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1112 Commits

Author SHA1 Message Date
Dana Robinson
e6cace9ee4 [svn-r24376] Updated all code to use HDmalloc, HDcalloc, and HDfree. 
Prep work for adding a memory free function, part of HDFFV-8551.

Tested on:
    32-bit LE linux (jam) 
        * with C++, Fortran
        * with thread safety on

    These are minor changes (almost entirely renaming foo functions
    to HDfoo) that don't change functionality.  This should not
    require a full commit test.
 2013-10-30 23:20:36 -05:00
HDF Tester
56803a1970 [svn-r24362] Snapshot version 1.9 release 168 2013-10-27 04:33:34 -05:00
HDF Tester
8538cf61f9 [svn-r24334] Snapshot version 1.9 release 167 2013-10-20 04:21:31 -05:00
HDF Tester
5092f5a30e [svn-r24287] Snapshot version 1.9 release 166 2013-10-13 03:43:04 -05:00
HDF Tester
a4ab8b0e1d [svn-r24218] Snapshot version 1.9 release 165 2013-09-29 03:41:59 -05:00
Larry Knox
ab239810e1 [svn-r24194] Don't add hdf5 library dependencies to lib files when --disable-sharedlib-rpath configure option is invoked. Fix for HDFFV-8276. 
Tested with h5committest and on hdf-duck.
 2013-09-23 20:14:24 -05:00
HDF Tester
f9a758f442 [svn-r24186] Snapshot version 1.9 release 164 2013-09-22 04:17:20 -05:00
Larry Knox
2c6fc585fd [svn-r24114] Reverting the changes in r24113 for now because they break parallel make fortran. The changes aren't incorrect, but more work in needed on dependencies and also for enable-parallel. 
Reverted to r24112.
 2013-09-06 17:42:10 -05:00
Quincey Koziol
f825256c87 [svn-r24113] Description: 
Reduce warnings w/gfortran in FORTRAN build by declaring interface for
utility test routines.

Tested on:
    Mac OSX/64 10.8.4 (amazon) w/gcc/g++/gfortran 4.8
 2013-09-06 15:27:13 -05:00
Quincey Koziol
5b876c929f [svn-r24101] Description: 
Clean up warnings, enable new compiler warning flag(s) and bring back
changes from Coverity branch:

r20813:
Remove the dead code as listed for coverity bug #1722. h5committested.

r20814:
Issue 69: Check return value and throw error if negative return. Also free datatype id on error

r20815:
Use HDstrncpy. --gh

r20816:
Replaced one last HDstrcat call with HDstrncat to resolve coverity issue 832.

r20817:
Use HDstrncpy and HDstrncat. --gh

r20818:
Purpose: Fix valgrind issues with h5jam

Description:
Modified h5jam to free strings strdup'd in parse_command_line before exit. Note
that they may still not be freed in case of error, due to the widespread use of
exit().

r20819:
Issue 80: change loop to use int as loop index.

r20820:
Maintenance: Fixed the bug found by coverity CID 788
There were two problems with this function:
    1) it tried to unnecessary free NULL pointer
    2) it tried to allocate c_name buffer that is done by H5Pget_class_name


Tested on:
    Mac OSX 10.8.4 (amazon) w/gcc 4.8.1, C++ & FORTRAN
    (too minor to require h5committest)
 2013-09-05 15:44:14 -05:00
HDF Tester
a4294ab3cc [svn-r24092] Snapshot version 1.9 release 163 2013-09-01 03:37:42 -05:00
Larry Knox
d24404ae83 [svn-r24077] Updated -help output for compile scripts for changing default from -noshlib to -shlib when hdf5 is built without static libraries (--disable-static). 
Tested with h5committest on jam, koala, ostrich and platypus.
 2013-08-27 08:26:37 -05:00
HDF Tester
ca60bda9fb [svn-r24068] Snapshot version 1.9 release 162 2013-08-25 03:44:51 -05:00
Allen Byrne
c502d81a8c [svn-r24029] Move TESTS to seperate file to allow easier editing by all developers. 
Tested: local linux
 2013-08-19 16:49:44 -05:00
Quincey Koziol
308c378ccd [svn-r24020] Description: 
Clean up compiler warnings

Tested on:
    Mac OSX/64 10.8.4 (amazon) w/C++ & FORTRAN
    (too minor to require h5committest)
 2013-08-17 15:05:27 -05:00
Allen Byrne
33d5f5d1e8 [svn-r24004] HDFFV-8319 and -8321: Cleanup autotools code. 
Also remove GetConsoleScreenInfo check from cygwin configure.

