* commit '0a75da70a61d41a0bf20a5c617f3eb678ed0b103':
Yanked qsort assert
Switched to HGOTO_DONE() in the links code.
Updated the HDqsort() macro to ensure we don't pass NULL buffers to qsort(3) in the future.
Fixed a bug in the links code where iterating over an empty group would pass a NULL pointer to qsort(3), which is undefined behavior.
* commit 'dfdc27b04b2e8bcd1985ba90ce6553d8b3805fda':
Fix release notes based on feedback from pull request.
Fix for HDFFV-10800 H5Ocopy failure: The value for the H5F_LIBVER_V18 index in H5O_fill_ver_bounds[], the format version bounds array for fill value message, should be version 3 not 2.
* commit '6e1dc507240fba447c79827897b099e91b9dd5c1':
Add release note for enable-tools and enable-tests options.
Modified Makefile.ams for h5repack, h5watch and gif2h5 to allow disabling tests. Moved h5cc.in from tools/src/misc to src directory to always create h5cc whether or not tools are enabled. Added configuration status of tools and tests to libhdf5.settings.
Add options to enable or disable building tools and tests. The default is enabled for each.
Description:
Added wrappers for H5Pset/get_create_intermediate_group:
// Specifies in property list whether to create missing
// intermediate groups
void setCreateIntermediateGroup(bool crt_intmd_group) const;
// Determines whether property is set to enable creating missing
// intermediate groups
bool getCreateIntermediateGroup() const;
Platforms tested:
Linux/64 (jelly)
Linux/64 (platypus)
Darwin (osx1011test)
* commit '844f38c6462f42a9a3a6002de6a4acb0520b8fb7':
Correct entry
Snapshot version 1.11 release 4. Update version to 1.11.5.
Allow option to select NAMESPACE
Correct examples for packaging
* commit '0c20c65e2f3abf390ad87c9167daca4cdff2de39':
Added the HDopen work-around on windows to pio_engine.c
Adds _wopen support on Windows so that files with UTF-8 names can be opened.
* commit 'bae744199b69eb7c3f5eda2441cca30cb8c6175f':
Add more specific batch scripts. Add script raybsub to handle submitting .lsf files on ray with bsub < script.lsf syntax that we couldn't handle with CMake. Add hpc-cmake-tgz option for bin/release.
Account info can be submitted as an argument to run the batch scripts. Special versions for sandia are not needed.
Add HDF5options.cmake files for serial and parallel tests on HPC machines (where tests are to be run as batch jobs. Add README_HPC file with instructions for setting up configuration to use batch scripts for running tests on HPC machines and some pointers for cross compiling.
Remove knl configuration from ctestS.sl.in.cmake. Add sandia batch files with account info.
Add batch files with batch parameters specific to cori and ray. Release.txt entry for skipping long double dt_arith tests on ppc64.
machines (where tests are to be run as batch jobs.
Add README_HPC file with instructions for setting up configuration
to use batch scripts for running tests on HPC machines and some
pointers for cross compiling.
after deleting attributes in densed storage.
The fix: When deleting attribute nodes from the name index v2 B-tree,
if an attribute is found in the intermediate B-tree nodes, which may be
merged/redistributed in the process, we need to free the dynamically
allocated spaces for the intermediate decoded attribute.
* commit 'e21c1cf7c6ee6dba5dd5bfd1a525227ac1304b53':
Removed H5I_REFERENCE from the library. It has always been unused and has been marked 'deprecated' since 1.10.0. Fixes HDFFV-10252.
and CMake.
* CMake will no longer install private generated headers and tools
library headers.
* Several empty public header files (which represent internal packages)
were removed. These were only installed by CMake.
* Autotools installs will install H5FDwindows.h.
Fixes HDFFV-10614.
* commit 'e96bd2d46e208e0eb6c62cfcc4f86141f933884e':
CMake changes for SKIPPED and flush tests
H5S adjust callbacks now return an herr_t instead of void.
Normalization with vol_integration (property lists, file drivers, other misc).
* commit '08de02c838c05993fea5febb9c320a679e7f841a':
Changes based on feedback from pull request.
Fix test_misc33() in test/tmisc.c Open the test file read-only so that it can be accessed for testing.
Modifications made based on feedback from pull request.
Fix for HDFFV-10333: 1) Check for valid object header version for a refcount messge 2) Check for invalid fill value size 3) Check for invalid dimension size in a layout message 4) Add --enable-error-stack option to h5stat 5) Add error checks to h5stat.c 6) Add tests to h5stat and h5dump
Fix daily test failure.
