Commit Graph

576 Commits

Author SHA1 Message Date
Larry Knox
3032f3adf3 [svn-r26711] Recommitting revisions 26669 and 26670, removing VPATH and redundant /usr/include and lib in fcompile and link flags checks, now that I have run reconfigure.
Also changed paths to h5cc, etc. in scripts to run installed examples from relative paths to absolute paths.

Tested with h5committest.
2015-04-02 16:07:53 -05:00
Allen Byrne
45577d5693 [svn-r26660] HDFFV-9131: autotols rework
Remove CXX_CONDITIONAL
remove unneeded/obsolete sections.

h5commtitest
2015-03-30 13:55:21 -05:00
Allen Byrne
451a91e53b [svn-r26594] Merge macros and fortran changes from dual_binary feature.
Tested: local linux
2015-03-25 17:08:46 -05:00
Jerome Soumagne
1cd7c16a9d [svn-r26509] Run reconfigure after merges from autotools_rework branch. 2015-03-20 14:15:51 -05:00
Dana Robinson
7462a7ef1c [svn-r26329] Merge of r26069, r26070, and r26072 from the features/autotools_rework
branch.

Removed the configure option that allows selective disabling of individual
internal filters (fletcher32, shuffle, etc.).

This feature mucked up the code with a lot of #ifdefs, saved very little space,
and was not scalable to a general scheme for library size reduction. We've
decided to remove the feature while we investigate a more general scheme for
decreasing the library size.

Part of: HDFFV-9086

Tested on: h5committest
2015-02-27 07:50:38 -05:00
Mohamad Chaarawi
c4044e0c85 [svn-r26303] remove files with .clog2 extension generated by MPE when doing make clean. 2015-02-25 13:48:31 -05:00
Mohamad Chaarawi
0c29ac42cd [svn-r26279] re-commit 26260 that Dana moved out fixing the versioning of functions to work with v16 default API. 2015-02-23 10:14:43 -05:00
Dana Robinson
7e220930da [svn-r26276] Merged r26075-80, 86 from features/autotools_rework branch.
Cleans up time functions in the autotools input files. Removed deprecated
gettimeofday() time zone code and configure processing. Also removed
some unused time function configure checks and defines.

Fixes: HDFFV-9083 and HDFFV-9085

Tested on: 32-bit linux, serial and parallel (jam)
           OS X (kite)
           Solaris (emu)
2015-02-23 01:56:16 -05:00
Dana Robinson
f634105bdb [svn-r26271] Reverse merge of r26260 which was causing daily test failures.
Tested on: jam w/ parallel and fortran
2015-02-22 03:38:18 -05:00
Mohamad Chaarawi
fcd77ffe7e [svn-r26260] - add an attribute callback to call H5_term_library when MPI_COMM_SELF is destroyed.
- add tests for above.
- this is a fix for HDFFV-883.

tested h5committest
2015-02-20 16:33:48 -05:00
Mohamad Chaarawi
79d94c7bb7 [svn-r26222] call H5close before MPI_Finalize() and close some objects that could be potentially left open. 2015-02-18 16:17:15 -05:00
Allen Byrne
73bb11dda3 [svn-r26208] Update cmake minimums 2015-02-18 11:56:22 -05:00
Scot Breitenfeld
b28b5fade9 [svn-r26188] Merged autotools fixes into the trunk:
HDFFV-9089, HDFFV-9091, HDFFV-9092, HDFFV-9094, HDFFV-9095
2015-02-16 12:17:49 -05:00
Mohamad Chaarawi
74fbb9e327 [svn-r26180] merge configure fixes for HDFFV-9068,9069,9096,9097,9135 from autotools_rework branch:
- Remove Infering parallel compilers (C and Fortran) from configure.ac
- Remove restriction to build shared with parallel
- Cleanup parallel sections in configure.ac
- remove large file support checks
- MPE fixes.

tested with h5committest.
2015-02-16 11:17:03 -05:00
Mohamad Chaarawi
50c5f1ab2c [svn-r25963] Do not remove the prefix in the chunk alloc file, otherwise it makes
the H5Fcreate fail when prefix is specified.

tested parallel on Jam.
2015-01-08 12:36:10 -05:00
Quincey Koziol
662892e8b1 [svn-r25928] Description:
Minor code cleanups found while reviewing 'avoid_truncate' changes.

Tested on:
    MacOSX/64 10.10.1 (amazon) w/serial & parallel
    (too minor to require h5committest)
2014-12-29 00:17:22 -05:00
Mohamad Chaarawi
cbd0460b1b [svn-r25921] - wrap MPI 3 usage with MPI_VERSION compile time check.
- build out unbuffered stdout/err for windows
2014-12-23 09:54:47 -05:00
Quincey Koziol
c0ec3bf38e [svn-r25884] Description:
Minor code cleanups found while reviewing 'avoid truncate' branch.

