Commit Graph

2670 Commits

Author SHA1 Message Date
Dana Robinson
914643490a [svn-r27946] Brought VDS branch in sync with trunk (up to r27945).
Tested on Ubuntu 15.04 (Linux 3.19 x86_64), gcc 4.9.2, MPICH 3.1.4
and CMake 3.3.2.
    - Autotools serial w/ Fortran, C++
    - Autotools parallel w/ Fortran
    - CMake serial w/ Fortran, C++
2015-10-04 02:33:40 -05:00
Allen Byrne
b9d27c0ed3 [svn-r27932] Increase timeout for istore test when running under vfd. 2015-10-02 08:59:03 -05:00
Dana Robinson
5548799289 [svn-r27918] Brought in sync with the trunk:
r27860-27883
r27892-27916

Tested on: - h5committest
           - jam (parallel) fails with an existing, unrelated MPI config error
           - platypus fails with due to an existing, unrelated cmakehdf5 error
             where it does not recognize --enable-fortran2003.
2015-09-30 00:46:19 -05:00
Allen Byrne
ea70d11227 [svn-r27909] Exclude CYGWIN 2015-09-29 09:55:35 -05:00
Allen Byrne
ef2885c5ca [svn-r27908] Give cache tests extra time for VFD tests 2015-09-29 09:53:52 -05:00
Allen Byrne
6272555394 [svn-r27896] Synch VFD types with autotools 2015-09-28 12:47:19 -05:00
Dana Robinson
5422acf9b2 [svn-r27892] Removed redefinition of H5C__HASH_FCN in test/cache_common.h.
This was causing failures on Ada.

Tested on: Ubuntu 15.04 (Linux 3.19.0) w/ gcc 4.9.3
2015-09-26 23:56:13 -05:00
Quincey Koziol
af25c747ad [svn-r27851] Description:
Normalization changes that wouldn't otherwise be necessary if the VDS branch
wasn't coming in shortly.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    (h5committest forthcoming)
2015-09-21 21:11:54 -05:00
Quincey Koziol
d3c6b4ad72 [svn-r27848] Description:
Clean up warnings and some normalization against trunk.

Tested:
    McaOSX/64 10.10.5 (amazon) w/serial & parallel
    (h5committest not required on this branch)
2015-09-21 19:21:18 -05:00
Dana Robinson
209df7c3b0 [svn-r27839] Removed generated autotools stragglers missed in trunk sync. 2015-09-21 03:36:01 -05:00
Quincey Koziol
0695d6366a [svn-r27835] Description:
Sync w/trunk.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    (h5committest not required on this branch)
2015-09-20 21:18:45 -05:00
Quincey Koziol
8fc9a9ba25 [svn-r27834] Description:
Close FAPL for external link test, to fix infinite loop closing the library.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial 
    (too minor to require h5committest)
2015-09-20 21:08:56 -05:00
Dana Robinson
944e42d5ea [svn-r27818] Minor warning fixes.
Tested on: h5committest
2015-09-17 12:21:34 -05:00
Quincey Koziol
ee7612be44 [svn-r27811] Description:
Refactor property list code to "deep copy" properties in the correct way,
retraining the rest of the library to copy & release things correctly.  This
cleans up another batch of memory leaks, etc. within the library.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    Linux/32 2.6.x (jam) w/serial & parallel
    (h5committest forthcoming)
2015-09-16 17:27:49 -05:00
Quincey Koziol
222e7186ea [svn-r27810] Description:
Clean up resources on failure

Tested on:
    Linux/32 2.6.x (jam) w/Purify
2015-09-16 16:57:01 -05:00
Allen Byrne
12d5f2bb3c [svn-r27808] Update CMake files to use updated test files. 2015-09-16 16:38:16 -05:00
Quincey Koziol
81b5e1c51f [svn-r27807] Description:
Close memory leak on failure.

Tested on:
    Linux/32 2.6.x (jam) w/purify
2015-09-16 15:30:26 -05:00
Neil Fortner
d23cc2da70 [svn-r27806] Fix property list serialization for values encoded by H5Pset_chunk_cache to be
compatible between 32 and 64 bit systems.
Expand cross platform property list encode/decode testing.
Fix warning in H5P__fill_value_enc.

