Commit Graph

3140 Commits

Author SHA1 Message Date
Larry Knox
0f6d0803ef Merge pull request #1128 in HDFFV/hdf5 from HDFFV-10525-typo-in-vds.c to develop
* commit '863148d1fe0b6949708698ad9277dbdba8129e0c':
  fixed typo.
2018-07-15 23:35:54 -05:00
Binh-Minh Ribler
ec31438afd Fixed HDFFV-10404
Description:
    Applied the typo fixes from user's report.
    The previous pull request couldn't be merged because it was too old,
    and it was too complicated for me to resolve conflicts.
Platform tested:
    Linux/64 (jelly) - very minor
2018-07-13 13:40:22 -05:00
Larry Knox
08a8202eda Vailin's fix for H5open fail when file doesn't have write permissions
for user in test_misc33().  The test file can be
opened read-only because the test doesn't write to it.
2018-07-12 14:31:02 -05:00
Hyo-Kyung Lee
863148d1fe fixed typo. 2018-07-10 18:13:44 -05:00
hdftest
b193bc11c9 Revert "Merge pull request #1116 in HDFFV/hdf5 from ~HDFTEST/hdf5_hft:hdf5_1_10 to develop"
This reverts commit e9f476dad4, reversing
changes made to 2ff00b1b93.
2018-06-24 18:04:23 -05:00
M. Scot Breitenfeld
57f64b92d1 Merge branch 'develop' into hdf5_1_10.sync 2018-06-14 09:17:06 -05:00
Dana Robinson
91089de53f Normalization with vol_integration branch. 2018-06-06 21:34:11 -07:00
M. Scot Breitenfeld
f484649347 Merge branch 'develop' into hdf5_1_10.sync 2018-06-04 14:41:12 -05:00
Allen Byrne
f5b0b1c607 Fix usage of compression lib in shared tests 2018-06-01 10:09:53 -05:00
Dana Robinson
dec2f588ac Merge pull request #1043 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:h5do_direct_chunk_hl_to_src to develop
* commit '1da9c5545c013ebc540ba3044810889d4acfa5be':
  Restored some unused #defines to the deprecated section of H5Dpublic.h.
  Added deprecated symbol wrappers for the H5DOwrite/read_chunk wrappers.
  Updated commenting in the H5DO compat test.
  Stripped out most of the duplicated functionality in the H5DO compat test.
  * Added H5DO compatibility functions. * Changed the offset copy to use an array on the stack. * Yanked some unused #defines.
  * Fixed the error tests * Moved common functionality into helper functions
  Normalize with trunk prior to update merge
  Fixed a warning.
  Finished move of H5DOread/write_chunk calls to H5D.
  First stage of moving H5DOread/write_chunk() to src/ and making them H5D calls. * Moved H5DOread/write_chunk() to H5Dio.c and renamed to H5D*. * Moved the hl/test/test_dset_opt test to test/ and renamed to   direct_chunk. * Moved the hl/test/dectris_hl_perf test to tools/test/perform   and renamed to direct_write_perf. * Updated autotools and CMake files.
2018-05-31 18:14:24 -05:00
Vailin Choi
796dc16e34 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit 'e8ece625f223032db0d26cfffafc045e4ccdf37d':
  Normalize with vol_integration.
2018-05-31 11:50:24 -05:00
Vailin Choi
18fe60ae10 (1) Made the change according to the pull request feedback.
(2) Removed the performance test form test/th5o.c: will decide on what needs to be done to show speedup via HDFFV-10463.
2018-05-31 11:45:20 -05:00
Dana Robinson
384a1ec709 Normalize with vol_integration. 2018-05-29 14:06:01 -07:00
Vailin Choi
be2fc7dcd1 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '2b0fb7e3f1f7da5b23d430702493ed4fb7f87166': (21 commits)
  HDFFV-9739 only executes H5E tests in production
  Remove link flag from compile command
  fix typo
  Add release note
  Correct attribute location
  HDFFV-9739 fix  copy testfiles command
  HDFFV-9739 remove obsolete test files
  HDFFV-9739 dup test file for concurrent tests
  HDFFV-9739 Fix autotools script
  HDFFV-9739 Change autotools test scripts
  Fix typo
  HDFFV-9739 Update test reference
  Update current windows test machines
  HDFFV-9739 Grab err number before API call
  HDFFV-9739 Add release note
  Adjust test names for concurrent tests
  Fix soversion
  HDFFV-9739 Fix copy name
  HDFFV-9739 factor out tests into separate JUnit
  Updated the threadsafety test to use error macros instead of asserts.
