Commit Graph

16510 Commits

Author SHA1 Message Date
Vailin Choi
61d979c1e9 Merge pull request #461 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:hdf5_1_10 to hdf5_1_10
* commit '6449f650e65a212f73b8ec551b699dd9991c6dde':
  Fix for HDFFV-10166 h5watch tests fail randomly to match expected output files (1) Re-structure tests to do one "extend" action at a time (2) Re-try test till max limit before final failure
2017-04-24 18:20:09 -05:00
Vailin Choi
6449f650e6 Merge branch 'hdf5_1_10' of https://bitbucket.hdfgroup.org/scm/~vchoi/my_hdf5_fork into hdf5_1_10 2017-04-24 18:17:29 -05:00
Vailin Choi
c40edf8c24 Fix for HDFFV-10166 h5watch tests fail randomly to match expected output files
(1) Re-structure tests to do one "extend" action at a time
(2) Re-try test till max limit before final failure
2017-04-24 18:12:50 -05:00
Vailin Choi
772bfce6ce Merge pull request #460 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:hdf5_1_10 to hdf5_1_10
* commit 'ddd8cf0e1c0c1450de1c37ba866afad469cf63b3':
  Modifications based on review comments from pull request. Made changes according to review comments and discussion with Allen.
  Fix for DAILYTEST-259 h5clear test failure Deposit the test files in test/misc/testfiles for testh5clear.sh to use instead of depending on h5clear_gentest. Tested on kituo, osx1010test, quail, platypus and ostrich.
2017-04-24 17:48:54 -05:00
Vailin Choi
ddd8cf0e1c Modifications based on review comments from pull request.
Made changes according to review comments and discussion with Allen.
2017-04-24 17:16:26 -05:00
Vailin Choi
22d54edf90 Fix for DAILYTEST-259 h5clear test failure
Deposit the test files in test/misc/testfiles for testh5clear.sh to use instead of depending on h5clear_gentest.
Tested on kituo, osx1010test, quail, platypus and ostrich.
2017-04-24 17:12:34 -05:00
Dana Robinson
21850aa363 Merge pull request #456 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:hdf5_1_10 to hdf5_1_10
* commit '87ceb783920c63cf374c08f17d7d601923481459':
  Fixed problems that prevent bin/trace from marking up some functions.
2017-04-24 16:06:26 -05:00
Dana Robinson
87ceb78392 Fixed problems that prevent bin/trace from marking up some functions. 2017-04-24 15:48:47 -04:00
Larry Knox
c0a8eb362c Merge pull request #450 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:hdf5_1_10 to hdf5_1_10
* commit '15f85df5405eb2caf6ee4d3bc5f558344d4bb16a':
  bin/trace updates in H5PL.c
  The cache_image test shows a skipped message about EoC in parallel.
  Added code to disable the evict-on-close feature in the parallel library.
2017-04-21 16:05:44 -05:00
Dana Robinson
15f85df540 bin/trace updates in H5PL.c 2017-04-20 18:14:44 -04:00
Dana Robinson
cbab16c8f2 The cache_image test shows a skipped message about EoC in parallel. 2017-04-20 16:59:05 -04:00
Dana Robinson
2b936c79e2 Added code to disable the evict-on-close feature in
the parallel library.
2017-04-20 16:58:34 -04:00
Allen Byrne
7037520281 Merge pull request #445 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to hdf5_1_10
* commit '6126528f115757afe0b5aeb8f0a934b6a51946f4':
  Correct typo of file name
2017-04-20 13:44:00 -05:00
Allen Byrne
6126528f11 Correct typo of file name 2017-04-20 12:25:27 -05:00
Scot Breitenfeld
2b7a833c2d Merge pull request #439 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:hdf5_1_10 to hdf5_1_10
* commit '1f5ea1a71ac1a859fee9cad0b4672ea6f603981d':
  added point to build script repo.
