Compiles either H5test_kind.f90 or H5test_kind_SIZEOF.f90 depending on the availability of intrinsic Fortran function SIZEOF (indicated by the status of FORTRAN_HAVE_SIZEOF).
Was not returning the correct fortran types when -i8 and -r8 flag was specified, fixed. This code is now depreciated and only used when SIZEOF function is not available, H5test_kind_SIZEOF.f90 should be used instead.
H5test_kind_SIZEOF.f90 is the preferred portable program used for Fortran type detection. It uses the intrinsic Fortran function SIZEOF. This program should be used instead of H5test_kind.f90 if the SIZEOF function is available. Most of the newer Fortran compilers support SIZEOF.
Put the DOUBLE PRECISION interfaces in a separate module and added a USE statement for the module. The interfaces are included/excluded depending on
the state of FORTRAN_DEFAULT_REALisDBLE_F which detects if the default REAL is DOUBLE PRECISION. This allows the library to be compiled with -r8 Fortran flag without the user needing to change the source code.
Put the DOUBLE PRECISION interfaces in a separate module. The interfaces are included/excluded depending on
the state of FORTRAN_DEFAULT_REALisDBLE_F which detects if the default REAL is DOUBLE PRECISION. This allows the library to be compiled with -r8 Fortran flag without the user needing to change the source code.
Added missing comma, i.e.
WRITE(*, "("" subroutine i"" i2.2,""()"")") j
should be
WRITE(*, "("" subroutine i"", i2.2,""()"")") j
etc...
as noted in bug 1251 and NAG compiler.
Checked the write fix using Sun f95, g95, pgf90, gfortran, ifort, absoft and all gave the correct write output.
Description:
As part of our Windows cleanup, we try to remove windows-specific tweaks in the source code. There are many instances where Windows code is introduces via ifdef's. We re-evaluate whether they are still required, and found that many of them are not. Others we change to "feature"-specific code, rather than Windows-specific.
Tested:
VS2005 on WinXP
VS.NET on WinXP
h5committest (kagisopp, smirom, linew)
Changed the error output formatting so that the
test status writes to standard out looks correct when using the
sun compiler (it did not correctly tab the output).
Uninstall target had non-existant file to remove; error_handler module triggered
a race condition for parallel make with Intel and PGI compilers, therefore we
removed the module and created a subroutine instead.
Platforms tested: kagiso with GNU, Intel and PGI compilers.
Added code to remove module files when make clean
Description:
The module files were not being removed when make clean
and caused compiling errors. fixed.
Made reporting of the test status global by handling the output
via a module. Cleaned-up output to the terminal.
Description:
Put writing the test status as a call to a subroutine
instead of on a per account basis.
Added the dependency of compiling in the correct order
in the Makefiles for use of the Module.
Description:
The fortran Makefile.am used HDF_FORTRAN to indicate it is part of the
Fortran API source so that conclude.am will give fortran api prefix in the
test output. The symbox HDF_FORTRAN is also used in configure for a different
purpose (indicated --enable-fortran). They conflicted.
Similar problem for the symbol HDF_CXX.
Solution:
Changed all the involved Makefile.am to use "FORTRAN_API" instead. It is
a more appropriate name. Same for CXX_API.
Along the way, discovered that the Makefile.am of hl/fortran/test and
hl/cxx/test did not have those symbols at all. Added them in.
Platform tested:
Kagiso only. It is a trivia change.
Cleaned up unused code (i.e. commented out) and removed extraneous output to standard out.
Tested:
N/A - No critical executable source lines were modified, only comments and write statements.
Fixed validation failure when compiled with -i8 and the g95 compiler
Description:
Fixed "off by one error" when converting C character buffer
into fortran character buffer in h5aget_name_by_idx_c
Improvement.
Description:
src/libhdf5.settings was the initial configure summary and is installed.
Then configure is changed to dump a summary of the configure settings to
the output and also append it to src/libhdf5.settings. That created
two different output formats and duplicated information. This is the
initial attempt to clean up this confusion and unify the output format.
It is decided to use the src/libhdf5.settings template as the unified means.
This requires more macros symbols be defined. The following symbols are
all related to generating the src/libhdf5.settings file.
AC_SUBST(EXTERNAL_FILTERS)
AC_SUBST(MPE) MPE=no
AC_SUBST(STATIC_EXEC) STATIC_EXEC=no
AC_SUBST(HDF_FORTRAN) HDF_FORTRAN=no
AC_SUBST(FC) HDF_FORTRAN=no
AC_SUBST(HDF_CXX) HDF_CXX=no
AC_SUBST(CXX) HDF_CXX=no
AC_SUBST(HDF5_HL) HDF5_HL=yes
AC_SUBST(GPFS) GPFS=no
AC_SUBST(LINUX_LFS) LINUX_LFS=no
AC_SUBST(INSTRUMENT) INSTRUMENT=no
AC_SUBST(CODESTACK) CODESTACK=no
AC_SUBST(HAVE_DMALLOC) HAVE_DMALLOC=no
AC_SUBST(DIRECT_VFD) DIRECT_VFD=no
AC_SUBST(THREADSAFE) THREADSAFE=no
AC_SUBST(STATIC_SHARED)
AC_SUBST(enable_shared)
AC_SUBST(enable_static)
AC_SUBST(UNAME_INFO) UNAME_INFO=`uname -a`
The src/libhdf5.settings.in has CONDITIONAL's added to it too. The
untrue conditions turned into a "#" and these lines are cleaned by the
post processing script.
Platform tested:
h5committest on kagiso, smirom and linew.
Changed the interface for the get_name_by_idx_f routine
Description:
Changed the 'size' which is the correct size of the returned
buffer to be an optional parameter.
Description:
There were a number of small tweaks we needed to make to add the new fortran_1_8 code on Windows. We create new project files, add new source to them, add the test to our test suite, and fix a few typos in the Windows-specific source code.
Tested:
VS2005 on WinXP
* test passing integer constant to subroutine
Description:
! -- CHECK PASSING AN INTEGER CONSTANT IN DIFFERENT FORMS --
! 1) call by passing an integer with the _hsize_t declaration
! 2) call by passing an integer with the INT(,hsize_t) declaration
! 3) call by passing a variable with the attribute hsize_t
This check-in should address Fortran failures on liberty and smirom.
Platforms tested: kagiso with Intel, smirom with g95 -fPIC, liberty with gfortran42
Description: Applying update to autotools that was applied to 1.8 a couple
of weeks ago to the trunk.
Updated bin/reconfigure script to reflect the new versions of
libtool and automake in the /home1/packages/ directory.