Tested: h5committest
 2013-08-13 12:53:23 -05:00
HDF Tester
407d3db6a4 [svn-r23989] Snapshot version 1.9 release 161 2013-08-11 03:37:02 -05:00
HDF Tester
f1b5d46cd0 [svn-r23968] Snapshot version 1.9 release 160 2013-08-04 03:35:17 -05:00
HDF Tester
f26b04712e [svn-r23926] Snapshot version 1.9 release 159 2013-07-21 03:38:01 -05:00
HDF Tester
4e12ec74ae [svn-r23895] Snapshot version 1.9 release 158 2013-07-14 03:31:23 -05:00
HDF Tester
3cb8efae13 [svn-r23865] Snapshot version 1.9 release 157 2013-07-07 03:33:31 -05:00
HDF Tester
a157eb2f68 [svn-r23849] Snapshot version 1.9 release 156 2013-06-30 03:35:12 -05:00
HDF Tester
6fedfb6124 [svn-r23806] Snapshot version 1.9 release 155 2013-06-23 03:36:24 -05:00
HDF Tester
bdbd06d85d [svn-r23778] Snapshot version 1.9 release 154 2013-06-16 03:34:51 -05:00
Allen Byrne
feb14ea872 [svn-r23745] HDFFV-8461: Add Windows /MT support 
This adds the UserMacros.cmake support needed.
 2013-06-10 12:46:48 -05:00
HDF Tester
70d440330d [svn-r23741] Snapshot version 1.9 release 153 2013-06-09 03:39:22 -05:00
HDF Tester
177a90f97a [svn-r23718] Snapshot version 1.9 release 152 2013-05-26 03:56:00 -05:00
HDF Tester
c09748b14e [svn-r23708] Snapshot version 1.9 release 151 2013-05-19 03:39:09 -05:00
HDF Tester
8f3aee85de [svn-r23669] Snapshot version 1.9 release 150 2013-05-05 03:32:05 -05:00
HDF Tester
1f09e9d19e [svn-r23642] Snapshot version 1.9 release 149 2013-04-28 03:37:26 -05:00
Allen Byrne
ed5a2bc1c1 [svn-r23614] Remove subfolders for includes 2013-04-23 12:50:15 -05:00
Scot Breitenfeld
c61fb7260a [svn-r23585] changed the integer kind in the enum to satisfy g95. 
Tested: jam (g95, gfortran)
 2013-04-14 16:19:40 -05:00
Scot Breitenfeld
337242feea [svn-r23576] added missing argument in check call. 
tested: jam (g95,gcc))
 2013-04-11 14:40:57 -05:00
Larry Knox
0b16cecb99 [svn-r23527] Revised usage to reflect change to use -shlib as default when no static libraries were built. 
No test - text only revision of compile scripts.
 2013-04-02 17:54:20 -05:00
Scot Breitenfeld
1b6963230b [svn-r23516] Updated documentation. 2013-04-01 19:58:44 -05:00
Raymond Lu
6c974c824d [svn-r23495] ported revisions 23433:23494 from the trunk 2013-03-29 18:13:05 -05:00
Larry Knox
99b1524474 [svn-r23431] Fix for HDFFV-8141. 
Changes default value for USE_SHARED_LIB in compile scripts to yes when static is disabled.
Comments in scripts about the order of flag variables containing library paths was also corrected.

Tested with h5committest on duck, jam, koala, and ostrich in addition to specific testing for the 
compile script change.
 2013-03-22 16:02:07 -05:00
Scot Breitenfeld
626fb1b02f [svn-r23379] HDFFV-8297 h5fc does not recognize files ending in .f95, .f03, and .f08 as source files 
added missing extensions.

Tested: jam (gnu)
 2013-03-18 23:14:59 -05:00
HDF Tester
e188e7797b [svn-r23361] Snapshot version 1.9 release 148 2013-03-17 03:28:21 -05:00
HDF Tester
c896a5b7eb [svn-r23341] Snapshot version 1.9 release 147 2013-03-10 04:34:50 -05:00
Scot Breitenfeld
ebb18c5186 [svn-r23325] Description 
------------

Fix for:
HDFFV-8149: h5pset_external_f API - the offset is declared integer which can cause problem if use 64-bit integer  

Added new type off_t, modified source files and added a new test.

