Commit Graph

339 Commits

Author SHA1 Message Date
Dana Robinson
7462a7ef1c [svn-r26329] Merge of r26069, r26070, and r26072 from the features/autotools_rework
branch.

Removed the configure option that allows selective disabling of individual
internal filters (fletcher32, shuffle, etc.).

This feature mucked up the code with a lot of #ifdefs, saved very little space,
and was not scalable to a general scheme for library size reduction. We've
decided to remove the feature while we investigate a more general scheme for
decreasing the library size.

Part of: HDFFV-9086

Tested on: h5committest
2015-02-27 07:50:38 -05:00
Mohamad Chaarawi
c4044e0c85 [svn-r26303] remove files with .clog2 extension generated by MPE when doing make clean. 2015-02-25 13:48:31 -05:00
Scot Breitenfeld
b28b5fade9 [svn-r26188] Merged autotools fixes into the trunk:
HDFFV-9089, HDFFV-9091, HDFFV-9092, HDFFV-9094, HDFFV-9095
2015-02-16 12:17:49 -05:00
Mohamad Chaarawi
74fbb9e327 [svn-r26180] merge configure fixes for HDFFV-9068,9069,9096,9097,9135 from autotools_rework branch:
- Remove Infering parallel compilers (C and Fortran) from configure.ac
- Remove restriction to build shared with parallel
- Cleanup parallel sections in configure.ac
- remove large file support checks
- MPE fixes.

tested with h5committest.
2015-02-16 11:17:03 -05:00
Mohamad Chaarawi
06ef71a37f [svn-r25397] - remove configure checks for MPI_File_get_size and Big
MPI_File_set_size as they are supported by most MPI implementations.
- fix bug in t_mpi.c (HDFFV-8856)
2014-07-07 13:22:48 -05:00
Larry Knox
c6e3e68297 [svn-r25117] Removed LT_ADD_LIBHDF5_DEPENDENCY configure conditional to roll back fix for removing rpaths from l
ib files.  The fix also removed dependencies on libhdf5, etc. when the --disable-sharedlib-rpath co
nfigure option was invoked.
Added instead configure variable hardcode_into_lib=no.  This removes rpath from lib files on Linux
and solaris machines.

Tested with h5committest on jam, koala, ostrich and platypus (cmake), and with configure option --disable-sharedlib-rpath on emu, platypus and quail.
2014-04-25 16:59:53 -05:00
Dana Robinson
5ae7ad342d [svn-r24993] Purpose:
Adds write tracking to the core VFD, which can be configured
via the H5Pset/get_core_write_tracking() API call. When enabled
and writing to the backing store is enabled, this feature will
track writes and only write out the changed bytes on flush/close.

Tested on:
    32-bit LE linux (jam) w/ Fortran and C++
    64-bit BE linux (ostrich)
    64-bit Darwin 12.5.0 (kite)

All were tested using the core VFD w/ paging on (core_paged
in the VFD list). Make check-vfd was also tested on jam.
2014-04-08 22:35:16 -05:00
Allen Byrne
c6fe8c70b2 [svn-r24932] HDFFV-8290: Remove unnecessary $(srcdir) and use AM_CPPFLAGS instead of INCLUDES. Update automake to 1.14.1
h5committest
2014-03-31 12:07:05 -05:00
Quincey Koziol
2e4302818a [svn-r24864] Description:
Remove all traces of MPI-POSIX VFD and GPFS detection/code.

    Remove remaining traces of stream VFD.

    Remove testpar/t_posix_compliant test (it's not actually verifying anything).

    Clean up H5D__mpio_opt_possible() further.

    Moved environment variable that disables MPI collective operations into
MPI-IO VFD (instead of it being in src/H5S.c).

    A few other small code cleanups.

Tested on:
    Mac OSX/64 10.9.2 (amazon) w/parallel & serial
2014-03-21 18:02:24 -05:00
Allen Byrne
819b8099e2 [svn-r24392] Cleanup testfiles from scripts. Update lists of files to be cleaned. CMake update to clean testfiles.
Tested: local cmake, autools, and h5committest
2013-11-01 16:15:37 -05:00
Larry Knox
ab239810e1 [svn-r24194] Don't add hdf5 library dependencies to lib files when --disable-sharedlib-rpath configure option is invoked. Fix for HDFFV-8276.
Tested with h5committest and on hdf-duck.
2013-09-23 20:14:24 -05:00
Raymond Lu
bada3f7a86 [svn-r23656] Issue 8380 H5Zunregister caused seg fault: I added some protection measures:
1. If any opened object uses the filter, let it fail.
  2. Flush all opened files to push any cached data to files.