Rearranged configure.in script. When using libtool 2.2.2, the
libtool script doesn't generate until later in the configuration
process, so I had to move a test that parsed through the libtool
script to a point after where it was actually being generated.
Ran libtoolize on the project, and ran bin/reconfigure to
regenerate configure and Makefile.in's throughout.
Tested: kagiso, smirom, linew (h5committest)
Currently only one test (dense attributes) is failing. It looks like C library problem and we
have a similar bug report in Bugzilla: when dense storage is used, attributes are not written
to the file; somehow similar C test doesn't expose the problem while Fortran test does.
Platforms tested: linew, kagiso with g95 and PGI
Platforms tested: kagiso with PGI compilers, linew, smirom with GCC and g95 compilers;
some tests and function calls are commented out with !EP string; we will be
working on it.
Platforms tested: kagiso with g95 and Intel compilers; more testing will be done after checking in a fresh
copy from the trunk. New code itself was tested with all Fortran compilers available at THG
Correct the prototype for H5Sselect_elements() to take an 'hsize_t *' for
the coordinates, instead of 'hsize_t **'.
Tested on:
Mac OS X/32 10.5.1 (amazon)
Add work-around to allow reading files that were produced with a buggy
earlier version of the library, which could create objects with the wrong
object header message count. There is now a configure flag
"--enable-strict-format-checks" which triggers a failure on reading a file
with this sort of corruption (when enabled) and allows the object to be read
(when disabled). The default value for the "strict-format-checks" flag is
yes when the "debug" flag is enabled and no when the "debug" flag is disabled.
Note that if strict format checks are disabled (allowing objects with
this particular kind of corruption to be read) and the file is opened with
write access, the library will re-write the object header for the corrupt
object with the correct # of object header messages.
This closes bugzilla bug #1010.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Skip one of the tests in flush2.c since it looks like VMS system
flsuhes the file anyway (like on Winodws with DLLs)
Renamed files family*.h5 that are used in backward compatibility
testing to have only one '.' in a file name, otherwise VMS system
becomes confused and test fails.
Cleaned up the only test (Fortran multi-file test) that is failing on
VMS (C counterpart passesa).
Added new script to facilitate the build process on VMS
Updated MANIFEST
PLatforms tested: VMS server, kagiso and linew (minor changes)
Removed the stream-vfd from the basic library code.
(The stream-vfd source files are not removed yet but the MANIFEST has been
updated to NOT release those stream-vfd source files.)
Platforms tested:
Kagiso and smirom.
Then test the release tar ball in kagiso.
Change H5O[gs]et_comment to H5O[gs]et_comment_by_name and re-add simpler
forms of H5O[gs]et_comment.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Change H5Oget_info -> H5Oget_info_by_name and re-add H5Oget_info in a
simpler form for querying a particular object, to align with other new API
routines.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Change existing H5Gget_info -> H5Gget_info_by_name and add new version
of H5Gget_info, with simpler parameters, to better match new API routines.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Change H5Adelete2 -> H5Adelete_by_name and un-deprecate H5Adelete1 back
to H5Adelete, for better consistency with new other API routiens.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Changed H5Acreate2 -> H5Acreate_by_name, to be more consistent with
other new API routines.
Re-added simpler form of H5Acreate2, which creates attributes directly
on an object.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Change H5Aopen -> H5Aopen_by_name, in order to be more consistent with
other new API routines.
Re-add H5Aopen as a simpler routine, to open attributes on a particular
object. (Much like the old H5Aopen_name routine).
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Make H5Tarray_create() and H5Tget_array_dims() versioned, and drop the
"perm" parameter from the '2' versions.
Shift internal library usage to '2' versions.
Add simple regression tests for '1' versions.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Make H5Pget_filter_by_id() API versioned and switch internal usage
to H5Pget_filter_by_id2().
Add simple regression test for H5Pget_filter_by_id1().
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Make H5Pget_filter API versioned and switch internal usage to
H5Pget_filter2.
Add regression test for H5Pget_filter1.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Move H5Pinsert() out of old "compat v1.6" section and into API
versioning, switching internal usage to H5Pinsert2().
Add regression test for H5Pinsert1()
Clean up some other minor warnings.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Move H5Pregister our of old "compat v1.6" section and add it to the
versioned symbols.
Add simple regression test for H5Pregister1()
Split H5P.c source file into H5P/H5Pint/H5Pdeprec files.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Make H5Dopen versioned and change all internal usage to use H5Dopen2
Add simple regression test for H5Dopen1
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Deprecate H5Dextend in favor of H5Dset_extent (without using API
versioning, due to changed behavior) and switch internal usage to H5Dset_extent
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Put H5Acreate() under API versioning, with all internal usage shifted
to H5Acreate2().
Add regression tests for H5Acreate1().
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Move H5Aopen_name() routine to deprecated symbol section and replace
internal usage with H5Aopen().
Add simple regression test for H5Aopen_name() to deprecated routine
test.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Make H5Adelete versioned and switch internal library use to H5Adelete2.
Add regression test for H5Adelete1
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
AIX/32 5.3 (copper) w/FORTRAN, w/parallel, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Make H5Topen versioned, and add regression test for H5Topen1.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
AIX/32 5.3 (copper) w/FORTRAN, w/parallel, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Add API versioning to H5Tcommit()
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
AIX/32 5.3 (copper) w/FORTRAN, w/parallel, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Finish deprecating last H5G symbol (H5G_obj_t) - yay!
Lots of misc. library fixes to remove confusion between links and
objects. The tools could still use another pass, to remove h5trav_type_t type
and make the correct distinction between links & objects.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
AIX/32 5.3 (copper) w/FORTRAN, w/parallel, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Add H5Rget_obj_type() to the API versioning and switch internal
routines to use H5Rget_obj_type2()
Misc. other code cleanups, etc.
Tested on:
FreeBSD/32 6.2 (duty)
FreeBSD/64 6.2 (liberty)
Linux/32 2.6 (kagiso)
Linux/64 2.6 (smirom)
AIX/32 5.3 (copper)
Solaris/32 2.10 (linew)
Mac OS X/32 10.4.10 (amazon)
Move H5Gget_num_objs() and several minor macros, etc. to deprecated
symbols section, replacing it with H5Gget_info().
Tested on:
FreeBSD/32 6.2 (duty)
FreeBSD/64 6.2 (liberty)
Linux/32 2.6 (kagiso)
Linux/64 2.6 (smirom)
AIX/32 5.3 (copper)
Solaris/32 5.10 (linew)
Mac OS X/32 10.4.10 (amazon)
Move H5Giterate() and H5G_iterate_t to deprecated symbols section,
replacing them with H5Literate and H5L_iterate_t respectively.