Tested (jam, intel, gnu)
 2013-03-05 00:06:59 -05:00
HDF Tester
1cffcb401a [svn-r23323] Snapshot version 1.9 release 146 2013-03-03 11:20:00 -05:00
HDF Tester
66ba0b4f33 [svn-r23311] Snapshot version 1.9 release 145 2013-02-24 11:26:03 -05:00
Allen Byrne
aff5c20a6a [svn-r23305] HDFFV-8257: szip still used even if headers are not found. Change configure to test the result of the CHECK HEADERS call before checking for the library. 
Tested: local linux, h5committest
 2013-02-18 15:56:21 -05:00
Scot Breitenfeld
f3da4919c4 [svn-r23297] Temporary fix: PGI COMPILERS seem to have a bug in the INQUIRE function, 
waiting for an answer from PGI how to resolve the problem.

Tested: jam (pgi compiler)
 2013-02-18 10:28:36 -05:00
Scot Breitenfeld
2ec529c035 [svn-r23296] Fix HDFFV-8312: Problem using NAG compiler and F2003 interface 
added character bounds for C_LOC arguments.

Tested: jam (gnu)
 2013-02-17 22:46:06 -05:00
Scot Breitenfeld
4e08487549 [svn-r23295] Did not intend to check in this file with the previous ci. 
reverted check in.
 2013-02-17 22:10:17 -05:00
Scot Breitenfeld
a4521b7901 [svn-r23294] Related to: HDFFV-8265 
Fortran2003 option does not work under windows; Need to manage .def files more efficiently

Changed the comment notes from adding to the 'hdf5_fortrandll.def' to instead adding
to the 'hdf5_fortrandll.def.in' file.
 2013-02-17 21:22:29 -05:00
Scot Breitenfeld
a976ca99a9 [svn-r23293] Fix for HDFFV-8268: Fortran wrapper for H5Fget_file_image function. 
Tested: (jam, gnu,intel compilers)
 2013-02-17 21:01:18 -05:00
HDF Tester
32da9c96ae [svn-r23290] Snapshot version 1.9 release 144 2013-02-17 11:30:06 -05:00
Scot Breitenfeld
9d07161dd9 [svn-r23248] Made modification of comments for h5rget_name_*f for the loc_id identifier. 
Cleaned up comments.
 2013-02-11 20:28:08 -05:00
HDF Tester
944f0399ac [svn-r23240] Snapshot version 1.9 release 143 2013-02-10 11:25:10 -05:00
Scot Breitenfeld
386f73823a [svn-r23236] Fix for: HDFFV-8223 
Write a Fortran test for conversion fron enum to numeric type 

Tested (jam, gnu, intel)
 2013-02-07 19:28:55 -05:00
HDF Tester
b65a911b8a [svn-r23221] Snapshot version 1.9 release 142 2013-02-03 11:20:03 -05:00
HDF Tester
37d1a0330a [svn-r23180] Snapshot version 1.9 release 141 2013-01-20 11:23:56 -05:00
Allen Byrne
2fba171a67 [svn-r23160] HDFFV-8227: Mac DARWIN requires CMake 2.8.10 2013-01-14 13:35:30 -05:00
HDF Tester
2381dacdad [svn-r23153] Snapshot version 1.9 release 140 2013-01-13 11:18:18 -05:00
HDF Tester
c1b0e4f686 [svn-r23136] Snapshot version 1.9 release 139 2013-01-06 11:19:19 -05:00
Scot Breitenfeld
99af0ce575 [svn-r23134] Revised the comments to reflect what is in the F2003 standard. 2013-01-03 19:49:06 -05:00
HDF Tester
72e8ef707b [svn-r23121] Snapshot version 1.9 release 138 2012-12-30 11:18:08 -05:00
HDF Tester
d1b7de066e [svn-r23119] Snapshot version 1.9 release 137 2012-12-23 11:31:26 -05:00
Dana Robinson
7b5b6d239e [svn-r23111] Purpose: 
Fixes for HDF5 1.8.10 p1

HDFFV-7975
Changed the max single I/O operation size on Darwin/Mac OS X.

