5136 Commits

Author SHA1 Message Date
Quincey Koziol
6f1dda474c [svn-r27887] Description:
Merge changes from trunk to the branch.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    (h5committest not required on this branch)
2015-09-26 20:39:06 -05:00
Quincey Koziol
574ff3980a [svn-r27885] Description:
Check if the layout has been retrieved before setting it again.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    (h5committest not required on this branch)
2015-09-26 20:28:39 -05:00
Quincey Koziol
8186a5cee1 [svn-r27884] Description:
Update dataspace selection encode/decode routines to avoid type aliasing
errors.

Tested on:
    Linux/64 2.6.x (platypus) w/production
    (h5committest forthcoming)
2015-09-26 18:52:42 -05:00
Neil Fortner
dbdc9c1e2b [svn-r27879] Move property list shutdown earlier in H5_term_library, since with VDS layout it
needs to call into the H5D package.

Tested: ummon
2015-09-25 16:48:11 -05:00
Quincey Koziol
10837a2a28 [svn-r27876] Description:
Make virtual layout return to the property list occur in all cases, even
on failure.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    (h5committest not needed on this branch)
2015-09-25 11:29:02 -05:00
Allen Byrne
d99143e25b [svn-r27868] Add missing exported headers due to generation changes. 2015-09-24 12:14:01 -05:00
Quincey Koziol
718b311c11 [svn-r27860] Description:
Sync w/changes on trunk

Tested on:
    Not necessary, text only...
2015-09-23 10:40:48 -05:00
Allen Byrne
342ab3ccbf [svn-r27858] Add depends for H5E files 2015-09-22 15:01:39 -05:00
Quincey Koziol
af25c747ad [svn-r27851] Description:
Normalization changes that wouldn't otherwise be necessary if the VDS branch
wasn't coming in shortly.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    (h5committest forthcoming)
2015-09-21 21:11:54 -05:00
Quincey Koziol
4ad84456b3 [svn-r27850] Description:
Sync w/trunk

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial
    (h5committest not required on this branch)
2015-09-21 19:35:47 -05:00
Quincey Koziol
fb238c24a5 [svn-r27849] Description:
Normalize against incoming changes on VDS branch.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial
    (h5committest forthcoming)
2015-09-21 19:26:51 -05:00
Quincey Koziol
d3c6b4ad72 [svn-r27848] Description:
Clean up warnings and some normalization against trunk.

Tested:
    McaOSX/64 10.10.5 (amazon) w/serial & parallel
    (h5committest not required on this branch)
2015-09-21 19:21:18 -05:00
Allen Byrne
9edd184ae9 [svn-r27846] Fix generated files process.
Add script for post processing of flex/bison files.
2015-09-21 15:05:23 -05:00
Dana Robinson
209df7c3b0 [svn-r27839] Removed generated autotools stragglers missed in trunk sync. 2015-09-21 03:36:01 -05:00
Quincey Koziol
0695d6366a [svn-r27835] Description:
Sync w/trunk.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    (h5committest not required on this branch)
2015-09-20 21:18:45 -05:00
Quincey Koziol
8fc9a9ba25 [svn-r27834] Description:
Close FAPL for external link test, to fix infinite loop closing the library.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial 
    (too minor to require h5committest)
2015-09-20 21:08:56 -05:00
Dana Robinson
132ab9c2f3 [svn-r27828] Removed Perl-generated header files and H5LT parse code created by flex/bison.
Tested on: jam
2015-09-18 15:46:04 -05:00
Dana Robinson
944e42d5ea [svn-r27818] Minor warning fixes.
Tested on: h5committest
2015-09-17 12:21:34 -05:00
Allen Byrne
2ddf84b036 [svn-r27817] Fix generated file dependencies 2015-09-17 11:07:09 -05:00
Dana Robinson
a8bd6fa91e [svn-r27812] Updated the autotools files to only compile direct VFD and parallel code
when those options were specified in the configure step.