Tested with h5committest.
2013-04-29 14:23:04 -05:00
Raymond Lu
72e84fcd82 [svn-r23513] I added a test case in plugin.c for testing using filter for groups and created a dummy filter library for this test case.
Tested on jam and koala.
2013-04-01 18:28:48 -05:00
Larry Knox
e679eed61b [svn-r23511] Replaced install-data-local with install-exec-hook in test/Makefile.am.
tested with h5committest
2013-04-01 17:45:02 -05:00
Raymond Lu
ed621aae38 [svn-r23494] I added another filter library dynlib2.c for plugin.c test. The test script moves the libdynlib2.so to /tmp then runs
plugin.c.

Tested on jam and koala.
2013-03-29 15:59:15 -05:00
Raymond Lu
3374ffecf8 [svn-r23482] I changed the plugin library to be built as shared library only when configure enables shared. libtool will install the shared plugin library. I put a remove command in test/Makefile.am to delete the unnecessary plugin library.
Tested on jam, koala, and emu.
2013-03-28 15:14:11 -05:00
Raymond Lu
5b12b8e122 [svn-r23465] I moved dynlib1.c to test/ directory and revised the Makefile.am in test/. I added the condition to skip
plugin.c test when the library is built for static.

Tested on jam, koala, and emu.
2013-03-27 10:39:16 -05:00
Raymond Lu
08359be858 [svn-r23347] ported revision 23248:23346 from the trunk 2013-03-13 17:34:23 -05:00
Raymond Lu
55822485c6 [svn-r23346] First commit for DESY project. It has the basic functionality of loading dynamically filter libraries and a simple test for it.
Tested on koala.
2013-03-13 14:35:26 -05:00
Larry Knox
33504deb83 [svn-r22908] Reverted changes in revision 22819
Tested with h5committest on jam, koala and ostrich.
2012-10-16 16:38:58 -05:00
Larry Knox
c5371d7618 [svn-r22819] Added H5BLD_STATIC and HDF5_USE_SHLIB to configure.ac so that if configured with --disable-static the default for HDF5_USE_SHLIB in the compile scripts will be changed to yes. This is a fix for HDFFV-8141, where the compile scripts try to link to non-existant static hdf5 libraries.
Tested on jam,koala,ostrich(h5committest) and other THG machines.
2012-09-26 23:49:19 -05:00
Quincey Koziol
6a89177036 [svn-r22807] Description:
Add encode/decode API routines for property lists: H5Pencode/H5Pdecode.

Tested on:
        FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode
        FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, w/threadsafe, in production mode
        Linux/PPC 2.6 (ostrich) w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-ia64 2.6 (ember) w/Intel compilers, w/parallel, C++ & FORTRAN,
                in production mode
        Mac OS X/32 10.7.3 (amazon) in debug mode
        Mac OS X/32 10.7.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
        Mac OS X/32 10.7.3 (amazon) w/parallel, in debug mode
2012-09-25 10:47:25 -05:00
Allen Byrne
1f8fb63581 [svn-r22709] HDFFV-8129: reconfigured on jam, Remove overloading of autotools TESTS var, rename configure.in to configure.ac, convert test scripts from hard *.sh to configure managed *sh.in files.
Tested: h5committest
2012-08-23 11:07:43 -05:00
Larry Knox
edf83e5d1f [svn-r22706] Updated autotools: autoconf 2.69, automake 1.12.3, m4 1.4.16, libtool 2.4.2
Tested THG machines.
2012-08-22 00:00:32 -05:00
HDF Tester
02a0bd53e8 [svn-r22487] Snapshot version 1.9 release 122 2012-06-24 09:29:36 -05:00
Quincey Koziol
982f1ff8ff [svn-r22229] Description:
Add 'H5O_mcdt_search_cb_t' to bin/trace script and re-run the
bin/reconfigure script.

Tested on:
        FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode
        FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
2012-04-01 17:32:04 -05:00
Quincey Koziol
c2a9dcb897 [svn-r22219] Description:
Merge "file image" changes from feature branch back to trunk.

