Commit Graph

685 Commits

Author SHA1 Message Date
Neil Fortner
6a27582a44 [svn-r26781] Merge revisions 26305 through 26780 from trunk to vds branch.
Tested: ummon
2015-04-10 18:00:48 -05:00
Allen Byrne
7a4b02567e [svn-r26775] Update error file with new item. 2015-04-09 15:52:06 -05:00
Albert Cheng
5cc53e3ba2 [svn-r26750] HDFFV-8667: h5repack crashes on enumerated 8-bit type nested in compound type.
Added the testing to h5repack where it belongs.
Undo the tests added to h5dump.

Tested: h5committested plus tested in jam by hand.
2015-04-07 13:10:21 -05:00
Allen Byrne
b9e5e2af4e [svn-r26721] Disable failing test 2015-04-03 13:57:24 -05:00
Larry Knox
3032f3adf3 [svn-r26711] Recommitting revisions 26669 and 26670, removing VPATH and redundant /usr/include and lib in fcompile and link flags checks, now that I have run reconfigure.
Also changed paths to h5cc, etc. in scripts to run installed examples from relative paths to absolute paths.

Tested with h5committest.
2015-04-02 16:07:53 -05:00
Albert Cheng
33c8035f0e [svn-r26702] HDFFV-8667: h5repack crashes on enumerated 8-bit type nested in compound type.
Description:
The test added failed in some machines because the data file contains infinity values that different machines print them differently as "inf", "INF", "Inf", ...

Solution:
Added a "ignorecase" option to TOOLTEST() to do caseless matching between generated output vs expected output. This solved most machines problem for now.

Tested: h5committest, emu by hand for both development and production modes.
But cmake built h5dump failed to read the data file. Using the same source to build h5dump by autotools produced a h5dump that can read the test data file. Don't know why cmake could not produce a correct binary.
2015-04-01 16:18:18 -05:00
Allen Byrne
99baa66184 [svn-r26699] Generators are only built static 2015-04-01 16:02:43 -05:00
Allen Byrne
6f03b60c61 [svn-r26693] Remove use of obsolete HDF5_USE_FILTER_{internal} 2015-04-01 13:30:56 -05:00
Allen Byrne
db2e8ff371 [svn-r26683] Remove internal filter checks 2015-03-31 16:28:44 -05:00
Allen Byrne
e9db2519b5 [svn-r26682] Add new test from test script 2015-03-31 16:16:59 -05:00
Albert Cheng
cf11eef385 [svn-r26677] HDFFV-8957: h52gif crashes when run against one of our own examples
The tool claimed it could handle 24bit images but there was no code to handle it.
(or might be there were but was removed by previous revisions.)
Also discovered that it does not accept multiple images nor -p for palette
as its user document and online help message indicated.

Solution: 
Added code to verify dimension sizes are within 8 bit raster images limit and
added tests to verify the tools correctness.
Need to update user document tool.

Tested: h5committested.
2015-03-31 14:13:34 -05:00
Larry Knox
306775bc98 [svn-r26670] Remove VPATH and LONE_COLON
Tested with h5committest
2015-03-30 19:05:07 -05:00
Allen Byrne
45577d5693 [svn-r26660] HDFFV-9131: autotols rework
Remove CXX_CONDITIONAL
remove unneeded/obsolete sections.

h5commtitest
2015-03-30 13:55:21 -05:00
Mohamad Chaarawi
01093ad350 [svn-r26649] squish warnings. 2015-03-30 10:12:49 -05:00
Allen Byrne
451a91e53b [svn-r26594] Merge macros and fortran changes from dual_binary feature.
Tested: local linux
2015-03-25 17:08:46 -05:00
Jerome Soumagne
1cd7c16a9d [svn-r26509] Run reconfigure after merges from autotools_rework branch. 2015-03-20 14:15:51 -05:00
Dana Robinson
7659506fa8 [svn-r26438] Fixed some double promotion warnings from gcc 4.9.2. Most were in
format strings.

Tested on: h5committest
2015-03-11 17:51:14 -05:00
Allen Byrne
ec2e071c00 [svn-r26380] Recapture updated error files for h5dump tests 2015-03-06 08:53:42 -05:00
Dana Robinson
d8e3d8e908 [svn-r26333] Eliminates gcc warnings due to -Wunsuffixed-float-constants.
- Adds 'F' suffixes for most float constants.

- A few constants MUST be of type double. These now receive the long
  double L suffix and are then cast to double. I do this via a new
  H5_DOUBLE() macro which was added to H5private.h.

Fixes: HDFFV-9148

Tested on: h5committest
2015-03-01 13:48:54 -05:00
Dana Robinson
7462a7ef1c [svn-r26329] Merge of r26069, r26070, and r26072 from the features/autotools_rework
branch.

Removed the configure option that allows selective disabling of individual
internal filters (fletcher32, shuffle, etc.).

This feature mucked up the code with a lot of #ifdefs, saved very little space,
and was not scalable to a general scheme for library size reduction. We've
decided to remove the feature while we investigate a more general scheme for
decreasing the library size.

