Commit Graph

19083 Commits

Author SHA1 Message Date
Jordan Henderson
b0feaecdb9 Merge pull request #1425 in HDFFV/hdf5 from ~JHENDERSON/hdf5:develop to develop
* commit '659dd9bccf69f32bfdd01dc49410116ec5c1b0bb':
  Align H5Lcreate_ud behavior with documentation for NULL udata pointer
2019-01-04 14:06:10 -06:00
Allen Byrne
564565b15e HDFFV-10664 update reference file 2019-01-04 13:29:22 -06:00
Allen Byrne
e07fb46bdc HDFFV-10664 update reference files 2019-01-04 13:29:01 -06:00
Larry Knox
8887c357ee Merge pull request #1429 in HDFFV/hdf5 from HDFFV-10596-fortran-library-names-differ to develop
* commit 'f4c9ec5d41aa53829617274d3286f1e9a45ae57e':
  Add RELEASE.txt entry for HDFFV-10596.
  Uninstall should remove the libhdf5_hl_fortran links.
  Add symlinks named libhdf5_hl_fortran* to libhdf5hl_fortran in Makefile.am to match cmake install and the name pattern for other hl lib files.
2019-01-04 13:04:41 -06:00
Larry Knox
f4c9ec5d41 Merge remote-tracking branch 'origin/develop' into HDFFV-10596-fortran-library-names-differ 2019-01-04 13:02:27 -06:00
Allen Byrne
28d5d987b5 HDFFV-10664 add missing function and check for restriction 2019-01-04 12:52:37 -06:00
jake.smith
46bf1647d4 Merge pull request #1430 in HDFFV/hdf5 from ~JAKE.SMITH/hdf5:dset_ohdr_minimize to develop
* commit 'f7115c31363e80e850c0a228e63a5a035c48b74a':
  Remove "bad" statements at end of TEST_ERROR.     Formerly arguments to FAIL_PUTS_ERROR
  Add semicolon at end of TEST_ERROR() invocation for consistency.
2019-01-04 11:46:54 -06:00
Jacob Smith
f7115c3136 Remove "bad" statements at end of TEST_ERROR.
Formerly arguments to FAIL_PUTS_ERROR
2019-01-04 11:28:39 -06:00
Dana Robinson
f012602d3a Merge pull request #1428 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:openmpi_tweaks to develop
* commit 'd59aa1d75cb6d0ae4f5964d017e275aa53394eb6':
  Cleaned up the parallel flush test and set t_pflush1 to always fail. Also set CMake to handle this.
2019-01-04 10:35:22 -06:00
Larry Knox
482d95c8f9 Add RELEASE.txt entry for HDFFV-10596. 2019-01-04 09:34:18 -06:00
Jacob Smith
a0c6e622e4 Add semicolon at end of TEST_ERROR() invocation for consistency. 2019-01-04 09:07:55 -06:00
Larry Knox
cc0421291e Uninstall should remove the libhdf5_hl_fortran links. 2019-01-04 08:50:10 -06:00
Larry Knox
30abf02de2 Add symlinks named libhdf5_hl_fortran* to libhdf5hl_fortran in
Makefile.am to match cmake install and the name pattern for other hl lib
files.

Add missing ';' to test/dsets.c line 13075.
2019-01-04 07:26:15 -06:00
jake.smith
9ac12ce299 Merge pull request #1427 in HDFFV/hdf5 from ~JAKE.SMITH/hdf5:dset_ohdr_minimize to develop
* commit '763db8178e673fdcae4a370fe2e6d345f905d5f1':
  Change FAIL_PUTS_ERROR to TEST_ERROR.
  Update calls: H5Dcreate to H5Dcreate2, H5Acreate to H5Acreate2.
2019-01-03 23:16:12 -06:00
Jacob Smith
763db8178e Change FAIL_PUTS_ERROR to TEST_ERROR. 2019-01-03 23:02:20 -06:00
Dana Robinson
d59aa1d75c Cleaned up the parallel flush test and set t_pflush1 to always fail.
Also set CMake to handle this.