Tested on:
FreeBSD/32 6.2 (duty)
FreeBSD/64 6.2 (liberty)
Linux/32 2.6 (kagiso)
Linux/64 2.6 (smirom)
AIX/32 5.3 (copper)
Solaris/32 5.10 (linew)
Mac OS X/32 10.4.10 (amazon)
Move H5Gget_linkval to deprecated symbol section and replace with
H5Lget_val for internal calls.
Tested on:
FreeBSD/32 6.2 (duty)
FreeBSD/64 6.2 (liberty)
Linux/32 2.6 (kagiso)
Linux/64 2.6 (smirom)
Solaris/32 5.10 (linew)
Mac OS X/32 10.4.10 (amazon)
Move H5Gmove2() to deprecated code section, replacing it with H5Lmove()
in the source code.
Tested on:
FreeBSD/32 6.2 (duty)
FreeBSD/64 6.2 (liberty)
Linux/32 2.6 (kagiso)
Linux/64 2.6 (smirom)
Solaris/32 5.10 (linew)
Mac OS X/32 10.4.10 (amazon)
Remove all plain calls to H5Gopen() from source, replacing them with
either H5Gopen2().
Add test for H5Gopen1().
Reformatted several pieces of code, to clean them up.
Tested on:
FreeBSD/32 6.2 (duty)
FreeBSD/64 6.2 (liberty)
Linux/32 2.6 (kagiso)
Linux/64 2.6 (smirom)
Solaris/32 5.10 (linew)
Mac OS X/32 10.4.10 (amazon)
Pursue calls to H5Gcreate() relentlessly and ruthlessly exterminate
them, leaving only a few tame specimens in text files and comments. ;-)
Tested on:
Mac OS X/32 10.4.10 (amazon)
FreeBSD/32 6.2 (duty)
FreeBSD/64 6.2 (liberty)
Linux/32 2.6 (kagiso)
Linux/64 2.6 (smirom)
Solaris/32 5.10 (linew)
First real use of API versioning code, H5E routines switched to use
new API versioning scheme.
Tested on:
Mac OS X/32 10.4.10 (amazon)
FreeBSD/32 6.2 (duty)
FreeBSD/64 6.2 (liberty)
Linux/32 2.6 (kagiso)
Linux/64 2.6 (smirom)
Solaris/32 5.10 (linew)
Description:
We are porting Fortran to 64-bit Windows, and need to make many syntactical changes to bring the code up to date. We now go back to using "!DEC$" rather than "!MS$" in our "ATTRIBUTE" code. Also, the naming conventions for mixed language is inconsistent from 32- to 64- bit Windows. To make up with this, we use the "decorate" flag. We also needed to change the "calling convention" in project settings from "CVF" to "default".
Also other minor cleanups on project files.
Tested:
32-bit: VS.NET and VS2005
64-bit: VS2005
Add --enable-deprecated-symbols configure option, to allow users to
remove deprecated public API symbols at configure time.
Add bin/make_vers script to bin/reconfigure actions.
Run bin/reconfigure to regenerate autotool components.
Tested on:
Mac OS X/32 10.4.10 (amazon)
FreeBSD/32 6.2 (duty)
Linux/32 2.6 (kagiso)
Bug fix.
Description:
It used to clean out all *.h5 when done but this could cause a racing
condition error if parallel make (e.g., gmake -j ...) is used because
the "rm ... *.h5 ..." would remove *.h5 generaged and are still used
by other test programs (e.g. xx_write/xx_read).
Solution:
Removed "*.h5" from the cleanup list since the test program has already
taken care of removing temporary *.h5 generated.
Tested platform:
smirom. Not triple platforms tested since this is just a simple shell
script change.
2) Removing configuration of c++/src/H5cxx_pubconf.h file.
Reasoning: the additional pubconf file caused compilation complications, this is cleaner.
Tested: kagiso, smirom
Description: added new configuration to generate a pubconf file
in the c++/src directory, H5cxx_pubconf.h. When C++
compiler recognizes 'offsetof', the macro
H5_CXX_HAVE_OFFSETOF is defined in the new
pubconf file.
tested: kagiso, smirom
Description: a new configure flag has been created that will now set a macro
in the test/Makefile. The flag is with-default-vfd=. When set to
a virtual file driver (e.g. "--with-default-vfd=sec2"), the macro
DEFAULT_VFD will hold this value.
Tested: kagiso, smirom, linew
file size from MPI_File_get_size. Bypass this problem by replacing it with
stat. Add an option --disable-mpi-size in configure to indicate this function
doesn't work properly. Add a test in testpar/t_mpi.c, too. If it returns wrong
file size, print out a warning.
Tested on kagiso (parallel) because already tested the same change to v1.6 on
several platforms (kagiso, cobalt, copper, and sol).
The test scripts did not take in account that the binary has been installed
somewhere other than the original prefix. Added a provision to allow
explicit definition of $prefix to work.
Tested:
kagiso.
H5Zpublic.h file didn't include H5public.h; done
H5Spublic.h had ghost function H5Sset_space; deleted
New source files were added to make.com for VMS.
h5gget_comment_c had a small bug in calculating buffer length; fixed
Platforms tested: pahra and kagiso; too minor for h5committest
Rename new error handling API routines from H5E<foo>_stack() to
H5E<foo>2().
Tested on:
Mac OS X/32 10.4.9 (amazon)
FreeBSD/32 6.2 (duty)
FreeBSD/64 6.2 (liberty)
Most fortran compilers do not support the Preprocessing -E option. Removed
the tests for preprocessing only.
examples/testh5cc.sh.in:
c++/examples/testh5c++.sh.in:
Updated comments and some cosmetic rearrangement.
No substance changes.
Tested platform:
Copper, kagiso.
Daily tests failed on smirom with g95
Solution:
Our algorithm to detect size of Fortran real had a flaw: it didn't work
when size of integer was bigger than real; fixed
Platforms tested:
smirom with g95 and -r8, -i4, -r8 -i4 combinations of compilation flags to set
different sizes of integers and real
smirom with pgf90 using -i8 flag and without it
linew in 32 and 64-bit modes
Description: Multiple copies of Copyright appeared in Makefile.in. This was
due to automake copying the copyright right in the included files such as
config/commence.am.
Solution: Automake treats double hashes as comments and does not copy them
to Makefile.in. Changed all the copyright notices in config/*.am to use
double hashes for the Copyright right notice.
Tested: kagiso via bin/reconfigure.
Tested platform:
Kagiso only since it is only a comment block change. If it works in one
machine, it should work in all, I hope. Still need to check the parallel
build on copper.
