Commit Graph

14224 Commits

Author SHA1 Message Date
Neil Fortner
1b78408184 [svn-r26149] Fix potential memory error reported by valgrind in
H5D__link_chunk_collective_io.  This would occur when performing collective I/O
on a dataset with only 1 chunk, and a participating process had nothing to read
or write.

Tested: jam, koala, ostrich (h5committest)
2015-02-09 11:31:28 -05:00
HDF Tester
f4a60fc34c [svn-r26146] Snapshot version 1.9 release 213 2015-02-08 06:05:07 -05:00
Scot Breitenfeld
06d1971f41 [svn-r26124] Fixed issue with deprecated symbols for H5G constants 2015-02-04 09:38:16 -05:00
Scot Breitenfeld
5060fb1050 [svn-r26122] Fix for HDFFV-9040 h5rget_object_type_f returns different types than indicated by API
Slight change of global variable definitions from C.

Tested: jam.
2015-02-03 13:52:27 -05:00
Allen Byrne
3946ec882b [svn-r26112] Add quotes around name 2015-02-02 13:02:57 -05:00
Allen Byrne
ba35eb0f05 [svn-r26109] Correct name of source file 2015-02-02 13:00:34 -05:00
Allen Byrne
fc93c6fe70 [svn-r26106] Disable flush1/flush2 test under debug VFD on Windows. 2015-02-02 12:01:15 -05:00
HDF Tester
67f41bf9f8 [svn-r26092] Snapshot version 1.9 release 212 2015-02-01 06:03:18 -05:00
Mohamad Chaarawi
a9cf3b658b [svn-r26087] update build procedure for Hopper (Cray).. only static now.
Will add shared when we introduce support later.
2015-01-30 15:49:39 -05:00
Allen Byrne
e05c75ea4e [svn-r26074] fix test destination 2015-01-29 12:58:27 -05:00
Allen Byrne
055348122d [svn-r26040] HDFFV-9018: Install pdb files to bin folder with dlls. 2015-01-26 15:23:19 -05:00
Allen Byrne
eb3900554e [svn-r26036] HDFFV-8736: Patch H5PL.c and test for cygwin plugin support.
Tested: local linux and cygwin
2015-01-26 13:03:18 -05:00
Mohamad Chaarawi
f4e69ad579 [svn-r26012] make the print format for address overflow error windows friendly. 2015-01-23 09:57:35 -05:00
Scot Breitenfeld
374f064f82 [svn-r26011] Added (i.e. re-added) missing h5oget_info_c definition. 2015-01-23 08:54:04 -05:00
Scot Breitenfeld
1e3f530848 [svn-r26010] Fix for:
HDFFV-9049
Intel 15.0 15.0.1 Fails with --enable-fortran2003

Added BIND to the Fortran 2003 functions.

Tested: windows (tested concept)
        linux (--enable-fortran and --enable-fortran2003)
2015-01-22 16:56:03 -05:00
Scot Breitenfeld
324f087d05 [svn-r26009] Code Comment cleanup:
-----------------------
Remove the numbers in the comments associated with:

       H5G_UNKNOWN_F (-1)
       H5G_LINK_F      0
       H5G_GROUP_F     1
       H5G_DATASET_F   2
       H5G_TYPE_F      3

These should not be defined as a number since they can changed. They should be considered named parameters, not actual values. 

HDFFV-9040
h5rget_object_type_f returns different types than indicated by API
2015-01-22 16:53:30 -05:00
Mohamad Chaarawi
543a8d9d86 [svn-r26005] fix error return value. minor change. 2015-01-22 14:26:42 -05:00
Mohamad Chaarawi
5eee1d7d7e [svn-r26002] move checks on reading/writing beyond file eoa outside of the file drivers and into a centralized place in H5FD_read/write.
tested h5committest.
2015-01-22 12:15:21 -05:00
Mohamad Chaarawi
a24e3e5c86 [svn-r25994] revert adding the has_mpi_atomicity feature flag and use the has_mpi
flag instead.
2015-01-21 13:57:55 -05:00
Mohamad Chaarawi
de47d219c9 [svn-r25993] remove last usage of IS_H5FD_MPIO. 2015-01-21 12:05:03 -05:00
Allen Byrne
21ef17f951 [svn-r25990] Add VFD flush2 depends on flush1 property to test 2015-01-21 09:31:46 -05:00
Allen Byrne
3b742b733b [svn-r25987] Use variable instead of hard coded value 2015-01-20 15:02:17 -05:00
Allen Byrne
aafac8d770 [svn-r25986] HDFFV-9060: Changed test folder to use different test folders for VFDs and regular. Needed to set srcdir env var and specify working folder to the folders where all the reference files were copied.
Tested: local linux
2015-01-20 14:44:28 -05:00
Mohamad Chaarawi
aac2bb6182 [svn-r25984] change the message flag H5O_MSG_FLAG_FAIL_IF_UNKNOWN to
H5O_MSG_FLAG_FAIL_IF_UNKNOWN_AND_OPEN_FOR_WRITE. Will add a new
H5O_MSG_FLAG_FAIL_IF_UNKNOWN_ALWAYS with the new avoid_truncate patch
coming later.

