Commit Graph

19221 Commits

Author SHA1 Message Date
Allen Byrne
648a21473f Use correct values for other file versions 2019-02-08 21:38:39 -06:00
Allen Byrne
d0be2f5840 CMake script changes to simplify execution 2019-02-08 10:48:49 -06:00
Quincey Koziol
4300ca6234 Merge pull request #1528 in HDFFV/hdf5 from add_id_type_to_vol_wrap_cb to develop
* commit '163dcebec5d853b720dcb64b5e9828670b963773':
  Add ID type (of eventual hid_t) to the VOL "wrap" callback.
2019-02-07 16:20:26 -06:00
Jordan Henderson
0d1d61951f Merge pull request #1527 in HDFFV/hdf5 from ~JHENDERSON/hdf5_merge:develop to develop
* commit '28b9af4f28df6c0e4f7fbf1ce4a0f50e1797b4d3':
  Fix test issue in testpar/t_dset.c with MPI-2 implementations
2019-02-07 15:11:58 -06:00
Jordan Henderson
28b9af4f28 Fix test issue in testpar/t_dset.c with MPI-2 implementations 2019-02-07 14:31:32 -06:00
Quincey Koziol
163dcebec5 Add ID type (of eventual hid_t) to the VOL "wrap" callback. 2019-02-07 14:31:26 -06:00
Allen Byrne
865e35ea01 Merge pull request #1524 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '36e3d1600a3f9d771cfb9b4475f23c57d4b10280':
  Refactor out timeout values
  Correct name of variable
  Remove F2003 Option and references
  Remove obsolete file
  Update examples version
  Update to example reference version
  Switch OFF if compression source is not available
  Fail configure if SZIP/ZLIB is requested but not found
2019-02-07 12:07:26 -06:00
Allen Byrne
36e3d1600a Refactor out timeout values 2019-02-06 16:41:58 -06:00
Allen Byrne
5ba4266a04 Correct name of variable 2019-02-06 11:02:16 -06:00
Vailin Choi
c7977ec2f8 Merge pull request #1522 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to develop
* commit '7f5741825db0737db5ac46c43009681508a73002':
  Add release notes information.
  Modification based on feedback from pull request.
  Modification based on feedback from pull request.
  There is performance issue when closing an object.  The slow down is due to the search of the "tag_list" to find out the "corked" status of an object. The fix: (1)  Add a counter "num_objs_corked" in the cache structure to track the number of "corked" objects. (2) Skip the search of "tag_list" if the counter is zero i.e. no "corked" objects.
2019-02-06 10:49:51 -06:00
Vailin Choi
7f5741825d Add release notes information. 2019-02-06 10:48:30 -06:00
Allen Byrne
e73197077b Remove F2003 Option and references 2019-02-06 10:10:46 -06:00
Allen Byrne
3ebfd7edd4 Remove obsolete file 2019-02-06 08:45:59 -06:00
Allen Byrne
a476f5348e Update examples version 2019-02-06 08:38:55 -06:00
Allen Byrne
ee9771425f Update to example reference version 2019-02-06 08:37:11 -06:00
Vailin Choi
7d124cb796 Modification based on feedback from pull request. 2019-02-05 18:13:11 -06:00
Vailin Choi
e272e64e74 Modification based on feedback from pull request. 2019-02-05 17:04:04 -06:00
Allen Byrne
abd74c8310 Switch OFF if compression source is not available 2019-02-05 15:44:38 -06:00
Allen Byrne
18e875f75f Fail configure if SZIP/ZLIB is requested but not found 2019-02-05 15:25:30 -06:00
Vailin Choi
34f028070e Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~vchoi/my_hdf5_fork into develop 2019-02-04 22:51:57 -06:00
Vailin Choi
7f718e9ea2 There is performance issue when closing an object. The slow down is due to the search of
the "tag_list" to find out the "corked" status of an object.