It was hardcoded to use /tmp/... as the default test file name.
Changed it to use $HDF5_PARAPREFIX/... to compose the test file name.
Platform Tested:
tg-ncsa since it failed there. (Will test other platforms after commit.)
The examples had been depending on the build libraries in src, but should have
been depending only on the installed h5cc. Fixed this.
Tested on kagiso (dependency change only, and was unable to replicate the
problem on any system). Real test will be Daily Tests tonight.
It seems that while Cygwin supports the time command, it has trouble with
the syntax
srcdir="../../hdf5/test" time ./testhdf5
and complains.
The solution is to test the above case in configure and not to use the time
command if it fails; Cygwin is fine with
srcdir="../../hdf5/test" ./testhdf5
Tested on Cygwin and kagiso. This feature shouldn't be a major compatibility
problem since every platform but Cygwin is already fine with the current
syntax.
The version of libtool used by HDF5 isn't directly affected by the reconfigure
script; instead, libtoolize --force must be used by hand. Libtool was the
source of the problem, so rolling its version back to 1.5.14 should solve the
issue (at least temporarily).
Reconfigure should still work on both heping and kagiso.
Tested on heping, kagiso, and tg-login3.
Should disable linking against shared libraries in Fortran for compilers that
don't support shared libraries.
Should also fix problem when the wrong Fortran file extension was specified.
If these changes don't solve the Daily Test issues, I'll look at backing out
the autotool version change until I have time to fix them.
Tested on heping, kagiso, juniper.
Refactor generic property list initialization code to put property list
specific routines in property list modules, instead of scattered to the four
winds. Also, introduce property list class initialization objects, to make
adding new property list classes in the library easier.
Fix daily test failure by using H5Pget_elink_prefix() API routine instead
of looking at the "raw" generic property list information.
Tested on:
Mac OS X/32 10.4.8 (amazon)
FreeBSD/32 4.11 (sleipnir) w/threadsafe
Linux/32 2.4 (heping) w/C++ & FORTRAN
Linux/64 2.4 (mir) w/build-all & 1.6 compat
Skipped until fix is found.
Tested on heping with pgf90.
Note: Logic was wrong; as a result, the test was bypassed for all
compilers except those (like Intel) that understand !DEC compiler directive.
I confirmed that the test fails on heping with pgf90. The symptoms are the same:
1.6.5 h5dump can read multi files created by fortran test,
but built h5dump fails with internal error.
--This line, and those below, will be ignored--
M test/fortranlib_test.f90
Daily tests failed for Absoft f95 compiler
Solution:
Failure was due to several typos in H5f90prpto.h file; fixed
I also removed redundant flags from the configration files.
Platforms tested: heping with f95, g95, pgf90; pommier with f95
Previous implementation failed to compile on MAC OS X Tiger 10.4 and AIX 5.2
In previous implementation, each overloaded Fortran function called the same
C function. Since declaration of parameters in INTERFACE block for
C Function differed, some compilers issued warnings but g95 on MAC and AIX
failed to compile.
Solution: Add C wrappers corresponding to each overloaded Fortran function
to call C stub function. This fix should also reduce number of warnings
on IRIX systems.
Platforms tested: MAC OS and AIX 5.2 (copper) with g95;
sol (with Sun compilers), heping with PGI compilers
and quote its arguments. Also checks for the 'socket' library on
Solaris.
If this patch passes the Daily Tests and makes the user happy, I'll
port it back to the 1.6 branch.
Tested on mir and sol.
File format is not stable, don't keep files produced!
Description:
First stage of checkins modifying the format of groups to support creation
order. Implement "dense" storage for links in groups.
Try to clarify some of the symbols for the H5L API.
Add the H5Pset_latest_format() flag for FAPLs, to choose to use the newest
file format options (including "dense" link storage in groups)
Add the H5Pset_track_creation_order() flag for GCPLs, to enable creation
order tracking in groups (although no index on creation order yet).
Remove --enable-group-revision configure flag, as file format issues are
now handled in a backwardly/forwardly compatible way.
Clean up lots of compiler warnings and other minor formatting issues.
Tested on:
FreeBSD/32 4.11 (sleipnir) w/threadsafe
Linux/32 2.4 (heping) w/FORTRAN & C++
Linux/64 2.4 (mir) w/enable-v1.6 compa
Mac OSX/32 10.4.8 (amazon)
AIX 5.3 (copper) w/parallel & FORTRAN
Since these examples need to follow filesystem paths, the Makefiles need
to create directories in the examples directory; added this to the
Makefile.am.
Tested on Windows, mir, juniper
"make check-vfd" will now run all tests in the test directory with different
file drivers (at least, all of those tests that use the testing framework's
FAPL). Tests that fail will be skipped.
This is not a perfect fix, but is better than nothing.
Along with this change, check-vfd should be added to the Daily Tests.
Feature
Description:
Revised Link APIs.
Solution:
New link APIs use H5L*
H5*create_expand do not create links to the objects created; this must
be done manually with H5Llink.
Added APIs to link an object given its ID (H5Llink), to copy links (H5Lcopy),
and changed creation APIs (H5Lcreate_hard and H5Lcreate_soft) and query
API (H5Lget_linkinfo instead of H5Gget_objinfo).
All old APIs are still supported in H5Gdeprec.c .
Platforms tested:
sol, mir, copper
Misc. update:
Forgot to update MANIFEST and release docs. Will do after checkin.
Code cleanup
Description:
Trim trailing whitespace in Makefile.am and C/C++ source files to make
diffing changes easier.
Platforms tested:
None necessary, whitespace only change
Configuration feature
Description:
'make install' now tests both static and shared libraries if both are installed.
Solution:
Previously, shared libraries were only tested when static libraries were not installed.
Also cleaned up line in commence.am that was including HL library in all Makefiles.
Platforms tested:
mir (Makefile change only)
Bug fix - bugzilla #552
Description:
On Cray X1, trying to use : as an argument confused the system.
Solution:
Added a test in configure to see if : as an argument is bad.
If so, skipped the test.
Platforms tested:
mir, Cray X1 (change to configure only)
Bug fix
Description:
tg-login was having an error about H5match_types.Tpo being missing.
Solution:
tg-login was trying to build H5_match_types twice at the same time and
becoming confused as a result.
Massaged the dependencies in the Makefile.am to prevent this.
Platforms tested:
mir, sol, tg-login
Bug fix.
Description:
The ${TR}, though avoid the error, is inconvenient. It is needed
because configure.in use the char range in the style of 'a-z'.
The other style of '[a-z]' is more commonly accepted by all tr
but autoconf tends to strip away [], making the syntax rather
clumsy.