Part of: HDFFV-9086

Tested on: h5committest
2015-02-27 07:50:38 -05:00
Mohamad Chaarawi
c4044e0c85 [svn-r26303] remove files with .clog2 extension generated by MPE when doing make clean. 2015-02-25 13:48:31 -05:00
Allen Byrne
73bb11dda3 [svn-r26208] Update cmake minimums 2015-02-18 11:56:22 -05:00
Scot Breitenfeld
b28b5fade9 [svn-r26188] Merged autotools fixes into the trunk:
HDFFV-9089, HDFFV-9091, HDFFV-9092, HDFFV-9094, HDFFV-9095
2015-02-16 12:17:49 -05:00
Mohamad Chaarawi
74fbb9e327 [svn-r26180] merge configure fixes for HDFFV-9068,9069,9096,9097,9135 from autotools_rework branch:
- Remove Infering parallel compilers (C and Fortran) from configure.ac
- Remove restriction to build shared with parallel
- Cleanup parallel sections in configure.ac
- remove large file support checks
- MPE fixes.

tested with h5committest.
2015-02-16 11:17:03 -05:00
Allen Byrne
98958b530a [svn-r25904] Fix CMP0054 warning 2014-12-19 10:13:55 -05:00
Allen Byrne
573d47083b [svn-r25744] Add bitfield and opague datatype file for tests.
Tested: local linux
2014-10-27 15:50:33 -05:00
Allen Byrne
5a4357e4fb [svn-r25570] UNDO:Added option to build tools static when building shared libraries. This will prevent 'dll' being appended to the tool name on windows. See HDFFV-8292.
Windows DLL linkage problem because of defines needed.

Tested: local linux
2014-09-03 14:04:18 -05:00
Allen Byrne
c23f3a7ea5 [svn-r25569] Added option to build tools static when building shared libraries. This will prevent 'dll' being appended to the tool name on windows. See HDFFV-8292.
Tested: local linux
2014-09-03 12:12:52 -05:00
Quincey Koziol
33ea1ada24 [svn-r25496] Description:
Merge 64-bit ID changes from branch to trunk.  (Plus a few minor cleanups
that aren't on the branch)

Tested on:
    Mac OSX/64 10.9.4 (amazon) w/C++ & FORTRAN
    (h5committested on branch already for a week)
2014-07-30 15:55:14 -05:00
Mohamad Chaarawi
06ef71a37f [svn-r25397] - remove configure checks for MPI_File_get_size and Big
MPI_File_set_size as they are supported by most MPI implementations.
- fix bug in t_mpi.c (HDFFV-8856)
2014-07-07 13:22:48 -05:00
Allen Byrne
21474f8eee [svn-r25188] Implement change to cmake_ext_mod config folder
Tested: local linux
2014-05-14 14:50:28 -05:00
Allen Byrne
8f57e86ab9 [svn-r25185] update cmake command name case 2014-05-12 13:14:46 -05:00
Larry Knox
c6e3e68297 [svn-r25117] Removed LT_ADD_LIBHDF5_DEPENDENCY configure conditional to roll back fix for removing rpaths from l
ib files.  The fix also removed dependencies on libhdf5, etc. when the --disable-sharedlib-rpath co
nfigure option was invoked.
Added instead configure variable hardcode_into_lib=no.  This removes rpath from lib files on Linux
and solaris machines.

Tested with h5committest on jam, koala, ostrich and platypus (cmake), and with configure option --disable-sharedlib-rpath on emu, platypus and quail.
2014-04-25 16:59:53 -05:00
Dana Robinson
7309bb5ab8 [svn-r25113] Fixed Subversion EOL and executable attributes. No code changes. 2014-04-25 16:27:37 -05:00
Allen Byrne
98bbf4a36a [svn-r24948] Group tests by Common name
Remove WIN32 AND NOT CYGWIN if blocks - should be just WIN32

Tested: local linux CMake
2014-04-02 13:35:01 -05:00
Dana Robinson
d01ee66666 [svn-r24937] Adds an H5free_memory() function to the library for use with
functions that return library-allocated memory. The test and tool
code were modified to use this new function where it's appropriate.

Fixes HDFFV-7710, HDFFV-8519, and HDFFV-8551

Tested on:
    64-bit Windows 7 w/ VS2012
    32-bit LE linux w/ parallel and fortran (jam)
    32-bit LE linux w/ fortran and C++ (jam)
2014-03-31 18:35:09 -05:00
Allen Byrne
c6fe8c70b2 [svn-r24932] HDFFV-8290: Remove unnecessary $(srcdir) and use AM_CPPFLAGS instead of INCLUDES. Update automake to 1.14.1
h5committest
2014-03-31 12:07:05 -05:00
Quincey Koziol
f97d63cb95 [svn-r24869] Description:
Clean up more compiler warnings, plus merge a few Coverity bug fixes from
the hdf5_1_8_coverity branch back to the trunk:

r20877:
Purpose: Fix coverity issue 1723

Description:
Modified test_generate in hl/test_image to close file "f" before exit, even if
an error occurs.

r20879:
Issue 63: change check of return of H5Tget_nmembers to <=0. No need to go
futher if call fails as well as empty.

r20881:
Coverity #659 in Run 46: I changed the Line 442 where it tries to check whether
FLAG_PRINTED is TRUE.  But it had just been set to FALSE.  I took out the
condition check in the print statement.