The fix:
(1)  Add a counter "num_objs_corked" in the cache structure to track the number
of "corked" objects.
(2) Skip the search of "tag_list" if the counter is zero i.e. no "corked" objects.
2019-02-04 22:30:48 -06:00
Dana Robinson
c7d04ee3af Merge pull request #1520 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:cmake_tweaks to develop
* commit '91c7ff81dcac1af7a7b609698aa69f0c213a6184':
  Added a line for the CMake pread/write option to INSTALL_CMake.txt.
2019-02-04 12:43:25 -06:00
Dana Robinson
91c7ff81dc Added a line for the CMake pread/write option to INSTALL_CMake.txt. 2019-02-04 10:11:59 -08:00
Larry Knox
08001e2f3f Merge pull request #1518 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit '6c2a4b728f3c8eadb18d4e10d41bdbd7d1c8f3e8':
  Add LOCAL_BATCH_SCRIPT_ARG variable for submitting account information and other batch command variations with ctest command.
  Add batchscript options that work when running ctest directly.
2019-02-04 08:48:55 -06:00
Larry Knox
6c2a4b728f Add LOCAL_BATCH_SCRIPT_ARG variable for submitting account information
and other batch command variations with ctest command.
2019-02-04 08:46:57 -06:00
Larry Knox
d2624dae03 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~lrknox/hdf5_lrk into develop 2019-02-03 21:34:25 -06:00
Larry Knox
dddc940bdf Add batchscript options that work when running ctest directly. 2019-02-03 21:33:16 -06:00
Larry Knox
30df67700c Merge pull request #1517 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit 'c348d453b583ec9092152e6aef1f7fa9854cf5d9':
  Correct H5DIFF to PH5DIFF in *ctestS.sl.in.cmake list of parallel tests reserved for *ctestP.sl.cmake. Revise options to run batch tests and alternative options for cross compile in HPC/*-HDF5options.cmake.
  Change examples file to zip for CMake zip file.
  Update bin/release for filename changes and HPC-CMake tar file corrections.
  Add new files to MANIFEST. Update permissions for raybsub to 755.
2019-02-02 22:45:55 -06:00
Larry Knox
c348d453b5 Correct H5DIFF to PH5DIFF in *ctestS.sl.in.cmake list of parallel tests
reserved for *ctestP.sl.cmake.
Revise options to run batch tests and alternative options for cross
compile in HPC/*-HDF5options.cmake.
2019-02-02 08:02:48 -06:00
Dana Robinson
2d4f58adf0 Merge pull request #1515 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:pread_vfd_squash to develop
* commit '055208b71c573be3d4b1047b840d4d8b255bc25e':
  Minor tweak to CMake preadwrite entry.
  Updated sec2, log, and core VFDs to use pread/pwrite when available (can be controlled via a configure/CMake option)
2019-02-01 16:01:22 -06:00
Dana Robinson
055208b71c Minor tweak to CMake preadwrite entry. 2019-02-01 13:23:54 -08:00
Dana Robinson
f90e5bdc62 Merge pull request #1516 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:valgrind_fixes to develop
* commit '5f1f231310bcb3278f11a51e1ea47782f6ee3235':
  Updated H5Dio.c comment.
  Fixed a valgrind issue with the unprotect log message. The logging call was placed after the point where the cache entry was freed. The fix was to just use the entry's address directly in the log call instead of the entry itself.
  Fixed a bug revealed by the dtransform test. A datatype transform buffer needed to be calloc'd.
2019-02-01 15:14:15 -06:00
Dana Robinson
5f1f231310 Updated H5Dio.c comment. 2019-02-01 13:12:39 -08:00
Larry Knox
cc7ce0eb8b Change examples file to zip for CMake zip file. 2019-02-01 12:19:28 -06:00
Larry Knox
eb84f922c8 Update bin/release for filename changes and HPC-CMake tar file
corrections.