Tested on:
    MacOSX/64 10.10.1 (amazon) w/serial & parallel
    (too minor to require h5committest)
2014-12-10 22:00:08 -05:00
Mohamad Chaarawi
3ba28fb7ee [svn-r25790] fix bug in shapesame test where test fails with more than 10
procs. This is a fix in the test itself and does not have to do with
the library code.

tested cloud machine with parallel.
2014-11-05 10:47:44 -05:00
Mohamad Chaarawi
5362b49bec [svn-r25779] fix bug in parallel tests where a compact dset is being created
proportional to the process count without regard to the 64KB limit for
compact datasets.

tested on jam with parallel.
2014-11-04 12:52:38 -05:00
Mohamad Chaarawi
87bed2c752 [svn-r25651] Fix for: HDFFV-8715
HDF5_PARAPREFIX is ignored in parallel dense attribute and performance tests.

tested on Jam w/ parallel.
2014-10-01 17:02:41 -05:00
Mohamad Chaarawi
ace4fef4d6 [svn-r25573] fix error output when dataset verify detects wrong data. 2014-09-05 14:30:42 -05:00
Mohamad Chaarawi
8771fba1de [svn-r25503] - fix bug in encode/decode plist parallel test when 1 proccess is used to run the test.
- fix warning in t_chunk_alloc.
2014-08-01 14:24:52 -05:00
Quincey Koziol
33ea1ada24 [svn-r25496] Description:
Merge 64-bit ID changes from branch to trunk.  (Plus a few minor cleanups
that aren't on the branch)

Tested on:
    Mac OSX/64 10.9.4 (amazon) w/C++ & FORTRAN
    (h5committested on branch already for a week)
2014-07-30 15:55:14 -05:00
Mohamad Chaarawi
92cc75bfae [svn-r25401] add serial and parallel regression tests for zero dset read/write bug. 2014-07-09 14:01:25 -05:00
Mohamad Chaarawi
382976f3e9 [svn-r25398] add a check to make sure MPI_File_get_size() returns correct value (HDFFV-8856). 2014-07-09 10:19:11 -05:00
Mohamad Chaarawi
06ef71a37f [svn-r25397] - remove configure checks for MPI_File_get_size and Big
MPI_File_set_size as they are supported by most MPI implementations.
- fix bug in t_mpi.c (HDFFV-8856)
2014-07-07 13:22:48 -05:00
Allen Byrne
e23830d29f [svn-r25282] remove obsolete file 2014-06-13 16:16:34 -05:00
Allen Byrne
21474f8eee [svn-r25188] Implement change to cmake_ext_mod config folder
Tested: local linux
2014-05-14 14:50:28 -05:00
Allen Byrne
d517af5086 [svn-r25135] Remove property will fail - This only is true on windows shared. 2014-04-29 10:26:35 -05:00
Allen Byrne
9fd8692663 [svn-r25128] HDFFV-8172: Add tests properties that indicate it will fail and to depend on PASSED in the output. 2014-04-28 15:20:11 -05:00
Larry Knox
c6e3e68297 [svn-r25117] Removed LT_ADD_LIBHDF5_DEPENDENCY configure conditional to roll back fix for removing rpaths from l
ib files.  The fix also removed dependencies on libhdf5, etc. when the --disable-sharedlib-rpath co
nfigure option was invoked.
Added instead configure variable hardcode_into_lib=no.  This removes rpath from lib files on Linux
and solaris machines.

Tested with h5committest on jam, koala, ostrich and platypus (cmake), and with configure option --disable-sharedlib-rpath on emu, platypus and quail.
2014-04-25 16:59:53 -05:00
Quincey Koziol
7b6eae2ddf [svn-r25084] Description:
Begin process of migrating from using property list IDs internally to the
library to using the internal generic property list data structure.

Tested on:
    Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & parallel
    (h5committest forthcoming)
2014-04-23 11:30:25 -05:00
Allen Byrne
98bbf4a36a [svn-r24948] Group tests by Common name
Remove WIN32 AND NOT CYGWIN if blocks - should be just WIN32

Tested: local linux CMake
2014-04-02 13:35:01 -05:00
Allen Byrne
c6fe8c70b2 [svn-r24932] HDFFV-8290: Remove unnecessary $(srcdir) and use AM_CPPFLAGS instead of INCLUDES. Update automake to 1.14.1
h5committest
2014-03-31 12:07:05 -05:00
Quincey Koziol
2e4302818a [svn-r24864] Description:
Remove all traces of MPI-POSIX VFD and GPFS detection/code.

