* commit 'fb5c13d59c8f17dca9bbe0e35e00920be2690af3':
Merge of recent develop work to 1.10 branch: * H5FD_FEAT_DEFAULT_VFD_COMPATIBLE VFD feature flag (HDFFV-10214) * H5FDdriver_query() API call (HDFFV-10215) * Fix to skip SWMR tests that when the current VFD is not compatible with the default VFD (HDFFV-10197) * Removed obsolete compiler versions from config/gnu-flags (HDFFV-9937) * Many warning fixes
* H5FD_FEAT_DEFAULT_VFD_COMPATIBLE VFD feature flag (HDFFV-10214)
* H5FDdriver_query() API call (HDFFV-10215)
* Fix to skip SWMR tests that when the current VFD is not compatible
with the default VFD (HDFFV-10197)
* Removed obsolete compiler versions from config/gnu-flags (HDFFV-9937)
* Many warning fixes
* commit 'ef60bcd50e5cd3f66b7cd91a6b816a59c36922e2':
Test split tbitfields.h5.xml into big and little endian files. tbitfields.h5.xml was removed from MANIFEST but the file still needs to be removed, as it was in the develop branch.
* commit '938dc838b8ad1e815ea6eda820411cb22dfe56c6':
Test split tbitfields.h5.xml into big and little endian files. tbitfields.h5.xml was removed from MANIFEST but the file still needs to be removed, as it was in the develop branch.
* commit '635e8c5377ded6201061e1dc819526cd205f06ed':
merge from develop and apply HDFFV-8611
HDFFV-8611 add autotools test
Remove obsolete function
HDFFV-8611 change h5repack to save the root group creation order Added test and new arguments to control the the input file parsing.
* commit '8dd40ba371f3a299ed98ab8e7e7f34f967e91d55':
Move declaration before executable statement
HDFFV-9055 regenerate file for 1.10
HDFFV-9055 add test files
HDFFV-9055 Handle H5T_ARRAY types Create variables just for diff_array function Whitespace updates
HDFFV-10128 Fixed string length with no null fixed
HDFFV-9995 Clarify help text
* commit '6403b313d46ec6db46fcff2aaa4a9238f8265d85':
Incorporate additional code changes for the H5DOread_chunk patch from GE Heathcare (HDFFV-9934) This is the similar set of changes that was checked in to 1.8 branch: Incorporate the code changes that were missing from the original patch: (1) Additional tests in hl/test/test_dset_opt.c (2) Fix in src/H5Dchunk.c for direct access when an entry is in chunk cache but not dirty Tested on platypus, ostrich, kituo, mayll, osx1010test, moohan, quail, emu.
This is the similar set of changes that was checked in to 1.8 branch:
Incorporate the code changes that were missing from the original patch:
(1) Additional tests in hl/test/test_dset_opt.c
(2) Fix in src/H5Dchunk.c for direct access when an entry is in chunk cache but not dirty
Tested on platypus, ostrich, kituo, mayll, osx1010test, moohan, quail, emu.
* commit '1d786206df53942a3a3dbd538b369c94a632050d':
Removed redundant assignement.
Fixes the chunk overwrite bug (HDFFV-10187) and adds a new H5DO HL test.
* commit '228939e7315cc9644e158fc246f4908301d77a35':
Call to H5Dopen has H5dopen2 arguments at line 12704 of test/dsets.c - changed to H5Dopen2 to fix failure with --with-default-api-version=v16 configure option.
* commit '1a4bda1bd824df2da1e8c3441881fb7fca6a4413':
Set the HDF5_GENERATE_HEADERS CMake option to default to ON and removed the option from the CMake cache init files.
* commit 'd94405ded4451831e4fc90ceff70acbc1e6a8f9c':
Fix for HDFFV-10051 Fix missing declaration for H5D__layout_compact_dirty_test(). Tested on mayll and osx1010test.
Fix for the two issues reported in HDFFV-10051 Modifications made based on the review comments from pull request #494 Tested on moohan, mayll, kituo, platypus, ostrich, osx1010test, quail, emu.
Fix for the two issues reported in HDFFV-10051: (1) Repeated open/close of a compact dataset fails due to the increment of ndims in the dataset structure for every open. --This is done only for chunked dataset via H5D__chunk_set_sizes(). (2) layout "dirty" flag for a compact dataset is not reset properly after flushing the data at dataset close. --Reset the "dirty" flag before flushing the message to the object header via H5O_msg_write(). Tested on moohan, kituo, platypus, ostrich, osx1010test, quail, emu.
(1) Repeated open/close of a compact dataset fails due to the
increment of ndims in the dataset structure for every open.
--This is done only for chunked dataset via H5D__chunk_set_sizes().
(2) layout "dirty" flag for a compact dataset is not reset
properly after flushing the data at dataset close.
--Reset the "dirty" flag before flushing the message to the object header
via H5O_msg_write().
Tested on moohan, kituo, platypus, ostrich, osx1010test, quail, emu.