HDFFV-8124 and HDFFV-8158
Fixed a core VFD bug when large blocks of data are read.

HDFFV-8246
Added more fields to the VFD read/write error messages.

Tested on:
64-bit Windows 7, Visual Studio 2010, CMake
64-bit Mac OS X Snow Leopard (Fred), Fortran, C++
64-bit BE Linux (Ostrich), Fortran, C++
32-bit LE Linux (jam), Fortran, C++ (also parallel w/ Fortran)
 2012-12-19 16:51:55 -05:00
Scot Breitenfeld
a692fe88cd [svn-r23105] Changed Fortran examples to reflect tutorial examples via Barbara; 
added: h5_cmprss.f90

Tested: jam (gnu compilers)
 2012-12-15 17:59:00 -05:00
Scot Breitenfeld
8dc9f39570 [svn-r23093] Fixed API to be 1.6 compliant, removed deprecated APIs 
Checked: jam (gnu, mpi) --disable-deprecated-symbols, --with-default-api-version=v16
 2012-12-12 09:56:39 -05:00
Scot Breitenfeld
e92f4b1a7c [svn-r23092] Cleaned-up printed output and corrected output comments 
Tested: jam (gnu)
 2012-12-11 23:30:22 -05:00
Scot Breitenfeld
3079b8dde8 [svn-r23090] Fixed H5Dread input parameters. 
Tested: gnu (jam)
 2012-12-11 08:39:39 -05:00
Scot Breitenfeld
02fb07aa85 [svn-r23089] Changed Fortran examples to reflect changes in documentation via Barbara; 
mainly program name changes. Two new examples added: h5_extend.f90 h5_subset.f90 and
example fileexample.f90 was removed.

Tested: jam (gnu compilers)
 2012-12-10 17:41:13 -05:00
Scot Breitenfeld
17fd0e9ce4 [svn-r23088] Changed Fortran examples to reflect changes in documentation via Barbara; 
mainly program name changes. Two new examples added: h5_extend.f90 h5_subset.f90 and
example fileexample.f90 was removed.

Tested: jam (gnu compilers)
 2012-12-10 17:30:38 -05:00
HDF Tester
f89d080191 [svn-r23085] Snapshot version 1.9 release 136 2012-12-09 11:14:57 -05:00
HDF Tester
0de4e03305 [svn-r23071] Snapshot version 1.9 release 135 2012-12-02 09:57:47 -05:00
Allen Byrne
5697dc8f80 [svn-r23066] HDFFV-8265: create .def file during configure, added F2003 optional functions and refactor ISO_C_BINDING usage in cmake files 
Tested: local cmake
 2012-11-29 09:50:21 -05:00
Allen Byrne
b3c12e8d55 [svn-r23057] HDFFV-8265: create .def file during configure 
Tested: windows
 2012-11-27 10:53:30 -05:00
Allen Byrne
e5d4ba944f [svn-r23053] Remove deleted file from CMake build list 2012-11-26 08:56:29 -05:00
Scot Breitenfeld
e53f4cce8a [svn-r23052] Description: 
Removed example grpit.f90 which used undocumented/obsolete APIs, The equivalent and up-to-date example
to transverse through a file would be the example h5ex_g_traverse_F03.f90 in hdf5-examples.
 2012-11-25 22:08:02 -05:00
HDF Tester
48b241d52d [svn-r23050] Snapshot version 1.9 release 134 2012-11-25 09:47:11 -05:00
HDF Tester
9ac4fea3b0 [svn-r23039] Snapshot version 1.9 release 133 2012-11-18 09:57:04 -05:00
HDF Tester
82868270dc [svn-r23021] Snapshot version 1.9 release 132 2012-11-11 09:56:57 -05:00
Larry Knox
33504deb83 [svn-r22908] Reverted changes in revision 22819 
Tested with h5committest on jam, koala and ostrich.
 2012-10-16 16:38:58 -05:00
Scot Breitenfeld
2f798dc842 [svn-r22897] Cleaned up the comments, formatted for automatic documentation. 2012-10-12 22:23:47 -05:00
Scot Breitenfeld
777884558a [svn-r22896] Updated the robodoc resource file with new keywords and new options 
for generating the documentation.
 2012-10-12 22:22:38 -05:00
Scot Breitenfeld
ac472bb111 [svn-r22876] Fixed exporting subroutines that will not be compiled if --enable-fortran2003 
was not used.
 2012-10-09 18:59:33 -05:00
Scot Breitenfeld
223bdd1173 [svn-r22859] Fixed new functions that are used in the _F03 files, updated to reflect the correct 
module they are in.
 2012-10-03 15:05:25 -05:00
Allen Byrne
9603f61cda [svn-r22857] Change def list of RGET_REGION to match other types declarations 2012-10-03 13:55:57 -05:00
Scot Breitenfeld
3e59374ccd [svn-r22854] Fixed issues with default 8-byte real and default 8-byte integers and the new H5O routines. 
Tested: jam (gcc,intel)
 2012-10-02 19:53:21 -05:00
Allen Byrne
7648354b80 [svn-r22853] Change def list of RGET_REGION to match other types declarations 2012-10-02 12:53:03 -05:00
HDF Tester
d4657ce265 [svn-r22846] Snapshot version 1.9 release 131 2012-09-30 09:46:20 -05:00
Scot Breitenfeld
51bb0fe2d2 [svn-r22843] Renamed variable to match C. 
Tested: jam (gnu, mpich)
 2012-09-28 15:42:33 -05:00
Scot Breitenfeld
cc2669fedf [svn-r22842] Fixed typo in variable. 
Tested: jam (gnu,mpich)
 2012-09-28 15:29:38 -05:00
Scot Breitenfeld
08a5424f60 [svn-r22839] removed unused variable. 
tested: jam (pgi compiler)
 2012-09-28 09:48:12 -05:00
Scot Breitenfeld
5fba5c2e3a [svn-r22838] Fixed typo in variable name. 
Tested: jam (pgi compiler)
 2012-09-28 08:36:39 -05:00
Scot Breitenfeld
485b5dea69 [svn-r22829] Fixed merge mistake, merge removed part of the subroutine. 
tested: jam (intel)
 2012-09-27 15:24:03 -05:00
Scot Breitenfeld
7b9929e309 [svn-r22828] 
HDFFV-8007:Add missing H5O Fortran functions 