Tested on:
    Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & Parallel
    (too minor to require h5committest)
2014-03-23 01:27:57 -05:00
Quincey Koziol
2e4302818a [svn-r24864] Description:
Remove all traces of MPI-POSIX VFD and GPFS detection/code.

    Remove remaining traces of stream VFD.

    Remove testpar/t_posix_compliant test (it's not actually verifying anything).

    Clean up H5D__mpio_opt_possible() further.

    Moved environment variable that disables MPI collective operations into
MPI-IO VFD (instead of it being in src/H5S.c).

    A few other small code cleanups.

Tested on:
    Mac OSX/64 10.9.2 (amazon) w/parallel & serial
2014-03-21 18:02:24 -05:00
Allen Byrne
03d10edd23 [svn-r24824] HDFFV-8700 -
KitWare recommendations: Change CMake commands to lower case.
Bump up CMake minimum versions.
Split test file into separate file for h5repack test.

Tested: local linux
2014-03-18 11:21:46 -05:00
Allen Byrne
f5689224b5 [svn-r24789] Bump up the minimum cmake version 2014-03-13 10:05:09 -05:00
Allen Byrne
6c5e74942d [svn-r24782] HDFFV-8700 -
KitWare recommendations: Change CMake commands to lower case.
2014-03-11 17:07:13 -05:00
Allen Byrne
a3292a77ce [svn-r24781] HDFFV-8700 -
KitWare recommendations: Change CMake commands to lower case.
Remove INCLUDE_DIRECTORIES in src for target level includes.
Change ADD_DEFINITIONS package debug defines into CMake option.
Remove -DNDEBUG
2014-03-11 16:14:57 -05:00
Quincey Koziol
1e36b5a348 [svn-r24726] Description:
Revert some earlier usage of strncpy, which was incorrect.

    Bring Coverity changes from branch back to trunk:

r20821:
    Use HDstrncpy. --gh
    (Fixed already, with strdup)

r20822:
    (Not merged, incorrect use of HDstrncpy())

r20823:
    (Not merged, incorrect use of HDstrncpy())

r20824:
    Maintenance: Bug fix: addressed CID 666.
    Value stored at *expression_len should be used in the call to
        HD5packFstring to avoid overflow (and unnecessary arithmetic
        calculation and casting) 

r20825:
    Issue 642: Added check for error and handler with print to stderr and exit.

r20826:
    Undo revision 20818, as that issue has already been fixed in the 1.8 branch
        and trunk (but not coverity branch)

r20827:
    (Not merged, incorrect use of HDstrncpy())
    
r20828:
    Use HDstrncpy. --gh
    (Corrected use of strncpy())

r20829:
    Check return of H5Lget_val(print_udata->fid, path, targbuf,
        linfo->u.val_size + 1, H5P_DEFAULT) and if error set trgbuf[0] to 0.
        Check if  H5Lunpack_elink_val(targbuf, linfo->u.val_size, NULL,
        &filename, &objname) was successful and allow print. Otherwise filename
        and objname are not created. (init those to NULL)

r20830:
    resolved coverity issues 939, 940, 941, 944, and 947.

    all were complaints about use of sprintf, and in all cases, the
    buffers used were large enough for all eventualities.

    Resolved issue by replacing calls to sprintf with calls
    to snprintf.

r20831:
    Maintenance: Addressed CID 852
    Replaced sprintf with snprintf

r20832:
    Purpose: Fix valgrind issues with hl/examples/ex_image2

    Description:
    Modified hl/examples/ex_image2 to free global "gbuf" before exit.

Tested on:
    Mac OSX/64 10.9.1 (amaon) w/C++, FORTRAN & Threadsafety
    (too minor to require h5committest)
2014-02-20 16:29:26 -05:00
Allen Byrne
624a466600 [svn-r24482] HDFFV-8635: remove test of whole file and just test dsets that have szip compression.
Tested local linux with cmake and autotools
2013-12-02 15:32:22 -05:00
Allen Byrne
5e695ce4bc [svn-r24481] HDFFV-8635: disable test because of szip causing different read call then expected. 2013-12-02 14:31:25 -05:00
Allen Byrne
2f097704ca [svn-r24471] JAVA-1798: Add the testfiles for hdf-java and the h5dump tests including the test to read filter data.
Tested: cmake and autotools - local linux
2013-11-27 11:01:16 -05:00
Allen Byrne
43690b681c [svn-r24411] Correct file generation 2013-11-07 11:45:25 -05:00
Allen Byrne
8190a5e4b3 [svn-r24408] Add compound integer tests files
Tested: local linux cmake
2013-11-06 13:28:12 -05:00
Allen Byrne
819b8099e2 [svn-r24392] Cleanup testfiles from scripts. Update lists of files to be cleaned. CMake update to clean testfiles.
Tested: local cmake, autools, and h5committest
2013-11-01 16:15:37 -05:00