Tested on: jam w/ serial, parallel, and direct VFD
2015-09-16 18:40:11 -05:00
Quincey Koziol
ee7612be44 [svn-r27811] Description:
Refactor property list code to "deep copy" properties in the correct way,
retraining the rest of the library to copy & release things correctly.  This
cleans up another batch of memory leaks, etc. within the library.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    Linux/32 2.6.x (jam) w/serial & parallel
    (h5committest forthcoming)
2015-09-16 17:27:49 -05:00
Dana Robinson
78848c63b7 [svn-r27809] Minor warning fixes in the library.
Tested on: jam (too minor for h5committest)
2015-09-16 16:52:54 -05:00
Neil Fortner
d23cc2da70 [svn-r27806] Fix property list serialization for values encoded by H5Pset_chunk_cache to be
compatible between 32 and 64 bit systems.
Expand cross platform property list encode/decode testing.
Fix warning in H5P__fill_value_enc.

Tested: jam, koala, ostrich (h5committest), ummon
2015-09-16 14:55:38 -05:00
Quincey Koziol
52ac462e7c [svn-r27805] Description:
Shut warnings from purify up.

Tested on:
    Linux/32 2.6 (jam) w/purify
    (Too minor to require h5committest)
2015-09-16 12:23:47 -05:00
Allen Byrne
36869656f5 [svn-r27803] Synch header generation to autogen and create files in source folder.
Tested : Windows which had issues creating the files in both source and build (by-product of perl script).
2015-09-16 11:44:04 -05:00
Dana Robinson
058ec37559 [svn-r27795] Removed some autotools generated files that were not caught by
the last checkin.

Tested on: bin/chkmanifest
2015-09-15 15:52:14 -05:00
Dana Robinson
9af344117c [svn-r27794] Reintegration merge of features/autotools_rework branch with trunk
NOTES:

- Developers will have to run autogen.sh before building with the autotools.

- autogen.sh takes the -p option to mimic the old bin/reconfigure behavior.

- The generated error, overflow and version headers have been left in place.

- The generated H5LT parser code has also been left in place.

- There are no changes for CMake users at this time.

Tested on: h5committest
2015-09-15 15:38:57 -05:00
Dana Robinson
ef8c73ecc3 [svn-r27789] Merge of r27683-r27698 from the trunk.
Tested on: h5committest
2015-09-15 08:33:49 -05:00
Quincey Koziol
050dd02387 [svn-r27771] Description:
Merge in part of Neil's property list fixes:  Fix a minor memory leak,
add some sanity checks, clean up the code a little, and verify that encoding/
decoding default versions of the property lists works correctly.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial
    (Too minor to require h5committest)
2015-09-14 11:21:31 -05:00
Quincey Koziol
1023374492 [svn-r27768] Description:
Complete revamp of package initialization/shutdown mechanism in the library.
Each package now has a single init/term routine.

    This new way should avoid packages being re-initialized during library
shutdown and is also be _much_ more proactive about giving feedback for
resource leaks internal to the library.

    Introduces a new "module" header file for packages in the library
(e.g src/H5Fmodule.h) which sets up some necessary package configuration macros
for the FUNC_ENTER/LEAVE macros.  (The VFL drivers have their own slightly
modified version of this header, src/H5FDdrvr_module.h)

    Also cleaned up a bunch of resources leaks all across the library and tests,
along with addressing many warnings, as I encountered them.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    Linux/64 3.10.x (kituo) w/serial & parallel
    Linux/64 2.6.x (ostrich) w/serial
2015-09-13 22:58:59 -05:00
HDF Tester
f16361d5f1 [svn-r27767] Snapshot version 1.9 release 231 2015-09-13 19:43:47 -05:00
Dana Robinson
122bf84bb3 [svn-r27760] Brought r27631-27755 over from the trunk.
tested on: jam
2015-09-11 09:08:04 -05:00
Dana Robinson
54d0a36947 [svn-r27753] Removed duplicated attribute macro checks. Moved canonical attribute
macro checks from src/H5api_adapt.h to H5private.h, which is where
they belong anyway.