* commit '25f80cbbec3a7d8036325784168b029cb71cc813': (324 commits)
Snapshot version 1.10 release 3 (snap3)
Update document
HDFFV-10433 Updated text to address issues raised.
Snapshot version 1.10 release 3 (snap2)
Updated version to 1.10.3-snap2
Merge corrections from develop
HDFFV-10473 add note for attribute fix
Correct attribute location
HDFFV-9739 and cmake improvements merge from develop
Fix for HDFFV-10469: set to latest format for virtual layout encoding.
Update Windows test machines
Fix soversion
Fixed libver bounds underscore issue
removed extraneous lib. ver. bound, PR comment
temporary fix for HDFFV-10469
Updated version to 1.10.3-snap1
Add new file
Correct number of tests
Whitespace and test reclassify merge from develop
HDFFV-10444 fix so numbers and merge java test changes
...
* commit '87829e06189cd9b29583b5ca8065b52b1f4cd523': (30 commits)
HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
Cleaned up H5Fmount/unmount code.
Normalization with vol_integration branch.
Add fortran MPI to test and example
Add mpi include folders for fortran C objects
Normalization with the vol_integration branch.
Fixed MANIFEST
Fix usage of compression lib in shared tests
Fix jni function call version
Fix the error found after earlier checkin.
H5O_info fixes for java and examples
Added a RELASE.txt entry for HDFFV-10505.
Changed 'deprecated' to indicate 'no longer supported' in the --enable-debug/production configure flags.
(1) Made the change according to the pull request feedback. (2) Removed the performance test form test/th5o.c: will decide on what needs to be done to show speedup via HDFFV-10463.
Normalize with vol_integration.
Removed unused H5MF functions and updated FUNC_ENTER macros and naming in H5MFsection.c.
Restored some unused #defines to the deprecated section of H5Dpublic.h.
Changes made based on feedback from pull request #1039.
...
* commit '57f64b92d19fed2879ee9bafe1d29bfac865d54c': (30 commits)
HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
Cleaned up H5Fmount/unmount code.
Normalization with vol_integration branch.
Add fortran MPI to test and example
Add mpi include folders for fortran C objects
Normalization with the vol_integration branch.
Fixed MANIFEST
Fix usage of compression lib in shared tests
Fix jni function call version
Fix the error found after earlier checkin.
H5O_info fixes for java and examples
Added a RELASE.txt entry for HDFFV-10505.
Changed 'deprecated' to indicate 'no longer supported' in the --enable-debug/production configure flags.
(1) Made the change according to the pull request feedback. (2) Removed the performance test form test/th5o.c: will decide on what needs to be done to show speedup via HDFFV-10463.
Normalize with vol_integration.
Removed unused H5MF functions and updated FUNC_ENTER macros and naming in H5MFsection.c.
Restored some unused #defines to the deprecated section of H5Dpublic.h.
Changes made based on feedback from pull request #1039.
...
* commit 'e79f9a73feb1b18c52a1608336aff612d2732d5b':
Couple fixes to the test routine for HDFFV-10425.
Add test and release info for the fix to HDFFV-10425 test failure with H5DOwrite_chunk.
* commit '6a1627f2967099039e11b9e86cf347f6482bdf3c':
Fix for HDFFV-10425 test failure with H5DOwrite_chunk and latest format
Fix date.
Correct the date in RELEASE.txt for H5DOread_chunk.
Add release info for H5DOread_chunk.
Updated RELEASE.txt Description: Wrappers for H5Tencode and H5Tdecode No code change.
Fixed HDFFV-10151 Description: Added a document to the HDF5 C++ API Reference Manual to show the mapping from a C API to C++ wrappers.
Fix memory leak simply by capturing allocation in var
Change max value
Chnage values so test will fail when new latest is added
Exception changed
Exception type changed
Correct constant var names
Java constants for new lib verbounds values
* commit '02a9433fa0aac34ae81ab5f0d5b97a7934881215':
Add 2 parallel test files to CHECK-CLEANFILES so that if their tests fail before removing them, make check-clean will remove them.
Fixed memory leak Description: Added LinkCreatPropList to initH5cpp to cleaning up resource at exit. Platforms tested: Linux/64 (jelly) Linux/ppc64 (ostrich)
HDFFV-10412 add note for new H5error_on Java API
* commit 'f30873136be7cb444166d019c57d3508ff79fc76':
Rework new tests into one macro
Added a "won't fix" RELEASE.txt entry for HDFFV-10356.
