
remove TEXTFPE from the help system and have the TEXTFPE input type do
the same thing as TEXTPF currently does to support backwards compatibility (the format read for both TEXTFPE and TEXTPF is %f)
added a test

tested: windows, linux
2008-09-25 15:38:21 -05:00
Quincey Koziol
00bd6ae9c2 [svn-r15674] Description:
Add base support for extensible array "data blocks" to code, tests and
h5debug.

Tested on:
        Mac OS X/32 10.5.4 (amazon) in debug mode
        Mac OS X/32 10.5.4 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
2008-09-22 10:22:03 -05:00
Neil Fortner
6d28e06f30 [svn-r15668] Purpose: Add feature requested in bug #1282
Description: Adds capability to h5ls to traverse external links when the -r
(recursive) option is given.  Changes to the way absolute path names are patched
in h5trav.c.  Changes to the way recursive traversal starting from a non-root
group is handled (which also fixes some preexisting issues).  Tests added for
these cases.

Tested: kagiso, smirom, linew (h5committest)
2008-09-21 13:35:43 -05:00
Quincey Koziol
5fb061e46e [svn-r15617] Description:
Clean up how v2 B-tree (and extensible array) classes are determined in
h5debug.

	Add support for extensible array headers and index blocks to h5debug

Tested on:
        Mac OS X/32 10.5.4 (amazon) in debug mode
        Mac OS X/32 10.5.4 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
2008-09-11 15:16:05 -05:00
Quincey Koziol
f1d22675ff [svn-r15614] Description:
More extensible array features: add support for setting/getting
elements in the array's index block.

Tested on:
        Mac OS X/32 10.5.4 (amazon) in debug mode
        Mac OS X/32 10.5.4 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
2008-09-11 09:03:23 -05:00
Scot Breitenfeld
0423d629ce [svn-r15601] Description:
Added windows fortran DLL function file, hdf5_fortrandll.def
2008-09-08 10:48:41 -05:00
Scott Wegner
779b0a7dfb [svn-r15584] Purpose: Add new extensible array source code and test project for Windows
Description:
In revision 15549, new source code was added for the extensible array interface.  This checkin adds the source code to Windows, along with the new test project, earray.

Note: The new H5EA interface causes compilation errors on Windows, and will need to be fixed in the source.
2008-09-03 10:09:10 -05:00
Christian Chilan
e9256348ab [svn-r15582] Added script to build h5perf_serial in standalone mode.
Tested on kagiso, smirom, and linew.
2008-09-02 16:22:51 -05:00
Scot Breitenfeld
709654724b [svn-r15576] Decription:
Added the file:

 ./fortran/src/H5test_kind_SIZEOF.f90
2008-09-02 09:16:56 -05:00
Quincey Koziol
aa03e8bc94 [svn-r15549] Description:
Initial checkin of extensible array data structure prototype code and
regression tests.

	Initial definitions for revised FUNC_ENTER/LEAVE and error reporting
macros, which are being vetted in the extensible array code.

	Minor warning and formatting cleanups in other sections of code.

Tested on:
        Mac OS X/32 10.5.4 (amazon) in debug mode
        Mac OS X/32 10.5.4 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
2008-08-28 09:57:13 -05:00
Scot Breitenfeld
aa85cb74cc [svn-r15535] Description:
Added files:
./fortran/src/H5_DBLE_InterfaceInclude.f90
./fortran/src/H5_DBLE_InterfaceExclude.f90

Contains the DOUBLE PRECSION interfaces depending on
the state of FORTRAN_DEFAULT_REALisDBLE_F.
2008-08-26 11:08:43 -05:00
Scott Wegner
e37c76af2b [svn-r15504] Purpose: Update MANIFEST
Description:
Add new Windows project files to MANIFEST

Tested:
none
2008-08-21 11:48:07 -05:00
Neil Fortner
a59d91d192 [svn-r15485] Purpose: Allow library to shut down properly when objects have reference count
> 1.

Description: Added a new field 'app_count' to H5I_id_info_t struct, to track
    the reference count on an id due to the application.  the old 'count' field
    tracks the total.  Generally any id visible to the application gets placed
    in app_count.  Added app_ref boolean parameter to H5I_inc_ref, H5I_dec_ref,
    H5I_register, H5I_clear_type, and a few other functions, to specify whether
    the operation(s) being performed on the id(s) are due to the application
    (TRUE) or not (FALSE).  Test added for this case.