2019-01-03 20:45:58 -08:00
Allen Byrne
2a28b92e2b Merge pull request #1426 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit 'f4516d40feb7ea696e228253bc64a94f55296cbb':
  Fix comment
  Update toolchain comment
  Use c99 standard cmake variable
  Add PGI toolchain
2019-01-03 14:47:10 -06:00
Jacob Smith
3b53747b3a Update calls: H5Dcreate to H5Dcreate2, H5Acreate to H5Acreate2. 2019-01-03 14:44:57 -06:00
Binh-Minh Ribler
5daddcc2d4 Merge pull request #1408 in HDFFV/hdf5 from ~BMRIBLER/hdf5_bmr_fixbug:develop to develop
Merged to catch daily test.

* commit '40c55f24ecbdd322fba527d768689fbdbd268374':
  Removed a comment.
  Fixed documentation - typo only
  Fixed CVE division-by-zero issues Description:     Fixed HDFFV-10577 and similar issues found in H5Dchunk.c.  All     the occurrences are in:         H5D__create_chunk_map_single         H5D__create_chunk_file_map_hyper         H5D__chunk_allocate         H5D__chunk_update_old_edge_chunks         H5D__chunk_prune_by_extent         H5D__chunk_copy_cb         H5D__chunk_collective_fill Platforms tested:     Linux/64 (jelly)     Linux/64 (platypus)     Darwin (osx1010test)
2019-01-03 09:50:01 -06:00
M. Scot Breitenfeld
390a3f6728 Added chunked dataset, H5S_ALL test 2019-01-03 09:47:14 -06:00
Binh-Minh Ribler
40c55f24ec Removed a comment. 2019-01-03 09:47:01 -06:00
Allen Byrne
f4516d40fe Fix comment 2019-01-03 09:36:00 -06:00
Jordan Henderson
659dd9bccf Align H5Lcreate_ud behavior with documentation for NULL udata pointer
Add test for H5Lcreate_ud fix
2019-01-03 09:35:44 -06:00
Allen Byrne
9d0c66c7cb Update toolchain comment 2019-01-03 09:33:55 -06:00
Allen Byrne
6f6d0921c0 Use c99 standard cmake variable 2019-01-02 17:07:37 -06:00
Allen Byrne
eaaddcc9e5 Add PGI toolchain 2019-01-02 14:39:38 -06:00
Allen Byrne
c820502e69 Merge pull request #1421 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit 'ed0c468902409ae7fa8fb91c5f5a3a3093846736':
  HDFFV-10664 add check for state before set call
  HDFFV-10546 refactor variable name
  HDFFV-10664 minimized dataset headers for java interface
2019-01-02 14:38:30 -06:00
Vailin Choi
c70498f7a9 Merge pull request #1414 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to develop
* commit 'd3dff6efe6f769b219f9dcccebd057afe75ed3c7':
  Correction based on code review.
  Changes based on feedback from pull request.
  Fix for HDFFV-10659: The library abort with "infinite loop closing library" after deleting attributes in densed storage. The fix: When deleting attribute nodes from the name index v2 B-tree, if an attribute is found in the intermediate B-tree nodes, which may be merged/redistributed in the process, we need to free the dynamically allocated spaces for the intermediate decoded attribute.