2017-04-18 17:00:54 -05:00
M. Scot Breitenfeld
1f5ea1a71a added point to build script repo. 2017-04-18 16:24:07 -05:00
Allen Byrne
be67b32c90 Merge pull request #437 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to hdf5_1_10
* commit '19762419ce30429667e9def628c785b78b961b68':
  Update tool dyn lib
  LDFLAGS module forces .so lib to be built on osx instead of .dylib
  java jni lib also needs to avoid the version-info
  HDFFV-10170 undo patch
  Add plugin options for libs
  Reformat char * args
  HDFFV-10170 add missing endif
2017-04-18 15:22:28 -05:00
Allen Byrne
19762419ce Update tool dyn lib 2017-04-18 14:24:22 -05:00
Allen Byrne
db4dd5be86 LDFLAGS module forces .so lib to be built on osx instead of .dylib 2017-04-18 14:14:20 -05:00
Allen Byrne
1c782f1ae1 java jni lib also needs to avoid the version-info 2017-04-18 14:14:09 -05:00
Allen Byrne
0bab6fb76c HDFFV-10170 undo patch 2017-04-18 14:13:56 -05:00
Allen Byrne
d5da45e168 Add plugin options for libs 2017-04-18 14:13:22 -05:00
Allen Byrne
ed9ffe7249 Reformat char * args 2017-04-18 09:34:10 -05:00
Allen Byrne
d39a79fa4c HDFFV-10170 add missing endif 2017-04-18 09:30:11 -05:00
Larry Knox
dcd18f8684 Merge pull request #431 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to hdf5_1_10
* commit 'b67e626ba9095f35dd9a8f9e8ca906320f85914c':
  HDFFV-10173 remove hook for noinst libs
  HDFFV-10170 fix noinst for test libs
  HDFFV-10173 fix compile on VS2008
  Due to HDFVIEW-19 add read VL as string function
2017-04-17 16:28:25 -05:00
Allen Byrne
b67e626ba9 HDFFV-10173 remove hook for noinst libs 2017-04-17 16:25:34 -05:00
Larry Knox
f696926be1 Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to hdf5_1_10
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
  Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
  Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
  Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
  Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
2017-04-17 14:32:16 -05:00
Allen Byrne
a447dd64cc HDFFV-10170 fix noinst for test libs 2017-04-17 13:58:14 -05:00
Allen Byrne
5f313c0172 HDFFV-10173 fix compile on VS2008 2017-04-17 12:40:00 -05:00
lrknox
54957d37f5 Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. 2017-04-15 12:50:10 -05:00
lrknox
49cded79ce Add new files in release_docs to MANIFEST.
Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running
autogen.sh.

Conflicts:
	README.txt
	c++/src/Makefile.in
	fortran/src/Makefile.in
	hl/c++/src/Makefile.in
	hl/fortran/src/Makefile.in
	hl/src/Makefile.in
	java/src/jni/Makefile.in
	release_docs/RELEASE.txt
	src/Makefile.in
2017-04-15 08:17:10 -05:00
lrknox
b9a27fddaa Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
* commit '0d05cb607e5951f3a28a101be56ca194022a7fa1':
  Reverted addition of The HDF Group copyright headers to 3rd party CMake files for Java.
  Add Copyright headers to 90 files (mostly .cmake files) without Copyright headers.
  Add "Copyright by The HDF Group."" to copyright header.
2017-04-14 16:40:52 -05:00
lrknox
25ec07450a Change copyright headers to replace url referring to file to be removed
and replace it with new url for COPYING file.

Fix 2 lines in java error test expected output file where messages
include line numbers changed by reducing the copyright header by 2
lines.
2017-04-14 11:54:16 -05:00
Allen Byrne
a4391c1243 Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)
* commit 'b77e601996ea89c8a25f0ce12e3a6a0058fac63e':
  Skip tests for page buffering in test/fheap.c for parallel build Skip the two tests for page buffering in test/fheap.c because this feature is disabled in parallel. Activate full testing when this feature is re-enabled in the future for parallel build.
  Due to HDFVIEW-19 add read VL as string function
  Fix URL name
  updated with README changes
  DAILYTEST-250 change test props to reduce timeout
  Combined the README_DEVEL and README, and removed out-dated README material
  Fix for H5Dset_extent test failure with extensive array indexing (HDFFV-9771) 1) Calculate chunk index for extensive array index based on swizzled max chunks when unlim_dim > 0 2) Minor fixes to test/fheap.c that somehow were missed from last check in.  See pull request #396 review comments.
2017-04-14 08:43:11 -05:00
Larry Knox
b77e601996 Merge pull request #425 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to hdf5_1_10
* commit 'b03e41146a3e15c7a287ab98f1963bf7944719a8':
  Skip tests for page buffering in test/fheap.c for parallel build Skip the two tests for page buffering in test/fheap.c because this feature is disabled in parallel. Activate full testing when this feature is re-enabled in the future for parallel build.