Solution:
Learned from autoconf that it avoids the use of character range
by just spell all the letters out. Changed our tr commands to
use those variables defined by autoconf. Also removed the
definition of ${TR} since it will cause inconsistancy when
autoconf also use plain 'tr' in its generated code.
The Makefile.in are changed because the elimination of ${TR} from
configure triggered its removal from all Makefil.in. That is okay
because ${TR} is not used at all in Makefile.
Platforms tested:
h5committested. (sol failed to connected). also tested in shanti
using both /usr/ucb/tr and /bin/tr (the bad one before.)
Misc. update:
Updated both INSTALL and RELEASE files.
Description: When --enable-group-revision flag was used, h5fget_filesize_f
function returned different value from expected one. Test failed
with false negative result.
Solution: Added Fortran function h5_group_revision_f and its
C stub to check if macro H5_GROUP_REVISION is defined.
Expected value from h5fget_filesize_f is set up accordingly.
Platforms tested: copper, shanti and heping with and without
--enable-group-revision configuration flag
Misc. update:
Several bug fixes
Description:
Added config file for Cray X1 (previous file was misnamed)
Simplified some code in hyperslab.c test that seemed to have been
confusing compiler on Cray X1.
Fixed typo in config/commence.am
Cleaned up hl/src/Makefile.am
Solution:
All four fixes should be straightforward. The failure on Cray was
very difficult to debug, but involved arithmetic errors.
This change seems to fix it.
Platforms tested:
heping, copper, sol, some Cray X1 (more testing when system comes back up)
Description: H5match_types uses reserved "INT" string and writes it
to the H5H5fortran_types.f90 file. If application uses
Fortran intrinsic INT and HDF5, compilation fails since
it becomes redefined in H5H5fortran_types.f90.
Solution: Rename INT to Fortran_INTEGER
Platforms tested: copper, shanti, heping with g95
Misc. update:
Description: file_close and multi driver tests fail on VMS.
Solution: IFDEF'ed them for now with !DEC directive.
Platforms tested: VMS server, heping
Misc. update:
new feature
Description:
1) separated the HL library into "public" and "private" header files, with the same caracteristics as the basic library
2) added the public headers to hdf5.h (with a conditional include macro, defined in configure.in)
3) added the path to HL in all Makefile.am 's , because of the inclusion in hdf5.h
Solution:
Platforms tested:
linux 32, 64
AIX
solaris
with fortran and c++
(one packet table example fails)
Misc. update:
Code cleanup
Description:
Tweak fortran test for alpha release to check for different file size
(a size difference between the compact & "old" dense form).
Platforms tested:
FreeBSD 4.11 (sleipnir)
Linux 2.4 32-bit (heping)
Linux 2.4 64-bit (mir)
Solaris 2.9 (shanti)
Misc. update:
Bug fix
Description:
Previous checkin did a bad thing; 'make clean' failed in example directories.
Solution:
Fixed commence.am so that examples no longer break, and fixed a mistake
in conclude.am.
Platforms tested:
heping (minor makefile change)
Misc. update:
Bug fix
Description:
make check-clean didn't clean results of example tests
Solution:
Fixed Makefiles so that check-clean recurses into example directories.
Also a little Makefile cleanup.
Platforms tested:
mir, modi4, heping, copper
Description: defined H5_FC_FUNC_(name, NAME) for VMS since we cannot
run autoconf on that system
Solution: Used append methos to form the string; this may become the change
for all platforms after more testing
Platforms tested: heping, VMS server
Misc. update:
Added high-level example directories
Description:
Refactored common code out of examples Makefiles.am, added high-level
example directories, added packet table examples.
Solution:
Examples now draw from a common config/examples.am file, which
contains rules for installing, uninstalling, and cleaning examples.
High-level example directories are mostly empty, except for the
C and C++ packet table tests.
Platforms tested:
mir, sleipnir, copper, shanti
Bug fix
Description:
Change unsigned index variable to signed index variable (again), to fix
error introduced with last Windows warnings cleanup.
Platforms tested:
Linux 2.4 (heping) w/FORTRAN
Too minor to require h5committest
Code cleanup
Description:
Fix a bunch of warnings flagged by Windows compilers.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
New feature
Description:
Add in a combination of Peter's & my code to support copying
variable-length data from one file to another, although currently only
supported with contiguous data storage.
Platforms tested:
FreeBSD 4.11 (sleipnir)
h5committest
Bug fix
Description:
Fortran type generation was broken in two ways. Fixed both.
Solution:
Firstly, there were a couple of path problems. Fixed a typo and
specified the full path of a file.
Secondly, the dependencies weren't right when building with HDF5-specific
commands (make lib, make check-s, etc.). Tweaked dependencies
to fix the problem.
Platforms tested:
mir, modi4, sleipnir
Configure feature
Description:
Added 'make trace' target.
Solution:
Added tracing to 1.7. This was done automatically in 1.6, but left out
of 1.7 until now (oops!).
Tracing in 1.7 only happens manually, when the user types 'make trace.'
Tracing automatically requires more framework than it's worth.
I also fixed a couple of tracing bugs and ran trace.
Platforms tested:
mir, sleipnir, modi4
Misc. update:
Bug fix
Description:
Before this checkin, 'gmake check-s' would fail if there was a file in
the current directory named 'check-s'.
This is fixed under gmake (not sure how to fix for other makes).
Solution:
check, progs, install, etc. are what gmake calls "phony" targets,
which means that no file should be created. These targets can be
specified by a line of the form
.PHONY: check progs install ...
Automake adds this line for targets it knows about, but HDF5 has a
lot of custom rules. This checkin adds a .PHONY line for those rules.
I believe that only gmake recognizes the .PHONY line (at least, pmake
doesn't seem to), but a partial solution is better than none.
This error should occur very rarely anyway (the user has to manually
create files with names like 'build-check-s' or '_test').
Platforms tested:
mir, sleipnir, modi4
New feature
Description:
Check in baseline for compact group revisions, which radically revises the
source code for managing groups and object headers.
WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!!
WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!!
This initiates the "unstable" phase of the 1.7.x branch, leading up
to the 1.8.0 release. Please test this code, but do _NOT_ keep files created
with it - the format will change again before the release and you will not
be able to read your old files!!!
WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!!
WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!!
Solution:
There's too many changes to really describe them all, but some of them
include:
- Stop abusing the H5G_entry_t structure and split it into two separate
structures for non-symbol table node use within the library: H5O_loc_t
for object locations in a file and H5G_name_t to store the path to
an opened object. H5G_entry_t is now only used for storing symbol
table entries on disk.