Fix CMake test names
Fixed typo
Add release note for HDFFFV-10397.
Added a fix for HDFFV-10358.
Fixed documentation Description: - Updated the description of copy constructor for clarification. - Removed unnecessary comments. Platforms tested: Linux/64 (jelly)
Enhancement to the tool h5clear (HDFFV-10360)
Fix for HDFFV-10209 VDS SWMR test failure Free the object header when there are chksum retries.
* commit '9247388c3d14510341ea3f07847ce2cbb6e44a8e':
Rework new tests into one macro
Added a "won't fix" RELEASE.txt entry for HDFFV-10356.
Fix CMake test names
Fixed typo
Add release note for HDFFFV-10397.
Added a fix for HDFFV-10358.
Fixed documentation Description: - Updated the description of copy constructor for clarification. - Removed unnecessary comments. Platforms tested: Linux/64 (jelly)
Enhancement to the tool h5clear (HDFFV-10360)
Fix for HDFFV-10209 VDS SWMR test failure Free the object header when there are chksum retries.
* commit 'cf110b33c825f15e8a101b5772d15ec282ff85bf': (105 commits)
Unify the test (t_bigio.c) between hdf5_1_10 and develop
Remove comparison to NULL for variables to be freed.
Add HDfree of vector, matrix_out and matrix_out1 previously HDmalloced in coll_write_test().
merged from develop
merged from develop
removed duplicate code
Code improvement Description: - Removed memory leaks caused by accidentally invoking p_get_member_type - Added the call to test_lcpl, missed previously Platforms tested: Linux/64 (jelly) Linux/ppc64 (ostrich) Darwin (osx1010test)
Updated RELEASE.txt Description: - Wrappers for H5Lcreate_soft, H5Lcreate_hard, H5Lcopy, H5Lmove, H5Ldelete, and H5Lget_info - Class LinkCreatPropList - Fixed typo in source file Platforms tested: Linux/64 (jelly)
Updated for H5LcreatProp.[h,cpp]
Updated MANIFEST for H5LcreatProp.[h,cpp]
HDFFV-10149 continued Description: - Moved the new wrappers committed on Mar 9: 43158f3bb3 to H5Location and renamed some of them for overloading. This is because the loc_id in the C APIs can be file, group, dataset, named datatype, and attribute. Previous implementation was wrong following some inaccurate C API reference manual.
Re-factor coding for H5P/Sencode with libver bounds.
Removed commented out code from H5FDmpio.c, H5FDprivate.h and H5Fint.c
Upated cpp doc.
Added C++ wrappers - HDFFV-10149 Description: Added the following wrappers to class H5::Group: + H5Lcreate_soft: // Creates a soft link from link_name to target_name. void newLink(const char *target_name, const char *link_name,...) void newLink(const H5std_string& target_name,...)
Improve code Description: Added notes and changed argument to H5Fcreate to clarify the latest situation Platforms tested: Linux/64 (jelly)
Resolve compilation errors.
Add release note
Remove obsolete comments
Change CMake min to 3.10
...
Modified 43158f3bb3 and additional wrappers.
* commit 'b638bbd74b79f935a43aa6a804492e035ec315f6':
Code improvement Description: - Removed memory leaks caused by accidentally invoking p_get_member_type - Added the call to test_lcpl, missed previously Platforms tested: Linux/64 (jelly) Linux/ppc64 (ostrich) Darwin (osx1010test)
Updated RELEASE.txt Description: - Wrappers for H5Lcreate_soft, H5Lcreate_hard, H5Lcopy, H5Lmove, H5Ldelete, and H5Lget_info - Class LinkCreatPropList - Fixed typo in source file Platforms tested: Linux/64 (jelly)
Updated for H5LcreatProp.[h,cpp]
Updated MANIFEST for H5LcreatProp.[h,cpp]
HDFFV-10149 continued Description: - Moved the new wrappers committed on Mar 9: 43158f3bb3 to H5Location and renamed some of them for overloading. This is because the loc_id in the C APIs can be file, group, dataset, named datatype, and attribute. Previous implementation was wrong following some inaccurate C API reference manual.
* commit 'd8723ac1178a69c4dff7164203d999d61c2159bb':
Fix for HDFFV-10357 (CVE-2017-17508).
Fix for HDFFV-10355 (CVE-2017-17506).
Fix for HDFFV-10354 (CVE-2017-17505).
