Commit Graph

1079 Commits

Author SHA1 Message Date
Larry Knox
61d3403d12 Remove install-exec-hook from hl/fortran/Makefile.am.
Add check for existing links in hl/fortran/src/Makefile.am.
2019-01-06 21:59:35 -06:00
Larry Knox
cceb9f06b8 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '0e34f0feaaeb6d2286f87f695f25fae45c070a42': (26 commits)
  HDFFV-10664 update reference file
  HDFFV-10664 update reference files
  HDFFV-10664 add missing function and check for restriction
  Remove "bad" statements at end of TEST_ERROR.     Formerly arguments to FAIL_PUTS_ERROR
  Add RELEASE.txt entry for HDFFV-10596.
  Add semicolon at end of TEST_ERROR() invocation for consistency.
  Uninstall should remove the libhdf5_hl_fortran links.
  Add symlinks named libhdf5_hl_fortran* to libhdf5hl_fortran in Makefile.am to match cmake install and the name pattern for other hl lib files.
  Change FAIL_PUTS_ERROR to TEST_ERROR.
  Cleaned up the parallel flush test and set t_pflush1 to always fail. Also set CMake to handle this.
  Update calls: H5Dcreate to H5Dcreate2, H5Acreate to H5Acreate2.
  Removed a comment.
  Fix comment
  Align H5Lcreate_ud behavior with documentation for NULL udata pointer
  Update toolchain comment
  Use c99 standard cmake variable
  Add PGI toolchain
  Correction based on code review.
  HDFFV-10664 add check for state before set call
  HDFFV-10546 refactor variable name
  ...
2019-01-05 07:41:12 -06:00
Larry Knox
cc0421291e Uninstall should remove the libhdf5_hl_fortran links. 2019-01-04 08:50:10 -06:00
Larry Knox
30abf02de2 Add symlinks named libhdf5_hl_fortran* to libhdf5hl_fortran in
Makefile.am to match cmake install and the name pattern for other hl lib
files.

Add missing ';' to test/dsets.c line 13075.
2019-01-04 07:26:15 -06:00
Larry Knox
72124031ec Add libhdf5_hl_fortran symlinks for libhdf5hl_fortran files.
Set ctest*.lsf.in.cmake scripts for sierra.
Correct src/CMakelists.txt syntax error.
2018-12-31 09:20:27 -06:00
Allen Byrne
11b4c1f3af HDFFV-10632 update autotools test scripts to match cmake 2018-12-06 12:48:39 -06:00
Allen Byrne
d6de299f01 Need nonexistent file to skip stdout compare 2018-12-04 23:16:03 -06:00
Allen Byrne
e3e24a2989 HDFFV-10632 - split stderr and stdout in cmake 2018-12-03 09:35:59 -06:00
M. Scot Breitenfeld
cd73b837db HDFFV-10537: Remove installation of Fortran test mod files
Removed from autools install, cmake does not have this issue.
2018-11-09 16:00:34 -06:00
Allen Byrne
2c48f6bd00 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '7db3ea76da5d3b5c237a707b09d1618d3206ba83':
  Makes the installed header files the same between the autotools and CMake.
2018-10-29 11:10:27 -05:00
Dana Robinson
62b92ddf40 Makes the installed header files the same between the autotools
and CMake.

* CMake will no longer install private generated headers and tools
  library headers.
* Several empty public header files (which represent internal packages)
  were removed. These were only installed by CMake.
* Autotools installs will install H5FDwindows.h.