Tested on: h5committest (manually inspected for attribute warnings)
2015-09-10 15:39:44 -05:00
Allen Byrne
531eb2b050 [svn-r27726] Added output folder to commands 2015-09-09 15:09:58 -05:00
Allen Byrne
e040db8331 [svn-r27725] Add initial commands to properly build the generated files.
Added HDF5_GENERATE_HEADERS ON to cacheinit.cmake file.

Tested: local linux
2015-09-09 14:36:47 -05:00
Quincey Koziol
26baf1a805 [svn-r27710] Description:
Bring the "metadata rings" code from its branch (mdc_rings_v2) to the trunk.
(This change will support the page buffering feature)

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    (h5committest forthcoming)
2015-09-09 01:33:03 -05:00
Quincey Koziol
2132f54459 [svn-r27707] Description:
Misc. minor cleanups in preparation for merging "metadata rings" branch to
trunk.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial
    (Too minor to require h5committest)
2015-09-09 00:26:45 -05:00
Neil Fortner
f3da956441 [svn-r27701] RM offset initialization that is no longer necessary with the recent fix to
H5Screate().

Tested: ummon
2015-09-08 15:41:38 -05:00
Dana Robinson
fadb57f704 [svn-r27699] Removed some configure checks for obsolete Unix variants.
The H5pubconf.h.in file that CMake uses was also updated.

Tested on: h5committest
2015-09-08 15:03:41 -05:00
HDF Tester
34be1d1aed [svn-r27690] Snapshot version 1.9 release 230 2015-09-06 19:31:40 -05:00
Dana Robinson
bea85e0705 [svn-r27675] Removed library checks for nsl and socket from the autotools configure on
Solaris.

The nsl and socket libraries are no longer used by the library. Fixes
HDFFV-9118.

Tested on: h5committest (CMake fortran fails due to an unrelated error)
           jam w/ CMake
2015-09-04 03:20:26 -05:00
Neil Fortner
dceb3f1818 [svn-r27673] rm unnecessary/unreachable code from H5S_get_select_hyper_nblocks
Tested: ummon
2015-09-03 16:27:58 -05:00
Neil Fortner
c839ed3383 [svn-r27646] Add version number to VDS global heap object encoding.
Fix handling of layout version number.
Other minor fixes/cleanup.
NOTE: This commit changes the file format for VDS, all files must be
re-generated.

Tested: ummon
2015-09-01 08:03:33 -05:00
Dana Robinson
59aa015d9f [svn-r27638] Merged r27500-27631 from trunk. 2015-08-31 23:36:17 -05:00
Quincey Koziol
db8e289abe [svn-r27632] Description:
Revert changes to pass file pointer to selection serialize/deserialize
routines.  Also patch back in some changes that were merged out in the
previous merge w/trunk.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial
    (h5committest not required on this branch)
2015-08-31 16:58:15 -05:00
Quincey Koziol
a90e09889d [svn-r27631] Description:
Make error values from hyperslab operations clearer.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    (Too minor to require h5committest)
2015-08-31 16:43:02 -05:00
Quincey Koziol
2c91cbecc6 [svn-r27630] Description:
Bring in changes from the trunk, through r27628.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial
    (h5committest not required on this branch)
2015-08-31 15:14:57 -05:00
Dana Robinson
c226e58005 [svn-r27626] Various minor warning fixes before major SWMR and VDS merges.
gcc 4.9.2 was used to create the warning list

- implicit casts
- shadowed variables
- various enum issues
- other minor fixes (comments, unused macros, etc.)

Tested on: h5committest
2015-08-31 14:04:23 -05:00
Scot Breitenfeld
e6f9fc5f7f [svn-r27625] Added preprocessor commands for PGI compiler.
tested: h5committest
2015-08-31 13:49:17 -05:00
Dana Robinson
b920ee876e [svn-r27623] Added some parallel #ifdefs to H5Ocache.c to quiet compiler
warnings.

tested on: h5committest
2015-08-31 12:42:09 -05:00