    Remove remaining traces of stream VFD.

    Remove testpar/t_posix_compliant test (it's not actually verifying anything).

    Clean up H5D__mpio_opt_possible() further.

    Moved environment variable that disables MPI collective operations into
MPI-IO VFD (instead of it being in src/H5S.c).

    A few other small code cleanups.

Tested on:
    Mac OSX/64 10.9.2 (amazon) w/parallel & serial
2014-03-21 18:02:24 -05:00
Allen Byrne
f5689224b5 [svn-r24789] Bump up the minimum cmake version 2014-03-13 10:05:09 -05:00
Allen Byrne
6c5e74942d [svn-r24782] HDFFV-8700 -
KitWare recommendations: Change CMake commands to lower case.
2014-03-11 17:07:13 -05:00
Allen Byrne
a3292a77ce [svn-r24781] HDFFV-8700 -
KitWare recommendations: Change CMake commands to lower case.
Remove INCLUDE_DIRECTORIES in src for target level includes.
Change ADD_DEFINITIONS package debug defines into CMake option.
Remove -DNDEBUG
2014-03-11 16:14:57 -05:00
Quincey Koziol
5b7c8c7a7d [svn-r24772] Description:
Correct some dynamically sized arrays that fail on Windows.

Tested on:
    Mac OSX/64 10.9.2 (amazon) w/parallel
2014-03-10 13:03:35 -05:00
Quincey Koziol
ac0ef34a41 [svn-r24769] Description:
Check in Mohamad's changes to support collective I/O on point selections,
along with some other minor cleanups.

Tested on:
    Mac OSX/64 10.9.2 (amazon) w/parallel & serial
    (h5committest forthcoming)
2014-03-07 14:12:20 -05:00
Mohamad Chaarawi
863ff882b6 [svn-r24709] rename H5V to H5VM since H5V is needed in the fastforward project for
view objects.  The addition of view objects in the fastforward project
is expected to be brough into the trunk sometimes in the future, which
is why we need to make this change.

Tested Manually on Jam and Ostrich.
Tested with h5commitest - Koala with intel compilers failed, but nothing had to do with those changes.
error on Koala: error while loading shared libraries: libirng.so
2014-02-13 17:12:46 -05:00
Mohamad Chaarawi
6ceb9711b8 [svn-r24612] fix bugs in parallel tests exposed in corner cases when running with 1
or 2 processes.

First bug is in testpar/t_mdset.c, where the test reports an error in
addition to skipping the test if there are less than three procs. Fix
to just skip the test.

Second bug is in testpar/t_dset.c in actual_io_mode tests, where
incorrect expected value for IO mode was set if the number of procs
running the test is 1.

tested with h5committest.
2014-01-06 12:56:45 -05:00
Dana Robinson
0aa06db0a4 [svn-r24380] The parallel test code now uses HDfree, HDmalloc, and HDcalloc
exclusively.

Part of the preparation for a fix for HDFFV-8551.

Tested on:
    32-bit LE linux (jam) w/ parallel and Fortran.

There are no behavior changes, so testing was minimal.
2013-10-31 02:44:00 -05:00
Larry Knox
ab239810e1 [svn-r24194] Don't add hdf5 library dependencies to lib files when --disable-sharedlib-rpath configure option is invoked. Fix for HDFFV-8276.
Tested with h5committest and on hdf-duck.
2013-09-23 20:14:24 -05:00
Allen Byrne
c502d81a8c [svn-r24029] Move TESTS to seperate file to allow easier editing by all developers.
Tested: local linux
2013-08-19 16:49:44 -05:00
Allen Byrne
feb14ea872 [svn-r23745] HDFFV-8461: Add Windows /MT support
This adds the UserMacros.cmake support needed.
2013-06-10 12:46:48 -05:00
Albert Cheng
00648b6875 [svn-r23607] Purpose:
Daily test failed in koala with parallel and v16compat API from the previous
commit r22735.

Descriptoin:
    Changed to use H5Dopen2() instead of H5Dopen().

Tested: koala --enable-parallel --with-default-api-version=v16.
No h5committest test since this is limited to parallel test program.
2013-04-22 13:44:17 -05:00
Quincey Koziol
46342f6398 [svn-r23544] Description:
Correct API version mistake w/H5Acreate -> H5Acreate2

Tested on:
    Mac OSX/64 10.8.3 (amazon) w/parallel
2013-04-04 08:30:45 -05:00
Quincey Koziol
b4331b2ff3 [svn-r23529] Description:
Stop aliasing property to indicate internal collective metadata operations
with property to perform collective raw data operations from the application.

Tested on:
    Mac OSX/64 10.8.3 (amazon) w/paralllel
2013-04-02 21:50:50 -05:00