Fixes HDFFV-10614.
2018-10-26 20:44:29 -07:00
Allen Byrne
633b7f93ce TRILAB-81 coverity fixes 2018-10-17 10:57:56 -05:00
Dana Robinson
eb78fd8832 Develop normalization with vol_integration.
Mostly peripheral things like the tools and wrappers,
with just enough core library code to support that.
2018-09-18 22:57:37 -07:00
Allen Byrne
27af9a7922 HD prefix and whitespace 2018-08-28 10:54:54 -05:00
Larry Knox
d20fd310e4 Change prefix in example scripts to relative path to bin. This was done
for 1.8, and works wherever installed without the need to replace the
original prefix.
2018-08-23 07:37:00 -05:00
Allen Byrne
81300213e7 Add mpi include folders for fortran C objects 2018-06-06 11:16:02 -05:00
Dana Robinson
dec2f588ac Merge pull request #1043 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:h5do_direct_chunk_hl_to_src to develop
* commit '1da9c5545c013ebc540ba3044810889d4acfa5be':
  Restored some unused #defines to the deprecated section of H5Dpublic.h.
  Added deprecated symbol wrappers for the H5DOwrite/read_chunk wrappers.
  Updated commenting in the H5DO compat test.
  Stripped out most of the duplicated functionality in the H5DO compat test.
  * Added H5DO compatibility functions. * Changed the offset copy to use an array on the stack. * Yanked some unused #defines.
  * Fixed the error tests * Moved common functionality into helper functions
  Normalize with trunk prior to update merge
  Fixed a warning.
  Finished move of H5DOread/write_chunk calls to H5D.
  First stage of moving H5DOread/write_chunk() to src/ and making them H5D calls. * Moved H5DOread/write_chunk() to H5Dio.c and renamed to H5D*. * Moved the hl/test/test_dset_opt test to test/ and renamed to   direct_chunk. * Moved the hl/test/dectris_hl_perf test to tools/test/perform   and renamed to direct_write_perf. * Updated autotools and CMake files.
2018-05-31 18:14:24 -05:00
Vailin Choi
be2fc7dcd1 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '2b0fb7e3f1f7da5b23d430702493ed4fb7f87166': (21 commits)
  HDFFV-9739 only executes H5E tests in production
  Remove link flag from compile command
  fix typo
  Add release note
  Correct attribute location
  HDFFV-9739 fix  copy testfiles command
  HDFFV-9739 remove obsolete test files
  HDFFV-9739 dup test file for concurrent tests
  HDFFV-9739 Fix autotools script
  HDFFV-9739 Change autotools test scripts
  Fix typo
  HDFFV-9739 Update test reference
  Update current windows test machines
  HDFFV-9739 Grab err number before API call
  HDFFV-9739 Add release note
  Adjust test names for concurrent tests
  Fix soversion
  HDFFV-9739 Fix copy name
  HDFFV-9739 factor out tests into separate JUnit
  Updated the threadsafety test to use error macros instead of asserts.
  ...
2018-05-23 14:27:05 -05:00
Allen Byrne
7c4598cf74 Remove link flag from compile command 2018-05-22 15:48:34 -05:00
Dana Robinson
0e584c7af2 Merge branch 'develop' into h5do_direct_chunk_hl_to_src 2018-05-14 17:45:23 -07:00
Vailin Choi
b178d80be0 Changes made based on feedback from pull request #1039. 2018-05-14 12:26:48 -05:00
Vailin Choi
ea66ac1e67 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit 'dcc66a4f157ace0858b788228550f3e104df3242': (35 commits)
  GGC requires attribute before function
  Correct COMPILE defs usage
  Add missing module_dir property
  Text cleanup
  Correct sentence punctuation.
  Add release note.