  ...
2018-05-23 14:27:05 -05:00
M. Scot Breitenfeld
4ddd7704b6 Merge branch 'develop' into hdf5_1_10.sync 2018-05-22 11:48:44 -05:00
Allen Byrne
73efe72e0d Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '73d7f7e7d37b869ce9c39cc8e648ef50d563fc93':
  Updated the threadsafety test to use error macros instead of asserts.
2018-05-21 09:11:39 -05:00
Vailin Choi
4df595946c Fix for HDFFV-10469: set to latest format for virtual layout encoding. 2018-05-17 11:51:34 -05:00
Dana Robinson
0e584c7af2 Merge branch 'develop' into h5do_direct_chunk_hl_to_src 2018-05-14 17:45:23 -07:00
Vailin Choi
b178d80be0 Changes made based on feedback from pull request #1039. 2018-05-14 12:26:48 -05:00
Vailin Choi
ea66ac1e67 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit 'dcc66a4f157ace0858b788228550f3e104df3242': (35 commits)
  GGC requires attribute before function
  Correct COMPILE defs usage
  Add missing module_dir property
  Text cleanup
  Correct sentence punctuation.
  Add release note.
  Use set_property for MT flag
  Correct command usage
  Remove APPEND
  Fix typo
  Add missing test lib
  add missing folder to path
  Fix another command revert
  Missed a command revert
  Revert to old style for LINK_FLAGS gen expr not working
  LINK_FLAGS must be separate property sets
  Fix link flags syntax
  Revert refactor link flags
  refactor link flags to interface
  Refactor link flags
  ...
2018-05-14 11:20:03 -05:00
Dana Robinson
2c3b598158 Updated the threadsafety test to use error macros instead
of asserts.
2018-05-14 00:44:02 -07:00
M. Scot Breitenfeld
88e0c3e748 Merge branch 'develop' into hdf5_1_10.sync 2018-05-10 09:06:35 -05:00
M. Scot Breitenfeld
278fdfcbdb temporary fix for HDFFV-10469 2018-05-09 16:26:09 -05:00
Allen Byrne
37c27afde0 Fix MPI on Windows by adding MPI include folder 2018-05-09 14:29:44 -05:00
Allen Byrne
f1a668a3b5 Correct COMPILE defs usage 2018-05-09 08:53:25 -05:00
M. Scot Breitenfeld
b69bd0771e Merge branch 'develop' into hdf5_1_10.sync 2018-05-08 17:17:45 -05:00
Dana Robinson
ac035bf367 * Fixed the error tests
* Moved common functionality into helper functions
2018-05-02 10:11:49 -07:00
Dana Robinson
64e13ca220 Merge branch 'develop' into h5do_direct_chunk_hl_to_src 2018-04-30 15:22:09 -07:00
Allen Byrne
fde2d1fe4a Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '1f8cb03e11a46f853881f45dac18eff2dd68401e':
  Fix errors in Makefile.am files that cause "make check" to repeat test, even when there are no changes to source files.  (Also add a ggenerated script to the list of files cleaned up on 'make distclean')
  Further minor cleanups
  Checkpoint normalization against incoming hyperslab / selection / dataspace improvements.
2018-04-30 11:05:26 -05:00
Dana Robinson
09b1106e39 First stage of moving H5DOread/write_chunk() to src/ and making
them H5D calls.
* Moved H5DOread/write_chunk() to H5Dio.c and renamed to H5D*.
* Moved the hl/test/test_dset_opt test to test/ and renamed to
  direct_chunk.
* Moved the hl/test/dectris_hl_perf test to tools/test/perform
  and renamed to direct_write_perf.