Added new F03 test file for new H5O functions.
 2012-09-27 14:48:54 -05:00
Scot Breitenfeld
0878e52087 [svn-r22827] HDFFV-8007: Add missing H5O Fortran functions. 
Tested: jam(gnu,intel)
 2012-09-27 14:43:48 -05:00
Scot Breitenfeld
393852a414 [svn-r22826] Fix for: HDFFV-7903 Fortran problem writing control character to a dataset 
reconfigured
 2012-09-27 14:21:45 -05:00
Scot Breitenfeld
32a131ea70 [svn-r22825] Fix for: HDFFV-7903 Fortran problem writing control character to a dataset 
Tested: (jam, gfortran)
 2012-09-27 14:20:09 -05:00
Scot Breitenfeld
a81cc2ac7e [svn-r22824] FIX: HDFFV-8118: Support Fortran compiler flags that change the default size of integer and real 
Tested: jam(gnu,intel), machine with gcc 4.7 and C long double = 16 bytes.
 2012-09-27 14:13:13 -05:00
Scot Breitenfeld
0710ab3955 [svn-r22823] Fix for HDFFV-7658: Add FORTRAN interface for H5Pget_mpio_actual_io_mode API routine 
Test: jam (gnu)
 2012-09-27 10:59:40 -05:00
Scot Breitenfeld
dbf542c008 [svn-r22822] Fix for HDFFV-7658: Add FORTRAN interface for H5Pget_mpio_actual_io_mode API routine 
Test: jam (gnu)
 2012-09-27 10:58:54 -05:00
Larry Knox
c5371d7618 [svn-r22819] Added H5BLD_STATIC and HDF5_USE_SHLIB to configure.ac so that if configured with --disable-static the default for HDF5_USE_SHLIB in the compile scripts will be changed to yes. This is a fix for HDFFV-8141, where the compile scripts try to link to non-existant static hdf5 libraries. 
Tested on jam,koala,ostrich(h5committest) and other THG machines.
 2012-09-26 23:49:19 -05:00
HDF Tester
528bd520b8 [svn-r22802] Snapshot version 1.9 release 130 2012-09-23 09:32:56 -05:00