- Retire H5G_namei() in favor of a more general mechanism for traversing
group paths and issuing callbacks on objects located. This gets us out
of the business of hacking H5G_namei() for new features, generally.
- Revised H5O* routines to take a H5O_loc_t instead of H5G_entry_t
- Lots more...
Platforms tested:
h5committested and maybe another dozen configurations.... :-)
Bug fix
Description:
Fixed a bug when using h5fc and h5c++ with static libraries.
Added high-level C++ and Fortran libraries to h5c++ and h5fc.
Solution:
Platforms tested:
mir, heping, shanti, sleipnir
Bug fix/feature
Description:
Added support for -shlib in h5fc and h5c++.
Made check-install use -shlib when only shared libraries have been installed.
Solution:
h5fc and h5c++ didn't recognize -shlib. Stole code from h5cc to link against
shared libraries.
When static libraries are disabled, the examples Makefiles will automatically
use the -shlib option to link against shared libraries. Thus,
--disable-static and make check-install should work together.
Platforms tested:
heping(disable-static, enable-static, fortran, c++), modi4 (disable-static, fortran, c++, parallel, enable-static)
Bug fix
Description:
Failed parallel tests now cause make to exit with an error.
Solution:
Edited config/conclude.am to throw an error if parallel test programs fail.
Platforms tested:
heping, modi4
Bug fix
Description:
Changed configure.in to use an environment variable TR to set the path
to the tr utility.
Solution:
There are two kind of tr on Solaris with slightly different syntax.
HDF5's configure relies on the "standard" tr. Traditionally, HDF5ers
have needed to make sure that the "right" tr was found before the
wrong one in their path; now they can use an environment variable.
Platforms tested:
mir, shanti, sol
Misc. update:
Forgot to update release notes. Off to do that now.
Makefile bug fix
Description:
Previously, automake didn't output rules to build perform/mpi-perf or
the test/gen_* programs.
Now these can be built by typing 'make mpi-perf' (or 'make foo') or by
configuring with --enable-build-all.
Solution:
Automake doesn't like having rules for programs it doesn't build. Tricked
it by having these programs built "sometimes"--whenever the user enables
--build-all. This should be used mostly for testing and to ensure that
these helper programs compile.
***IMPORTANT***
These programs do *not* currently compile. When --enable-build-all is used
(not the default), gen_new_fill fails because it uses an old API. This is
an existing "bug" that has simply been exposed by this checkin.
Platforms tested:
sleipnir, modi4, sol
Misc. update:
Bug fix.
Description:
mpich2 using f95 did not support function 'unlink'.
Removed the unlink call for now. Need a better solution.
Platforms tested:
heping using mpich and mpich2 versions of mpif90.
Misc. update:
bug fix.
Description:
When a parallel test script test fails, make would continue because the
way it was setup inside a for loop. Fixed it by issuing an exit 1 inside
the loop.
There was also a typo error in the newer command comparision that it
must be $${chkname} in order to be valid. Also, the test script itself
was not checked in the newer lists. All fixed.
Platforms tested:
h5committested and also hand tested in heping pp mode.
Purpose: Typo fix
Description: Declaration of long double variable was after executable
statement. Many compilers choked ;-(
Solution: Declare variable before the first executable statement
Platforms tested: shanti (compilation only), copper (tests passed)
Misc. update:
New feature.
Description:
Added the time command to the make check target to report time usage
of the execute of each test and test scripts. This gives us some idea
how long each test takes and some vague idea it is compute bound or
not.
powerpc-ibm-aix5.x:
Change $RUNPARALLEL default setting to allow it being invoked by the
time command.
Platforms tested:
h5committested.
Description:
Fortran multi_file test failed on SX-6. It turned out that compiler
could not handle (long long HADDR_MAX) * ( float var). The result of this
operation was 0.
Solution:
Introduced long double variable to store the value of HADDR_MAX
and use the new variable in * operation. (Suggested by John)
Platforms tested: SX-6, mir with PGI compilers; a very minor change
Misc. update:
Description: Fortran array was passed directly to a C function. Since
size of fortran INTEGER is bigger than size
of C int on SX-6 with -ew switch, the passed data was wrong.
Solution: Copy Fortran array to the appropriate C array.
Platforms tested: SX-6 ; trivial change
Misc. update:
Feature
Description:
Added H5_CFLAGS, etc. to 1.7 branch.
Now compilation flags can be put in H5_*FLAGS and they'll be used when
building hdf5 but not in h5cc.
Platforms tested:
mir, sleipnir, modi4
Misc. update:
Bug fix
Description:
Disabled C++ shared libraries for Sun Workshop compiler.
Solution:
This bug only seems to happen when using the -xarch=v9 flag to compile in
64-bit mode, but disabling shared libraries entirely for this compiler is
an easier fix (I don't know how to detect 64 bit mode from the command line).
The framework for disabling shared libraries for other C++ compilers is
in place.
Platforms tested:
sol, mir, sleipnir, modi4
Bug fix/feature
Description:
Disabled shared libraries for a number of Fortran compilers that don't
support them.
This allows other compilers to support shared Fortran libraries.
Solution:
Added a conditional, SHARED_FORTRAN_CONDITIONAL, which is true if
Fortran supports shared libraries. It is set in configure.in.
Platforms tested:
mir, sleipnir, colonelk, heping
Bug fix
Description:
Building with --disable-static seems to have been broken on several platforms.
Fixed this.
Configure will now disable shared libraries automatically when using pgf90
or when building on Cygwin.
Solution:
To avoid errors when using shared libraries with pgf90 (which I had not
realized were compiler-specific), I had manually set convenience libraries
to use the -static linking flag. Apparently, this is not necessary, and
caused these libraries to be created as empty archives when --disable-static
was used.
Also, some libraries were including other libraries, which was not
necessary.
I also fixed code in configure.in to correctly detect whether shared
or static libraries are enabled, and moved code that disables shared libraries
to before libtool is created (rather than editing libtool after the fact).
Despite repeated warnings that only one shared library can be linked at a
time, I have yet to have shared libraries break the linking of tests on
any system. We'll see if the Daily Tests turn up anything.
Platforms tested:
mir (fortran, C++), sleipnir (C++), modi4 (fortran, C++, parallel),
sol (fortran, C++), cygwin
Bug fix
Description:
Recent group code changes tweaked the size of the free space in the file
for this test. Update to the latest correct value.
Platforms tested:
h5committested
Description: Added support for "big" REAL and DOUBLE PRECISION
datatypes (i.e. sizes of Fortran real and double precision
may be 8 and/or 16 bytes; usually specified by compilers
flags like -r8, -r16, -d8, etc.)
Solution: Added code to generate all necessary datatypes on a fly.