* Updated autotools and CMake files.
2018-04-30 07:52:07 -07:00
Quincey Koziol
4411bc27ac Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into merge_hyperslab_updates 2018-04-29 03:05:18 -05:00
Quincey Koziol
01f196b31a Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into merge_hyperslab_updates 2018-04-29 03:04:21 -05:00
Quincey Koziol
83e2ea681d Fix errors in Makefile.am files that cause "make check" to repeat test, even
when there are no changes to source files.  (Also add a ggenerated script
to the list of files cleaned up on 'make distclean')
2018-04-28 21:38:49 -05:00
Allen Byrne
2347bffaa2 TRILABS-19 remove add_defintions and use generator expressions 2018-04-26 16:41:04 -05:00
Vailin Choi
e6bc326ec0 Fix for HDFFV-10180 Performance issues with H5Oget_info. 2018-04-24 15:10:13 -05:00
Allen Byrne
6c82c49dd5 TRILABS-20 set a compiler name on all project commands 2018-04-20 10:11:55 -05:00
Allen Byrne
46f2a2a432 TRILABS-19 Initial conversion of include_directories to targets 2018-04-17 15:57:58 -05:00
Allen Byrne
df83d78134 HDFFV-10444 fix so numbers and merge java test changes 2018-04-10 10:52:18 -05:00
Allen Byrne
db3d744f25 HDFFV-10444 fix soversion numbers for libraries 2018-04-10 08:55:17 -05:00
Allen Byrne
38cccb23ba Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '3211e907f4f9349ba7510d70cfbcc6ee36d99c58':
  Remove vestiges of H5_DEBUG_BUILD macro, switching it to the more standard H5CX_DEBUG form.
  Minor warning cleanup while working on VOL issues.
2018-04-09 07:14:53 -05:00
Allen Byrne
5e943e85e2 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '048ae59d2970dd21810577c999f756c028b6faaf':
  Correct errors with non-"instrumented library" builds (production & parallel, generally speaking).
  Update java error stack tests
  Revert using H5MF_sect_small_can_shrink and H5MF_sect_small_shrink for the file's free space manager (and add a comment about them).
  Add comment for the file flush when the file low / high bounds are changed after a file is open.
  Expanded comments abuot H5CX_t fields.
  Add an assert to verify that we don't write when between MPI_Barrier() calls during a flush.
  Add comments for internal structs.
  Remove redundant 'is_collective' parameter from H5CX_set_loc.
  Correct typo in comment.
  Revert some tangential code cleanups.
  Add API context source files to CMake configuration file.
  Corrections for parallel I/O & tests.
  Update handling of reporting for breaking collective I/O when the default DXPL is used.
  Update encoded DXPLs to reflect changes in properties.
  Correct typo for error checking malloc return value.
  Refactor H5CX code to reduce duplication.
  Cleanup API context function usage.
  Add API context interface and use it throughout the library.
2018-04-06 09:21:06 -05:00
Dana Robinson
02039e0a91 Minor warning cleanup while working on VOL issues. 2018-04-06 00:11:18 -07:00
Allen Byrne
f6a5236e43 Use var instead of absolute number 2018-04-05 08:16:13 -05:00
Quincey Koziol
c135db3365 Update encoded DXPLs to reflect changes in properties. 2018-03-20 13:52:04 -05:00
Allen Byrne
e158ec4d1f Merge mem leak fix from develop 2018-03-20 09:17:33 -05:00
Quincey Koziol
d812c6fe60 Cleanup API context function usage. 2018-03-18 22:51:19 -05:00
Quincey Koziol
c31460c1b7 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into merge_func_enter_vol 2018-03-18 18:38:21 -05:00
Quincey Koziol
f38864920d Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into merge_func_enter_vol
Plus initial steps toward merging API context push into FUNC_ENTER_API* macros
2018-03-18 18:36:49 -05:00
Allen Byrne
a32178ba94 Fix memory leak simply by capturing allocation in var 2018-03-16 09:03:08 -05:00
Quincey Koziol
4a17aff408 Add API context interface and use it throughout the library. 2018-03-15 16:54:30 -05:00