2019-01-02 13:26:58 -06:00
Vailin Choi
d3dff6efe6 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into develop
Resolve conflicts:
Conflicts:
	test/Makefile.am
2019-01-02 13:23:54 -06:00
Vailin Choi
7f9c459995 Correction based on code review. 2019-01-02 12:51:47 -06:00
Allen Byrne
ed0c468902 HDFFV-10664 add check for state before set call 2019-01-02 12:47:37 -06:00
jake.smith
71f4e1832c Merge pull request #1420 in HDFFV/hdf5 from ~JAKE.SMITH/hdf5:dset_ohdr_minimize to develop
* commit '8324be7fad5f1417aca3d283a8f8caf6b75c4af7':
  fix wrong function name that is missed by correctional macro
2019-01-02 12:29:11 -06:00
M. Scot Breitenfeld
3a738e249b Merge branch 'develop' of ssh://bitbucket.hdfgroup.org:7999/~brtnfld/hdf5_msb into develop 2019-01-02 12:05:02 -06:00
M. Scot Breitenfeld
b39960580e typo 2019-01-02 12:04:43 -06:00
M. Scot Breitenfeld
422d6daf6b typo 2019-01-02 11:53:41 -06:00
M. Scot Breitenfeld
57c2637df2 Merge branch 'develop' of ssh://bitbucket.hdfgroup.org:7999/~brtnfld/hdf5_msb into develop 2019-01-02 11:48:59 -06:00
M. Scot Breitenfeld
774098afa6 updated defined constants 2019-01-02 11:48:48 -06:00
Allen Byrne
f3636c573f HDFFV-10546 refactor variable name 2019-01-02 11:27:55 -06:00
M. Scot Breitenfeld
ffff13f0f3 Documented HDFFV-10652 2019-01-02 11:11:24 -06:00
Larry Knox
f9736d817e Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit 'af21ce90d9465e805807f17da21f93e64e03492a': (46 commits)
  Changed to Unix line endings and chmod -x.
  Fix runtest case for data to stdout in tool
  Updated the parallel install docs.
  Eliminated the need for a separate script variable.
  Flipped swapped testing strings.
  Specify variable type. Remove unnecessary whitespace.
  Added test_vol_plugin.sh to the list of scripts to clean
  Fixed a CMake build issue (CMake still doesn't run the VOL plugin tests)
  Added more sub-tests to the VOL plugin test.
  Added a simple test for registration of VOL connector plugins. Autotools only for right now, but this will be fleshed out in future work.
  OHDR tests now accept h5_fileaccess() fapls. Formatting, informative comments, and minor renaming.
  Fix some CMake listings
  Add error checking to the minimized dset header size calculation. Update printf->HDprintf statements.
  Remove `#if 0` block of deprecated code.
  Fix mistake with H5E_BEGIN_TRY {...} H5E_END_TRY block containing ERROR-raising macros. Formatting tweaks.
  Added a helpful message to the flush script.
  Added a shell script so we can run the parallel flush test on OpenMPI.
  Add "compact" storage test to relative header size comparisons.
  Formatting adjustments.
  Formatting adjustments
  ...
2019-01-02 10:07:31 -06:00
M. Scot Breitenfeld
00990e28f3 Merge branch 'develop' of ssh://bitbucket.hdfgroup.org:7999/~brtnfld/hdf5_msb into develop 2019-01-02 09:52:38 -06:00
M. Scot Breitenfeld
58decdbd88 HDFFV-10652
Implemented a process-0 read and then broadcast
for collective read of full datasets (H5S_ALL) by
all the processes in the file communicator.
2019-01-02 09:51:44 -06:00
M. Scot Breitenfeld
55f7fe7f1b Removed reason for breaking read-proc0-and-bcast 2019-01-02 09:39:03 -06:00
Allen Byrne
fb5d3347e6 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit 'af21ce90d9465e805807f17da21f93e64e03492a':
  Changed to Unix line endings and chmod -x.
  Cleaned up and normalized VFD init calls.
2019-01-02 09:03:43 -06:00
Dana Robinson
af21ce90d9 Merge pull request #1423 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor_pr to develop
* commit '1f644fe7cd0188628571c5527f51fce4ddeeebf4':
  Changed to Unix line endings and chmod -x.
2019-01-02 07:14:37 -06:00
Dana Robinson
1f644fe7cd Changed to Unix line endings and chmod -x. 2019-01-01 14:30:26 -08:00
Dana Robinson
d5f642b559 Merge pull request #1422 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:vfd_init_cleanup to develop
* commit '07b76068a4517f874fc5584049178ed5f61e3cea':
  Cleaned up and normalized VFD init calls.
2019-01-01 12:50:00 -06:00
Dana Robinson
07b76068a4 Merge branch 'develop' into vfd_init_cleanup 2018-12-31 17:19:39 -08:00
Allen Byrne
c3cad8e5f3 HDFFV-10664 minimized dataset headers for java interface 2018-12-31 16:34:07 -06:00
Jacob Smith
8324be7fad fix wrong function name that is missed by correctional macro 2018-12-31 15:18:13 -06:00