This is the similar set of changes that was checked in to 1.8 branch:
Incorporate the code changes that were missing from the original patch:
(1) Additional tests in hl/test/test_dset_opt.c
(2) Fix in src/H5Dchunk.c for direct access when an entry is in chunk cache but not dirty
Tested on platypus, ostrich, kituo, mayll, osx1010test, moohan, quail, emu.
* commit '1d786206df53942a3a3dbd538b369c94a632050d':
Removed redundant assignement.
Fixes the chunk overwrite bug (HDFFV-10187) and adds a new H5DO HL test.
* commit '228939e7315cc9644e158fc246f4908301d77a35':
Call to H5Dopen has H5dopen2 arguments at line 12704 of test/dsets.c - changed to H5Dopen2 to fix failure with --with-default-api-version=v16 configure option.
* commit '1a4bda1bd824df2da1e8c3441881fb7fca6a4413':
Set the HDF5_GENERATE_HEADERS CMake option to default to ON and removed the option from the CMake cache init files.
* commit 'd94405ded4451831e4fc90ceff70acbc1e6a8f9c':
Fix for HDFFV-10051 Fix missing declaration for H5D__layout_compact_dirty_test(). Tested on mayll and osx1010test.
Fix for the two issues reported in HDFFV-10051 Modifications made based on the review comments from pull request #494 Tested on moohan, mayll, kituo, platypus, ostrich, osx1010test, quail, emu.
Fix for the two issues reported in HDFFV-10051: (1) Repeated open/close of a compact dataset fails due to the increment of ndims in the dataset structure for every open. --This is done only for chunked dataset via H5D__chunk_set_sizes(). (2) layout "dirty" flag for a compact dataset is not reset properly after flushing the data at dataset close. --Reset the "dirty" flag before flushing the message to the object header via H5O_msg_write(). Tested on moohan, kituo, platypus, ostrich, osx1010test, quail, emu.
(1) Repeated open/close of a compact dataset fails due to the
increment of ndims in the dataset structure for every open.
--This is done only for chunked dataset via H5D__chunk_set_sizes().
(2) layout "dirty" flag for a compact dataset is not reset
properly after flushing the data at dataset close.
--Reset the "dirty" flag before flushing the message to the object header
via H5O_msg_write().
Tested on moohan, kituo, platypus, ostrich, osx1010test, quail, emu.
* commit 'ae05b0c726f565a13aed9a8edeefb39299c1ca6d':
Modifications based on pull request review. Made couple changes based on the review comments.
Incorporate patch from GE Healthcare (HDFFV-9934) This is the same patch that had already been integrated to 1.8 branch (pull request #387). Tested on moohan, ostrich, platypus, emu, osx1010test, quail, kituo, mayll.
This is the same patch that had already been integrated to 1.8 branch (pull request #387).
Tested on moohan, ostrich, platypus, emu, osx1010test, quail, kituo, mayll.
* commit '14bc39bcb59ce36d1d2fd156afeaf3aa7bb5ad84':
Updated bin/trace to emit errors and reordered autogen.sh processing so that script failures leave the library in a non-compilable state, making it harder to ignore errors.
* commit '6449f650e65a212f73b8ec551b699dd9991c6dde':
Fix for HDFFV-10166 h5watch tests fail randomly to match expected output files (1) Re-structure tests to do one "extend" action at a time (2) Re-try test till max limit before final failure
* commit 'ddd8cf0e1c0c1450de1c37ba866afad469cf63b3':
Modifications based on review comments from pull request. Made changes according to review comments and discussion with Allen.
Fix for DAILYTEST-259 h5clear test failure Deposit the test files in test/misc/testfiles for testh5clear.sh to use instead of depending on h5clear_gentest. Tested on kituo, osx1010test, quail, platypus and ostrich.
Deposit the test files in test/misc/testfiles for testh5clear.sh to use instead of depending on h5clear_gentest.
Tested on kituo, osx1010test, quail, platypus and ostrich.
* commit '15f85df5405eb2caf6ee4d3bc5f558344d4bb16a':
bin/trace updates in H5PL.c
The cache_image test shows a skipped message about EoC in parallel.
Added code to disable the evict-on-close feature in the parallel library.
* commit '19762419ce30429667e9def628c785b78b961b68':
Update tool dyn lib
LDFLAGS module forces .so lib to be built on osx instead of .dylib
java jni lib also needs to avoid the version-info
HDFFV-10170 undo patch
Add plugin options for libs
Reformat char * args
HDFFV-10170 add missing endif