  Due to HDFVIEW-19 add read VL as string function
  Fix URL name
  updated with README changes
  DAILYTEST-250 change test props to reduce timeout
  Combined the README_DEVEL and README, and removed out-dated README material
  Fix for H5Dset_extent test failure with extensive array indexing (HDFFV-9771) 1) Calculate chunk index for extensive array index based on swizzled max chunks when unlim_dim > 0 2) Minor fixes to test/fheap.c that somehow were missed from last check in.  See pull request #396 review comments.
2017-04-13 16:40:56 -05:00
lrknox
b03e41146a Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~lrknox/hdf5_lrk into hdf5_1_10 2017-04-13 16:28:03 -05:00
Jordan Henderson
906c181918 Merge pull request #422 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '606529f5e0cffcea26af66106f094fbe350c5bac':
  Due to HDFVIEW-19 add read VL as string function
2017-04-13 10:15:16 -05:00
Vailin Choi
7ff4c5fd7a Merge pull request #421 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to develop
* commit '3d1b227a67b557da247f6b683f58617b6d75bfdb':
  Skip tests for page buffering in test/fheap.c for parallel build Skip the two tests for page buffering in test/fheap.c because this feature is disabled in parallel. Activate full testing when this feature is re-enabled in the future for parallel build.
2017-04-13 10:06:19 -05:00
Allen Byrne
53132d8864 Due to HDFVIEW-19 add read VL as string function 2017-04-13 10:02:15 -05:00
Vailin Choi
3d1b227a67 Skip tests for page buffering in test/fheap.c for parallel build
Skip the two tests for page buffering in test/fheap.c because this feature is disabled in parallel.
Activate full testing when this feature is re-enabled in the future for parallel build.
2017-04-13 02:47:23 -05:00
Allen Byrne
606529f5e0 Due to HDFVIEW-19 add read VL as string function 2017-04-12 17:21:43 -05:00
Scot Breitenfeld
f574d627d8 Merge pull request #410 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:develop to develop
* commit '265950a83a68ea55b5bc8dcbefa2d09b4f8110be':
  updated with README changes
  Combined the README_DEVEL and README, and removed out-dated README material
2017-04-12 11:03:42 -05:00
Vailin Choi
f6920ad11c Merge pull request #416 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:hdf5_1_10 to hdf5_1_10
* commit 'f75379d780dc6d2a262d0b613e588a8c0629c848':
  Fix for H5Dset_extent test failure with extensive array indexing (HDFFV-9771) 1) Calculate chunk index for extensive array index based on swizzled max chunks when unlim_dim > 0 2) Minor fixes to test/fheap.c that somehow were missed from last check in.  See pull request #396 review comments.
2017-04-12 03:23:57 -05:00
Vailin Choi
f75379d780 Fix for H5Dset_extent test failure with extensive array indexing (HDFFV-9771)
1) Calculate chunk index for extensive array index based on swizzled max chunks when unlim_dim > 0
2) Minor fixes to test/fheap.c that somehow were missed from last check in.  See pull request #396 review comments.
2017-04-11 23:48:51 -05:00
Vailin Choi
6efca6717c Merge pull request #409 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to develop
* commit '7eda1e3c6a57f79b59fc35518816db4e3a2b382d':
  Fix for H5Dset_extent test failure with extensive array indexing (HDFFV-9771) 1) Calculate chunk index for extensive array index based on swizzled max chunks when unlim_dim > 0 2) Minor fixes to test/fheap.c that somehow were missed from last check in.  See pull request #396 review comments.
2017-04-11 19:19:51 -05:00
Vailin Choi
7eda1e3c6a Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '2821b8bd768138db6b5f917a5b7325f878f8f7d0':
  Fix URL name
  DAILYTEST-250 change test props to reduce timeout
2017-04-11 18:09:03 -05:00
Allen Byrne
4a37934b5d Merge pull request #413 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to hdf5_1_10
* commit 'e76d9217f49a300501cff55ded22e4c8107d2582':
  Fix URL name
  DAILYTEST-250 change test props to reduce timeout
2017-04-11 16:57:27 -05:00
Allen Byrne
2821b8bd76 Merge pull request #412 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '8a9e4b94c3938f4c42ad9399737afc6478ded160':
  Fix URL name
  DAILYTEST-250 change test props to reduce timeout
2017-04-11 16:57:14 -05:00
Allen Byrne
e76d9217f4 Fix URL name 2017-04-11 15:12:27 -05:00
Allen Byrne
6efdeb7630 DAILYTEST-250 change test props to reduce timeout 2017-04-11 15:12:03 -05:00