tested h5committest
2015-01-20 12:17:05 -05:00
Mohamad Chaarawi
1949c40bfd [svn-r25983] HDFFV-1125: Eliminate IS_H5FD_MPI() macro use in the library and replace with driver feature flag(s).
Add an MPI atomicity feature flag and remove the macro from the library.

tested Parallel on Jam.
2015-01-20 10:26:45 -05:00
HDF Tester
234e77b3f9 [svn-r25981] Snapshot version 1.9 release 211 2015-01-18 06:01:21 -05:00
Scot Breitenfeld
485faa47e7 [svn-r25980] Reverting check-in 25978, C_LONG_DOUBLE seems to be 16 bytes sometimes and 10 bytes other times. Not sure why. 2015-01-15 10:18:45 -05:00
Scot Breitenfeld
c6cf45e3e7 [svn-r25978] Bug fix for HDFFV-8847
Tested: h5committest
2015-01-13 11:23:07 -05:00
HDF Tester
d3ddfe842d [svn-r25975] Snapshot version 1.9 release 210 2015-01-11 06:05:36 -05:00
Albert Cheng
0ebac5f389 [svn-r25971] Update with retirement of AIX 5.3 and addition of AIX 6.1 support. 2015-01-09 10:33:54 -05:00
Mohamad Chaarawi
50c5f1ab2c [svn-r25963] Do not remove the prefix in the chunk alloc file, otherwise it makes
the H5Fcreate fail when prefix is specified.

tested parallel on Jam.
2015-01-08 12:36:10 -05:00
Allen Byrne
5da20c221e [svn-r25955] Added Perform and io_timer back into build.
Tested: local linux cmake
2015-01-05 16:52:26 -05:00
Albert Cheng
6a982a7690 [svn-r25954] HDFFV-9046: reorganize hdf5/perform, step 2
Last changes had caused problems with Windows platform:
1. H5private.h in io_timer.h is not accessible in the distributed shared library of tools.
   Need to move it to io_timer.c.
2. debug_start_stop_time() would not be available outside of h5perf. Some favor of compiler
   does not like it.  Screened it out for now.
3. mere "extern" is not good enough for Windows shared library. Must mark them as DLL. Need to mark them as 
   "H5TOOLS_DLL".
4. STANDALONE mode is broken. Screened out the code for now.

Tested; h5committest.
2015-01-05 16:47:34 -05:00
Allen Byrne
671006a10d [svn-r25953] Comment out printf statement as it caused system resource issues on Windows. Test now executes in 1/10 of time.
Tested: local linux and Windows
2015-01-05 16:32:43 -05:00
Allen Byrne
6b109315f5 [svn-r25951] HDFFV-9054: disable io_timer in tools lib and perform sub-folder due to SHARED compile issues and other issues. 2015-01-05 11:21:22 -05:00
HDF Tester
509cd32da2 [svn-r25949] Snapshot version 1.9 release 209 2015-01-04 06:04:11 -05:00
Albert Cheng
fe1bf91042 [svn-r25946] Removed debug statments that use //.
Tested: env CFLAGS=-ansi buildhdf5 in jam and parallel platypus.
2015-01-03 23:51:03 -05:00
Albert Cheng
c803666ec2 [svn-r25940] HDFFV-9046: reorganize hdf5/perform, step 2
Move timing measurement routines used by h5perf and h5perf_serial to tools/lib
so that they can be used by other tools too.

tools/lib/io_timer.c
tools/lib/io_timer.h
tools/perform/io_timer.c
tools/perform/io_timer.h
    renamed perform/io_timer.[ch] to lib/io_timer.[ch]

tools/lib/Makefile.am
tools/lib/Makefile.in
tools/lib/CMakeLists.txt
tools/perform/Makefile.in
tools/perform/Makefile.am
tools/perform/CMakeLists.txt
MANIFEST
    updated due to the move.