Tested: jam, koala, ostrich (h5committest), ummon
2015-09-16 14:55:38 -05:00
Dana Robinson
2385b2b0ad [svn-r27800] Minor warning fixes in the library tests.
Tested on: jam (too minor for h5committest)
2015-09-16 08:54:23 -05:00
Dana Robinson
9af344117c [svn-r27794] Reintegration merge of features/autotools_rework branch with trunk
NOTES:

- Developers will have to run autogen.sh before building with the autotools.

- autogen.sh takes the -p option to mimic the old bin/reconfigure behavior.

- The generated error, overflow and version headers have been left in place.

- The generated H5LT parser code has also been left in place.

- There are no changes for CMake users at this time.

Tested on: h5committest
2015-09-15 15:38:57 -05:00
Quincey Koziol
b2f94f9faf [svn-r27774] Description:
Correct test reset code in plugin code and fix typo in testing script.

Tested on:
    Linux 2.6/32 (jam) w/serial
2015-09-14 14:53:47 -05:00
Quincey Koziol
43443b2208 [svn-r27773] Description:
Correct typos in fix.

Tested on:
    Linux 2.6/32 (jam) w/gcc
2015-09-14 14:27:31 -05:00
Quincey Koziol
02ce7e7386 [svn-r27772] Description:
Clean up warnings, address HDFFV-9524

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial
    (Too minor to require h5committest)
2015-09-14 11:39:09 -05:00
Quincey Koziol
050dd02387 [svn-r27771] Description:
Merge in part of Neil's property list fixes:  Fix a minor memory leak,
add some sanity checks, clean up the code a little, and verify that encoding/
decoding default versions of the property lists works correctly.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial
    (Too minor to require h5committest)
2015-09-14 11:21:31 -05:00
Quincey Koziol
1023374492 [svn-r27768] Description:
Complete revamp of package initialization/shutdown mechanism in the library.
Each package now has a single init/term routine.

    This new way should avoid packages being re-initialized during library
shutdown and is also be _much_ more proactive about giving feedback for
resource leaks internal to the library.

    Introduces a new "module" header file for packages in the library
(e.g src/H5Fmodule.h) which sets up some necessary package configuration macros
for the FUNC_ENTER/LEAVE macros.  (The VFL drivers have their own slightly
modified version of this header, src/H5FDdrvr_module.h)

    Also cleaned up a bunch of resources leaks all across the library and tests,
along with addressing many warnings, as I encountered them.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    Linux/64 3.10.x (kituo) w/serial & parallel
    Linux/64 2.6.x (ostrich) w/serial
2015-09-13 22:58:59 -05:00
Dana Robinson
122bf84bb3 [svn-r27760] Brought r27631-27755 over from the trunk.
tested on: jam
2015-09-11 09:08:04 -05:00
Allen Byrne
4b748365df [svn-r27748] Correct name of target 2015-09-10 09:19:43 -05:00
Allen Byrne
8e3464d2d0 [svn-r27747] Correct name of target 2015-09-10 09:18:54 -05:00
Allen Byrne
10da31a926 [svn-r27745] Merge trunk revision 27744 2015-09-10 09:11:17 -05:00
Quincey Koziol
26baf1a805 [svn-r27710] Description:
Bring the "metadata rings" code from its branch (mdc_rings_v2) to the trunk.
(This change will support the page buffering feature)

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    (h5committest forthcoming)
2015-09-09 01:33:03 -05:00
Allen Byrne
7860f3f5b6 [svn-r27668] Increase timeout for objcopy 2015-09-03 09:48:18 -05:00
Neil Fortner
c839ed3383 [svn-r27646] Add version number to VDS global heap object encoding.
Fix handling of layout version number.
Other minor fixes/cleanup.
NOTE: This commit changes the file format for VDS, all files must be
re-generated.