Tested: kagiso, smirom, linew (h5committest)
2008-08-19 11:35:16 -05:00
Pedro Vicente Nunes
f6c102825e [svn-r15465] remove h52jpeg 2008-08-12 09:47:04 -05:00
Pedro Vicente Nunes
5eb94a3eb5 [svn-r15429] new test for h5diff 2008-08-04 16:43:43 -05:00
Pedro Vicente Nunes
44be564ca4 [svn-r15316] added one more palette to the test generator file
tested: windows, linux
2008-07-03 14:10:56 -05:00
Pedro Vicente Nunes
89bb6df86e [svn-r15314] moved h5jam test files to tools/h5jam/testfiles
tested: linux
2008-07-03 08:32:39 -05:00
Pedro Vicente Nunes
0e1432a18f [svn-r15307] moved testfiles from hl/tools/testfiles to hl/tools/gif2h5/testfiles
tested: linux
2008-07-02 08:54:35 -05:00
Pedro Vicente Nunes
cb7a01f5ce [svn-r15292] moved h52jpeg to /hl/tools/h52jpeg
tested: linux
2008-06-28 16:06:35 -05:00
Pedro Vicente Nunes
6429a086cf [svn-r15260] new location for h5copy files 2008-06-23 09:21:29 -05:00
Pedro Vicente Nunes
fee6ae24aa [svn-r15248] new location for h5repack files 2008-06-20 09:24:04 -05:00
Pedro Vicente Nunes
096b0127bc [svn-r15246] Changed the shell script to avoid doing a cd $srcdir
The name of the files are now given by its full name relative to $srcdir

To avoid the printing of the complete full path of the test file, that hides
all the other parameters for long paths, the printing of the command line 
is done first in TESTING with the name only of the test file, not its full path 

the printing in the expected output that had the file name was removed as well as 3 tests that tested error messages in which the file name was present

tested: linux (in 2 different build directories relative to $srcdir), solaris
2008-06-19 21:05:11 -05:00
Pedro Vicente Nunes
83ddc834f4 [svn-r15238]
Moved all h5diff testfiles from /tools/testfiles to tools/h5diff/testfiles

Tested: linux, solaris
2008-06-19 10:34:12 -05:00
Pedro Vicente Nunes
3fd9711f62 [svn-r15223] new testfile location for h52jpeg 2008-06-16 21:03:23 -05:00
Pedro Vicente Nunes
e5f8c52f06 [svn-r15220] new files for h52jpeg 2008-06-16 15:32:48 -05:00
Pedro Vicente Nunes
8d914f5a3e [svn-r15218] new test files for h52jpeg 2008-06-16 10:13:10 -05:00
Pedro Vicente Nunes
5bd3d3a501 [svn-r15186] new entry for h52jpeg Makefiles 2008-06-10 08:24:53 -05:00
Scott Wegner
abc065ad15 [svn-r15154] Purpose: Rename new source file from win32defs.h to H5win32defs.h.
Description:
To follow the naming convention for source files, we simply rename the new header to H5win32defs.h

Tested:
None, simple name change.
2008-06-05 15:02:27 -05:00
Scott Wegner
532e23b808 [svn-r15150] Purpose: Separate Windows function macro definitions to win32defs.h
Description:
In library code, we try not to use system calls directly, but instead use the HD{function} macro instead.  This way, we can map special versions of the call on particular systems.  Previously, it was all done in H5private.h.  However, in an effort to clean up platform-specific definitions, we move all of the Windows macros into a separate file, win32defs.h.  This way, we can use the non-Posix versions that Visual Studio sends warnings about.

Some macros are set specifically in the platform-specific header files.  Then, any macros left unset will be set by the "default" implementation in H5private.h.

This checkin also cleans up various source files to use the HD* macros when possible.

Tested:
VS2005 on WinXP
VS.NET on WinXP
h5committest (kagiso, linew, smirom)
2008-06-05 13:52:19 -05:00
Quincey Koziol
b75540244f [svn-r15133] Description:
Fixed bug in h5ls that prevented relative group listings (like
"h5ls foo.h5/bar") from working correctly.

Tested on:
        FreeBSD/32 6.2 (duty) in debug mode
        FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Mac OS X/32 10.5.3 (amazon) in debug mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2008-06-03 19:17:27 -05:00
Albert Cheng
d36f67c0e2 [svn-r15130] Updated with the added file ./tools/testfiles/h5diff_empty.h5. 2008-06-03 01:03:46 -05:00
Scott Wegner
cfb75e1f7f [svn-r15126] Purpose: Cleanup unneeded Windows source
Description:
Previously, we maintained some source files that are commonly generated dynamically on other systems.  Now, we also generate them on Windows as well.  We should remove them from the repository so old versions are not accidentally used.

Also, clean up the project files to organize generator programs.

Tested:
VS2005 on WinXP
VS2005 on WinXP x64
VS.NET on WinXP
2008-06-02 15:28:18 -05:00
Pedro Vicente Nunes
9178314ee9 [svn-r15117] added repo entries for the h52jpeg test generator program 2008-06-02 10:29:35 -05:00
Pedro Vicente Nunes
93eb1b8972 [svn-r15103] added h52jpeg 2008-05-30 10:49:01 -05:00
Scott Wegner
2fd80deb4d [svn-r14975] Purpose: Add Windows fixes for new Fortran code.
Description:
There were a number of small tweaks we needed to make to add the new fortran_1_8 code on Windows.  We create new project files, add new source to them, add the test to our test suite, and fix a few typos in the Windows-specific source code.