Tested; h5committest and jam (serial)
2015-01-01 11:24:55 -05:00
Allen Byrne
dcc956f594 [svn-r25938] Remove build and test commands for deleted benchpar.c 2014-12-31 13:06:27 -05:00
Allen Byrne
7affd93d05 [svn-r25934] Fix incorrectly combined check. 2014-12-31 12:50:47 -05:00
Albert Cheng
f5d2975018 [svn-r25933] updated. 2014-12-30 09:49:02 -05:00
Albert Cheng
aebc4ae149 [svn-r25932] HDFFV-8902: merge the source code of h5perf and h5perf_serial, stage 1.
tools/perform/sio_timer.h:
tools/perform/pio_timer.c:
tools/perform/io_timer.h:
tools/perform/io_timer.c:
    Renamed pio_timer.[ch] as io_timer.[ch];
    merged content of sio_timer.[ch] into io_timer.[ch] so that both h5perf and h5perf_serial
    call the combined io_timer.[ch].
    Moved the debug printing code segment in set_time() in [sp]io_timer.c to as debug_start_stop_time() in [sp]io_perf.c where it belongs.
    Screened out set_timer_type() and get_timer_type() which were not used by any code.

tools/perform/Makefile.am:
tools/perform/Makefile.in:
tools/perform/CMakeLists.txt
    Adjusted to use io_timer.c for both h5perf and h5perf_serial.

tools/perform/pio_perf.c:
tools/perform/sio_perf.c:
tools/perform/pio_perf.h:
tools/perform/sio_perf.h:
    Renamed [sp]io_time_destory() to same io_time_destroy();
    Moved the debug printing code segment in set_time() in [sp]io_timer.c to as debug_start_stop_time() in [sp]io_perf.c where it belongs.

tools/perform/pio_engine.c:
tools/perform/sio_engine.c:
    Removed #include io_timer.h since it was already #include by [sp]io_perf.h.

MANIFEST:
    Updated the merge of [sp]io_timer.[ch] into io_timer.[ch].

Tested: h5committest and jam in extra.
2014-12-30 00:56:05 -05:00
Quincey Koziol
b65eae7aee [svn-r25929] Description:
Clean up EOF code within library and add 'mem_type' parameter to 'get_eof'
VFD callback, to avoid various ambiguous situations, particularly with the
multi VFD.  (Supports changes for 'avoid_truncate' feature also)

Tested on:
    MacOSX/64 10.10.1 (amazon) w/serial & parallel
    h5committest forthcoming
2014-12-29 01:02:06 -05:00
Quincey Koziol
662892e8b1 [svn-r25928] Description:
Minor code cleanups found while reviewing 'avoid_truncate' changes.

Tested on:
    MacOSX/64 10.10.1 (amazon) w/serial & parallel
    (too minor to require h5committest)
2014-12-29 00:17:22 -05:00
HDF Tester
b7047b6425 [svn-r25924] Snapshot version 1.9 release 208 2014-12-28 06:03:37 -05:00
Scot Breitenfeld
fc8767cf82 [svn-r25923] Added name to the BIND(C) attribute, removed the !DEC$ statements for windows. 2014-12-23 10:08:55 -05:00
Mohamad Chaarawi
d4e70e8cae [svn-r25922] mpi version check for new mpi 3 features should be >= 3 rather than == 3. 2014-12-23 10:02:40 -05:00
Mohamad Chaarawi
cbd0460b1b [svn-r25921] - wrap MPI 3 usage with MPI_VERSION compile time check.
- build out unbuffered stdout/err for windows
2014-12-23 09:54:47 -05:00
Scot Breitenfeld
443bc1200f [svn-r25920] Undo BIND(C) addition. 2014-12-23 09:34:17 -05:00
Allen Byrne
e0c586cd98 [svn-r25918] If not testing skip building test only programs. 2014-12-22 09:45:46 -05:00