Platforms tested: heping with g95 (-r8, -d8)
mir with ifc (-r16, -r8)
Note: multi file test failed when REAL is 128 bit.
I will address this later.
Misc. update:
Description: Added code to generate sizes of Fortran REAL and
DOUBLE PRECISION types. This will "almost" eliminate
H5f90i.h file that defines C stubs datatypes.
Solution:
Platforms tested: heping with g95 (-r8, -d8 and default settings)
Misc. update:
Description: Currently we are trying to match excatly Fortran and C types.
Unfortunately, some systems (SX-6) provide compiler switches
(-ew) that make ALL Fortran types to be at least of size 8.
As a result, Fortran library cannot be compiled.
Solution: Allow INTEGER(HID_T) type to be 8 bytes if necessary. The values
of this type are originated in the C library and can be safely
passed back and forth. Please note that we cannot do the same
for INTEGER(SIZE_T) type. Fortunately there is a switch
that allows size_t be 8 bytes for both C and Fortran compilers.
Platforms tested: It is a minor change, therefore SX-6 only;
daily tests will do the rest :-)
Misc. update:
Bug fix
Description:
Errors on sol may have been due to "make clean" being run both
manually and by automake. Removed the manual run.
Also cleaned c++/examples/ii_files directory created by some compilers
(e.g., on modi4).
Solution:
This does mean that examples directories will not be cleaned by
'make clean'.
Platforms tested:
sol, mir, heping, modi4
tidy up.
Description:
MPE option created *.clog file whenever it is executed in MPI.
The cleanup of *.clog files were done in individual Makefile.in.
Often, it is forgotten.
Solution:
Moved the cleaning of *.clog files to CHECK_CLEANFILES in commence.am
so that it is applied whenever check-clean is called.
Platforms tested:
heping pp using MPE.
Bug fixes
Description:
This checkin fixes an occasional error on kelgia on sol during distclean.
It also causes test scripts to depend properly on the programs they're
supposed to be testing.
Solution:
The kelgia bug was due to some files being cleaned by automake and manually.
Removed the manual cleaning in src/Makefile.am.
Test script dependencies now need to be specified manually, since the
makefile can't guess what they test from their name. Currently all test
scripts in a given directory have a single list of dependencies--this was
easy and seems to be sufficient.
These dependencies are listed in the SCRIPT_DEPEND variable in the Makefile.am.
Platforms tested:
heping, mir, modi4, sol
Misc. update:
minor tidy up.
Description:
Changed both test programs and test scripts to use the same suffixes
(.chkexe and .chklog). Changed from .log to .chklog to avoid running
into potential conflicts by other "things" (e.g., config.log).
Tested:
Heping.
Code cleanup
Description:
Trim trailing whitespace, which is making 'diff'ing the two branches
difficult.
Solution:
Ran this script in each directory:
foreach f (*.[ch] *.cpp)
sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f
end
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
Bug fix and improvement.
Description:
The test output were not displayed for parallel tests.
The serial tests output were always displayed whether the test was
actually ran this time or not.
Solution:
Moved the display of test output inside the target where the actual
tests are run.
Platforms tested:
Tested in heping using pp and fortran.
Bug fix and code minor cleanup.
Description:
The attempt to redirect stderr together to the log files were
done in the wrong order such that stderr output goes to where
stdout WAS. Fixed that.
Code minor cleanup--use shell variables to hold the name of the
log file and the test instead of generating them repeatedly. This
makes easier code reading, less crowded and avoid typos.
Only conclude.in is changed. The Makefile.in changes are all
derived from automake.
Platforms tested:
h5committested.
bug fix.
Description:
Fortran test, fflush2, depends on a file created by fflush1.
Fixed Makefile to reflect such a dependency.
Platforms tested:
heping.
bug fix.
Description:
test program used fortran STOP to end the program even when there
was an error. STOP does not exit with non-zero. Therefore, make
or other programs could not detect an error has occurred.
Solution:
Wherever it is appropirate, replace STOP with h5_exit_f statments.
Platforms tested:
Tested in heping.
Makefile feature
Description:
'make check-clean' now cleans *.h5 files created by tests as well as
.log and .chkexe files.
Solution:
check-clean is now a separate target in its own right, which cleans less
than mostlyclean (check-clean < mostlyclean < clean < distclean).
Platforms tested:
mir, heping, modi4 (serial and parallel)
Feature: check-clean target
Description:
'make check-clean' cleans up output files from tests.
Solution:
Tests create foo.chkexe and foo.log files. Scripts create foo.chksh and
foo.logsh files. 'make check-clean' will clean these files up so that
the tests can be re-run.
Also suppressed some not-very-useful output of Makefiles when it would
echo commands.
Platforms tested:
mir, sleipnir, modi4
Misc. update:
Configuration feature
Description:
Serial test output is now stored in log files and printed when all tests
in a directory complete, or when a test fails. This should make test output
more readable and useful.
Also made changes to clean up ii_files directories that are created by some
C++ compilers/linkers.
Also fixed a few minor Makefile bugs.
Solution:
When serial tests run, their output is saved in *.log or *.logsh. While
running, tests only print when they begin and when they complete; their
more specific output (from the log file) is printed if the test fails or
when all tests have completed.
Comments welcome.
Platforms tested:
mir, modi4 (parallel and serial), copper, shanti
Bug fixes
Description:
A number of minor changes to Makefiles. Some files will now be cleaned
properly, some comments are more informative, etc.
Platforms tested:
heping, mir, modi4
bug fix
Description:
rwdsetexample and attrexample both modify the same file created by
dsetexample. Need to serialize all three of them.
Platforms tested:
Did 50 times of make check in fortran/examples. It used to fail
at least once. Now it does not fail.
Bug fix
Description:
The ".chksh" file for a test script was being created in the "source"
location rather than the build location. This can cause problems when
multiple builds are running because "slower" machines will see the ".cshsh"
file from faster machines and will not run the test script as they should.
Solution:
Use 'basename' command to strip off the path of the script and create
the ".chksh" file in the build location.
Platforms tested:
FreeBSD 4.11 (sleipnir)
h5committest
bug fix.
Description:
-nt is not a universal option for the test command in all platforms.
The use of it in conclude.am cause some platforms to bark at the
Makefile generated.
Solution:
Created a command script bin/newer which tests if file1 is newer
than file2. Replace the "test file1 -nt file2" by
"newer file1 file2".
Platforms tested:
Tested in sol.
Bug fix
Description:
Fixed error in Fortran examples on modi4.
Solution:
Added another dependency in the Fortran examples.