2019-02-01 10:21:53 -06:00
Larry Knox
5352bf4971 Add new files to MANIFEST.
Update permissions for raybsub to 755.
2019-02-01 08:57:52 -06:00
Larry Knox
b0e202a206 Merge pull request #1508 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit 'bae744199b69eb7c3f5eda2441cca30cb8c6175f':
  Add more specific batch scripts. Add script raybsub to handle submitting .lsf files on ray with bsub < script.lsf syntax that we couldn't handle with CMake. Add hpc-cmake-tgz option for bin/release.
  Account info can be submitted as an argument to run the batch scripts. Special versions for sandia are not needed.
  Add HDF5options.cmake files for serial and parallel tests on HPC machines (where tests are to be run as batch jobs. Add README_HPC file with instructions for setting up configuration to use batch scripts for running tests on HPC machines and some pointers for cross compiling.
  Remove knl configuration from ctestS.sl.in.cmake. Add sandia batch files with account info.
  Add batch files with batch parameters specific to cori and ray. Release.txt entry for skipping long double dt_arith tests on ppc64.
2019-01-31 14:31:38 -06:00
Larry Knox
bae744199b Add more specific batch scripts.
Add script raybsub to handle submitting .lsf files on ray with bsub <
script.lsf syntax that we couldn't handle with CMake.
Add hpc-cmake-tgz option for bin/release.
2019-01-31 14:22:52 -06:00
Dana Robinson
99d70c494d Fixed a valgrind issue with the unprotect log message. The logging
call was placed after the point where the cache entry was freed.
The fix was to just use the entry's address directly in the log
call instead of the entry itself.
2019-01-31 00:14:11 -08:00
Dana Robinson
90bf59edc5 Fixed a bug revealed by the dtransform test. A datatype transform
buffer needed to be calloc'd.
2019-01-30 23:45:32 -08:00
Dana Robinson
f833001e39 Updated sec2, log, and core VFDs to use pread/pwrite when
available (can be controlled via a configure/CMake option)
2019-01-30 17:32:40 -08:00
Neil Fortner
b561c2fce8 Merge pull request #1513 in HDFFV/hdf5 from ~NFORTNE2/hdf5_naf:develop to develop
* commit '261c22e0459f63fd81c8942992ffe3668969f0cd':
  Add RELEASE.txt note for unknown message fix (pull request 1448)
2019-01-30 16:49:34 -06:00
Neil Fortner
261c22e045 Merge branch 'develop' of ssh://bitbucket.hdfgroup.org:7999/~nfortne2/hdf5_naf into develop 2019-01-30 16:48:12 -06:00
Neil Fortner
773c35a664 Add RELEASE.txt note for unknown message fix (pull request 1448) 2019-01-30 16:47:47 -06:00
Larry Knox
252beb50b6 Account info can be submitted as an argument to run the batch scripts.
Special versions for sandia are not needed.
2019-01-28 12:52:14 -06:00
Larry Knox
0ef4c812c7 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~lrknox/hdf5_lrk into develop 2019-01-28 12:51:12 -06:00
Larry Knox
277f57d371 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '9149d5a5352de4e0b9a2e57c91525a6cad767760':
  Revert build name setting
2019-01-28 12:49:00 -06:00
Larry Knox
64114e331a Add HDF5options.cmake files for serial and parallel tests on HPC
machines (where tests are to be run as batch jobs.
Add README_HPC file with instructions for setting up configuration
to use batch scripts for running tests on HPC machines and some
pointers for cross compiling.
2019-01-28 12:43:35 -06:00
Allen Byrne
9149d5a535 Merge pull request #1504 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit 'f26ee27b1fd85d192b37d9e45fb6d20f1b7e23db':
  Revert build name setting
2019-01-28 08:24:16 -06:00
Larry Knox
cee36ca40d Remove knl configuration from ctestS.sl.in.cmake.
Add sandia batch files with account info.
2019-01-27 17:55:44 -06:00