  Use set_property for MT flag
  Correct command usage
  Remove APPEND
  Fix typo
  Add missing test lib
  add missing folder to path
  Fix another command revert
  Missed a command revert
  Revert to old style for LINK_FLAGS gen expr not working
  LINK_FLAGS must be separate property sets
  Fix link flags syntax
  Revert refactor link flags
  refactor link flags to interface
  Refactor link flags
  ...
2018-05-14 11:20:03 -05:00
Allen Byrne
37c27afde0 Fix MPI on Windows by adding MPI include folder 2018-05-09 14:29:44 -05:00
Allen Byrne
4069936ee4 Add missing module_dir property 2018-05-09 08:44:45 -05:00
Allen Byrne
424e2275bc Correct command usage 2018-05-07 16:08:42 -05:00
Dana Robinson
1c11ddec6d Added deprecated symbol wrappers for the H5DOwrite/read_chunk
wrappers.
2018-05-04 16:43:06 -07:00
Dana Robinson
1b014a111e Updated commenting in the H5DO compat test. 2018-05-04 14:16:56 -07:00
Dana Robinson
def636edb0 Stripped out most of the duplicated functionality in the H5DO
compat test.
2018-05-04 14:13:56 -07:00
Dana Robinson
1fa0c5a4b5 * Added H5DO compatibility functions.
* Changed the offset copy to use an array on the stack.
* Yanked some unused #defines.
2018-05-04 09:01:54 -07:00
Allen Byrne
6fcf4c9aeb Remove APPEND 2018-05-03 15:41:50 -05:00
Allen Byrne
2316a6c927 Fix typo 2018-05-03 12:37:57 -05:00
Allen Byrne
5fefa587e5 Add missing test lib 2018-05-03 12:36:59 -05:00
Allen Byrne
9d13f3b1e1 add missing folder to path 2018-05-03 12:32:36 -05:00
Allen Byrne
1d1333ed6b Revert to old style for LINK_FLAGS gen expr not working 2018-05-03 11:57:30 -05:00
Allen Byrne
01a77cbfb1 LINK_FLAGS must be separate property sets 2018-05-03 10:44:57 -05:00
Allen Byrne
1ab0814a43 Fix link flags syntax 2018-05-03 09:28:54 -05:00
Allen Byrne
b73c0d2ab8 Revert refactor link flags 2018-05-02 16:33:35 -05:00
Allen Byrne
d906f2dcc5 refactor link flags to interface 2018-05-02 15:42:38 -05:00
Allen Byrne
0c77fbaeb9 Fix defs and additional MSVC items 2018-05-02 13:52:02 -05:00
Allen Byrne
c6827191f9 TRILABS-19 fix syntax for windows 2018-05-02 12:19:30 -05:00
Allen Byrne
6dd91d206f TRILABS-19 Link flags need - character 2018-05-02 10:04:14 -05:00
Dana Robinson
64e13ca220 Merge branch 'develop' into h5do_direct_chunk_hl_to_src 2018-04-30 15:22:09 -07:00
Allen Byrne
6fb94eb3a3 TRILABS-19 fix fortran link flags 2018-04-30 09:56:27 -05:00
Dana Robinson
09b1106e39 First stage of moving H5DOread/write_chunk() to src/ and making
them H5D calls.
* Moved H5DOread/write_chunk() to H5Dio.c and renamed to H5D*.
* Moved the hl/test/test_dset_opt test to test/ and renamed to
  direct_chunk.
* Moved the hl/test/dectris_hl_perf test to tools/test/perform
  and renamed to direct_write_perf.
* Updated autotools and CMake files.
2018-04-30 07:52:07 -07:00
Allen Byrne
76d0cc0ca9 TRILABS-19 Refactor fortran properties 2018-04-30 09:03:29 -05:00
Allen Byrne
2347bffaa2 TRILABS-19 remove add_defintions and use generator expressions 2018-04-26 16:41:04 -05:00
Vailin Choi
e6bc326ec0 Fix for HDFFV-10180 Performance issues with H5Oget_info. 2018-04-24 15:10:13 -05:00
Allen Byrne
6c82c49dd5 TRILABS-20 set a compiler name on all project commands 2018-04-20 10:11:55 -05:00
Allen Byrne
03e579f201 TRILABS-19 All c code INCLUDE_DIRECTORIES converted 2018-04-17 22:29:57 -05:00
Allen Byrne
46f2a2a432 TRILABS-19 Initial conversion of include_directories to targets 2018-04-17 15:57:58 -05:00