Platforms tested:
mir, modi4 (serial and parallel)
Bug fix
Description:
Added dependencies to examples Makefiles so that examples can be run in
parallel.
Solution:
The examples directories (for C, C++, and Fortran) all have some dependencies
explicitly spelled out in their Makefiles.am. This is a good short-term
solution, and should prevent errors in the Daily Tests.
Platforms tested:
mir, modi4 (parallel and sequential)
Bug fix
Description:
Fixed bugs that caused tests to be unable to find testhdf5.sh during
daily tests, and another that broke sol and shanti.
Solution:
When tests are run, their path is ./$testname .
When scripts are run, their path has no leading "./". Fixed.
Sol and shanti don't recognize the -e option for test, but they do know
-f. Fixed.
Also modified release notes.
Platforms tested:
mir, shanti, heping
Feature: tests now use parallel make and only run once
Description:
When make is invoked in parallel (using the -j option), several tests will
now be run simultaneously. This should speed up testing on a number of
systems.
When a test passes, it creates a foo.chkexe or foo.chksh file, which prevents
the test from running again unless the test or library changes.
Solution:
Most of the changes live in config/conclude.am. Added *.chkexe and *.chksh
files to the list of files to be cleaned at "make mostlyclean" time.
Parallel tests still run one at a time, but use the same make instructions
as serial tests.
Platforms tested:
mir, eirene, sleipnir, pommier, copper, modi4 (some errors occurred, probably
due to the test being run before updating hdf5. Will re-run tests after
checkin.)
Description: "long long" type caused compilation problems on Windows
Solution: Use long_long definition
Platforms tested: heping, Windows will follow
Misc. update:
Description:
When compiler flag was used to set the size of Fortran integer
to 8 bytes, library would fail.
Solution:
Cleaned up the code; added detection of Fortran INTEGER type size
and appropriately defined int_f type for C-stubs routines.
Platforms tested:
Solaris 2.8 32 and 64-bit, AIX 5.1 64-bit parallel
PGI Fortran with -i8 flag on heping
Absoft Fortran with -i8 flag on heping
g95 on mir (Fortran integer is 8 bytes by default that cannot be
changed - compiler bug ;-)
AIX Fortran with -qintsize=8 32 and 64-bit modes on copper
Misc. update:
Bug fix
Description:
H5test_kind.f90 had an error when being compiled by pgf90.
Solution:
A variable wasn't declared. Declared it to fix the bug.
Platforms tested:
heping, mir
Bug fix/improvement
Description:
Added another step to fortran type detection. This should help on some
bizarre platforms.
Solution:
Formerly, H5fortran_detect.f90 was included in the distribution. Now
it is generated by H5test_kind.f90 (written by Elena).
Platforms tested:
verbena, modi4, copper
Bug fix
Description:
Fortran type detection failed on Cygwin. This is because executables
in Cygwin have the .exe extension, which confused dependencies in
the Makefile.
Solution:
Sprinkled the $(EXEEXT) variable liberally about the fortran/src
Makefile.am. This variable is set at configure time and will
be ".exe" on Cygwin and stay "" on Linux.
Platforms tested:
Cygwin, modi4, mir
bug fix
Description:
check-s and check-p were set as pre-requistics of test. They
would get executed in parallel if parallel make is used. This
could cause problems since serial tests are used to be executed
before parallel tests. It is not known if it is always okay to
run serial and parallel tests in simultantously.
Solution:
Change check-s and check-p as actions of the target test so
that they get executed sequnentially.
Platforms tested:
heping PP.
Added check-s and check-p targets.
Description:
Added check-s and check-p targets to 1.7 branch to match changes to 1.6
branch. Now parallel and serial tests can be run separately.
Platforms tested:
mir, modi4, copper
Bug fix
Description:
Fortran tests failed because UTF-8 character set flag wasn't initialized
properly.
Solution:
Elena showed me where the flags needs to be initialized. Problem solved.
Platforms tested:
heping, copper, modi4
new fortran parallel test
Description:
added a test that writes and reads several datasets
Solution:
Platforms tested:
linux (intel compiler, tungsten)
AIX (copper)
Misc. update:
Feature
Description:
Added "support" for UTF-8 character encoding.
Solution:
Wrote tests to check that UTF-8 can be used in a number of places in
HDF5 (object names, data, etc.). These tests live in test/tunicode.c.
Added a new UTF-8 character encoding for datatypes.
Platforms tested:
mir, modi4, heping
Misc. update:
Code cleanup
Description:
fortran/src/H5f90i.h used to define different fortran types for every
compiler. Now it only defines three things, and they are the
same for every platform but one.
Solution:
Eliminate duplicate definitions; now there are only two cases
("UNICOS" and "everything else").
This should also let the HDF5 Fortran compile anywhere, even on
unknown platforms.
Platforms tested:
mir, pommier, modi4, copper, Cray X1 (in progress)
Cray X1 Port
Description:
Porting 1.7 branch to Cray X1. With these changes, HDF5 builds, but
there are some errors in the tests. Working on the errors.
Solution:
Added nv1-cray file to config directory.
Cleaned up some code in hl/c++ that was causing compiler to complain.
Platforms tested:
Cray X1, mir, sleipnir
Misc. update:
bug fix
Description:
some lines were longer that 132 characters (the "official" max lenght of a line in F95)
the g95 compiler complained about it
Solution:
reduce the line lenght
Platforms tested:
linux (g95, intel)
Misc. update:
bug fix
Description:
the hdf5 file of the test was being generated on the NFS filesystem
Solution:
use the libtest function h5_fixname
Platforms tested:
Linux
Misc. update:
added new fortran parallel tests that replace the old ones
Description:
this first set of tests do a write/read by hyperslabs
Solution:
Platforms tested:
Linux (heping) PGI compiler
Linux (heping) Intel compiler
AIX (copper) IBM compiler
SGI Altix (cobalt) Intel compiler
Xeon Linux cluster (tungsten) Intel compiler
Misc. update:
Purpose:
Bug fix
Description:
Some platforms (Windows) don't have the long long type, which causes automatic
Fortran type matching to fail.
A solution is to use HDF5's long_long type.
Solution:
Changed H5match_types.c to use long_long type. Moved definition
of long_long out of H5private.h and into H5public.h.
Platforms tested:
mir, copper, pommier
Bug fix
Description:
Made High-Level Fortran code use automatically generated headers
rather than a separate hardcoded header.
Solution:
Set hdf5/hl/fortran/src to include hdf5/fortran/src, so that it
will find the copy of H5f90i.h in that directory.
Took #include "H5private.h" out of H5f90i.h (and moved it to files
that included H5f90i.h.
Platforms tested:
mir, modi4, pommier