Tested: ummon
2015-09-01 08:03:33 -05:00
Dana Robinson
59aa015d9f [svn-r27638] Merged r27500-27631 from trunk. 2015-08-31 23:36:17 -05:00
Quincey Koziol
2c91cbecc6 [svn-r27630] Description:
Bring in changes from the trunk, through r27628.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial
    (h5committest not required on this branch)
2015-08-31 15:14:57 -05:00
Allen Byrne
81ca9e4c79 [svn-r27627] Change hardcoded HDF5TESTEXPRESS value to use a CMake variable HDF_TEST_EXPRESS. 2015-08-31 15:08:56 -05:00
Dana Robinson
c226e58005 [svn-r27626] Various minor warning fixes before major SWMR and VDS merges.
gcc 4.9.2 was used to create the warning list

- implicit casts
- shadowed variables
- various enum issues
- other minor fixes (comments, unused macros, etc.)

Tested on: h5committest
2015-08-31 14:04:23 -05:00
Scot Breitenfeld
e6f9fc5f7f [svn-r27625] Added preprocessor commands for PGI compiler.
tested: h5committest
2015-08-31 13:49:17 -05:00
Neil Fortner
1d3a7ec651 [svn-r27606] Merge revisions 27593 through 27605 from trunk to vds branch.
Tested: ummon
2015-08-28 15:03:07 -05:00
Neil Fortner
1847391fc5 [svn-r27605] Fix potential memory error when using a dataspace that was created with
H5Screate and had its extent set by H5Sextent_copy.

Tested: jam, ostrich (h5committest)
2015-08-28 14:43:03 -05:00
Neil Fortner
c365b9a59f [svn-r27593] Merge revisions 27453 through 27592 from trunk to vds branch.
Tested: ummon
2015-08-27 12:06:54 -05:00
Allen Byrne
c491cf01bf [svn-r27590] Fix typo 2015-08-27 08:41:32 -05:00
Dana Robinson
606c16e111 [svn-r27587] Added a new API call (H5is_library_threadsafe) to the library. This call can
be used to determine at runtime if the library was built with thread-safety.

Fixes HDFFV-9496

Tested on: h5committest
2015-08-26 12:05:57 -05:00
Allen Byrne
6635d4c003 [svn-r27586] HDFFV-9497: Add back ALLOW_UNSUPPORTED OPTION.
Added new option SKIP_HDF5_FORTRAN_SHARED
2015-08-26 11:48:42 -05:00
Dana Robinson
2e6100fb23 [svn-r27572] Removed VMS-specific code from the library.
The only remaining code consists of a few floating-point tests
that rely on pre-generated and checked-in VMS files. These have
been left alone, even though they will not be possible to
recreate, since testing VMS float behavior is still important.

Tested on: h5committest
2015-08-24 15:19:39 -05:00
Jerome Soumagne
ab7d724ffd [svn-r27548] Revert r27545 2015-08-21 17:44:22 -05:00
Neil Fortner
32bf83f1cf [svn-r27546] Add tests for H5O__dset_bh_info (H5Oget_info) and unlimited selections in a
region reference.

Tested: ummon
2015-08-21 14:57:29 -05:00
Jerome Soumagne
7ce2d52cf6 [svn-r27545] Add first support for _Bool and make hbool_t a "real" _Bool if available
Fix tests accordingly
2015-08-21 13:52:30 -05:00
Neil Fortner
1821b64d49 [svn-r27543] Add tests to cover remaining code coverage assertions in H5Shyper.c.
Add more tests for unlimited selections.
Fix bug related to empty unlimited source dataset.

Tested: ummon
2015-08-20 17:18:52 -05:00
Neil Fortner
e3bea91686 [svn-r27538] Add tests to cover remaining code coverage assertions in src directory except
for those in H5Doh.c and H5Shyper.c.

Tested: ummon
2015-08-20 11:38:05 -05:00
Neil Fortner
6909d2033f [svn-r27527] Add tests to hit code coverage assertions in H5Olayout.c.
Fix issue in VDS delete routine.

Tested: ummon
2015-08-19 11:21:27 -05:00