Tested:
VS2005 on WinXP
2008-05-12 13:14:12 -05:00
Pedro Vicente Nunes
db1c4549a6 [svn-r14936] add 2 new files for the h5dump user defined floting point format 2008-05-06 08:46:58 -05:00
Elena Pourmal
dcad778b42 [svn-r14923] Maintenance: This check-in merges changes from the fortran_1_8 branch back into the trunk (up to revision 14921)
Platforms tested: kagiso with g95 and Intel compilers; more testing will be done after checking in a fresh
                  copy from the trunk. New code itself was tested with all Fortran compilers available at THG
2008-05-03 18:39:37 -05:00
Scot Breitenfeld
aec106e324 [svn-r14903] Undoing change committed in r14902. 2008-04-30 14:51:13 -05:00
Scot Breitenfeld
5773fd34bc [svn-r14902] Merged fortran_1_8 branch changes r14505:14901 into the trunk. New fortran wrappers added. 2008-04-30 14:23:26 -05:00
Quincey Koziol
495ca9c7bb [svn-r14860] Description:
Omnibus raw data I/O revisions, with wide-ranging changes and
refactoring, in order to prepare for implementing "fast append" feature.

	These changes remove the majority of the code duplication for raw data
I/O which has crept in over the last ten years and introduces a more object-
oriented design for operating on different types of dataset storage.

	Chunked storage no longer has it's own I/O routines, it is now handled
as either contiguous (if chunk is not pulled into the cache) or compact (if the
chunk is cached in memory).

	No bug or feature changes, at least intentionally... :-)

Tested on:
        FreeBSD/32 6.2 (duty) in debug mode
        FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Mac OS X/32 10.5.2 (amazon) in debug mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2008-04-24 10:03:41 -05:00
Scott Wegner
775bbddc28 [svn-r14854] Purpose: Remove many spurious compiler warnings in Visual Studio
Description:
On Windows, many POSIX functions have been replaced by a similarly-named function with some additional security-checking.  Visual Studio issues a warning each time the POSIX version is used, recommending that we replace it with the new version.  This results in thousands of errors when building the HDF5 library.

This checkin adds a Visual Studio "Property Sheet", which has been applied to all library projects, and defines a number of preprocessors to suppress these warnings.  The warnings have been disabled only in Visual Studio 2005 project files, as VS.NET doesn't support property sheets.

Tested:
VS2005 on WinXP
2008-04-21 09:03:59 -05:00
Scott Wegner
58b37f0a88 [svn-r14846] Purpose: Update MANIFEST for last commit
Description:
Add ./windows/hdf5build_examples.BAT to MANIFEST

Tested:
chkmanifest on kagiso
2008-04-14 16:37:34 -05:00
Scott Wegner
0c299e6240 [svn-r14838] Purpose: Remove ohdr_gentst from Windows projects
Description:
The ohdr_gentst project exists in order to re-create test input files that are distributed with the source.  These projects aren't built by default on most platforms, and the source isn't distributed in release builds.  To avoid confusion and bloat, we remove the Windows version of this project.

Tested:
None, only removed
2008-04-14 10:21:46 -05:00
Christian Chilan
d3e9a4cb40 [svn-r14828] Included files of the serial benchmarking tool. 2008-04-11 16:24:11 -05:00
Scott Wegner
9e1746c22b [svn-r14819] Purpose: Update MANIFEST for previous checkin
Tested:
chkmanifest on smirom
2008-04-08 14:23:43 -05:00
Pedro Vicente Nunes
fe445ca865 [svn-r14807] add an entry to a new file /test/chunk_info.c 2008-04-07 14:01:40 -05:00
Binh-Minh Ribler
a884d556b7 [svn-r14677] Purpose: Update MANIFEST
Description:
    Removed ./c++/examples/testexamples.sh

Platforms tested:
    Not needed.
2008-02-25 20:32:30 -05:00
Pedro Vicente Nunes
fed50159f3 [svn-r14614] add/remove previous files 2008-02-19 14:16:30 -05:00
Scott Wegner
1755138539 [svn-r14608] Purpose: Add missing Windows HL C examples
Description:
The Windows suite of examples for HL C was a very small subset of the examples that exist for other platforms.  Now we have all of the HL C examples-- integrated into the VS projects files, and batch test scripts.

Tested:
VS2005 on WinXP
VNET on WinXP
2008-02-19 10:25:23 -05:00
Scott Wegner
a937d785c0 [svn-r14605] Purpose: Rename Windows HL Example projects to match other platforms
Description:
The collection of HL C examples that we distribute for Windows is incomplete.  I wasn't aware of it until Pedro pointed it out, because we use different (although similar) names for the generated files.  This checkin changes the naming to follow Linux, in preparation to add the rest of the HL examples to Windows.

Note: I believe I've updated the MANIFEST accordingly, but I may have missed something-- I'll check on Linux shortly after this commit.

Tested:
VS2005 on WinXP
VS.NET on WinXP
2008-02-18 13:51:47 -05:00