Tested on:
    Mac OSX/64 10.7.3 (amazon) w/debug
    (h5committest upcoming)
2012-03-31 03:49:35 -05:00
Scot Breitenfeld
9eb1d607d8 [svn-r21249] Description: Part II of F2003 branch merge into the trunk.
Ran bin/reconfigure to update the Makefile.in in directories not part of the fortran directory check=in. Updates Makefile.in due to changes made in configure.in for the Fortran 2003 additions.

Tested on all platforms run under daily tests.
2011-08-18 09:38:53 -05:00
Quincey Koziol
de10631577 [svn-r21120] Description:
Check in ugly version of fix for Jira #7638.  I'm going to leave the issue
open in Jira and when the library has been refactored to use shared file
pointers (instead of top file pointers) for file operations, I'll uncomment
the check in src/H5Oshared.c

Tested on:
    Mac OS X/32 10.6.8 (amazon) w/debug
    (too small for h5committest)
2011-07-18 17:43:30 -05:00
Raymond Lu
4df63636e3 [svn-r21017] This is a follow-up checkin for r21015 (bug fix for Issue 2598). I added two minor changes: 1. put the output file for
vfd.c test in the list for cleanup in Makefile.am; 2. put the data file in the list in CMakeLists.txt.

Tested on jam - simple change.
2011-06-22 15:05:17 -05:00
Mike McGreevy
98362b664c [svn-r20504] Purpose:
General shared library improvements for CYGWIN / AIX

Description:

    Shared libraries are disabled on both CYGWIN and AIX due
    to inability to build them correctly. Part of the problem
    in both of these situations is the lack of the libtool
    flag -no-undefined, which tells libtool that all needed
    symbols are defined at link time (a requirement on these
    systems) and that it's okay to build shared libraries.

    Another problem are lack of dependencies between wrapper
    libraries and core C HDF5 library.

    This patch addresses both of these by fixing configure to
    add in -no-undefined flag for libtool during linking and
    adds automake dependencies in the Makefile.am files.

    After testing, both CYGWIN and AIX now generate shared
    libraries, but there are still some test failures in each.
    (cache_api, dt_arith, and testerror.sh on CYGWIN, and
    fortran tests on AIX).

    Even though the shared libraries are not quite perfect,
    this is a general improvement to what we had before, so
    I'm applying the patch anyways. Note that default behavior
    of shared libraries on these systems being disabled has
    NOT been changed and requires the use of the
    --enable-unsupported to attempt to build them.

    We will need to address the test failures in each
    architecture prior to formally supporting shared
    libraries on each.

Tested:

    h5committested & CYGWIN tested (on bangan)
    (AIX tested by Albert on bp-login2)
2011-04-14 16:21:59 -05:00
Mike McGreevy
a45c7424b2 [svn-r20502] Purpose:
Add "silent make" mode configure option.

Description:

    Automake 1.11 has a new option available that allows for a
    silent make mode. This functionality needs to be explicitly
    enabled in configure.in via the use of the automake macro
    AM_SILENT_RULES, which is what this commit is adding.

    This introduces a new configure option: 

        --{en|dis}able-silent-rules

    This option is on by default, and simplies compile and link
    line outputs when building the library. Disabling this option
    will print full "verbose" output (i.e., full compile and
    linking lines for each target).

Tested:

    This was tested on jam & h5committested
2011-04-14 14:45:57 -05:00
Mike McGreevy
e006157deb [svn-r20475] Purpose:
- Revise shared Fortran library disabling scenarios in configure
    - Improve configure output summary

Description:

    Shared Fortran libraries are not supported on Mac, but were being
    disabled by configure in a way that also forced the C libraries
    to be static-only. This has been fixed, so now only shared Fortran
    is disabled while shared C can remain.

    This prompted two additional changes:

        1. While working on the check that addresses whether or not
           shared Fortran libraries are allowed, removed old and no
           longer needed check(s) that disable shared Fortran
           libraries with HP, Intel 8, PGI, and Absoft compilers.
           (Essentially, Mac is the only situation in which Fortran
           shared are disabled by configure.)

        2. Having two different states of libraries (i.e. shared C
           library with static-only Fortran library) was not apparent
           in the configure summary, which labeled all libraries as
           either shared and/or static. I've added lines to both the
           C++ and Fortran output sections to list shared/static-ness
           of these libraries specifically.

    Additionally, I've made sure that the new --enable-unsupported
    configure option correctly overrides configure if it tries to
    disable a shared library.

Tested:

    jam, fred, & h5committest
2011-04-11 16:00:38 -05:00
Raymond Lu
a67dbbaf81 [svn-r20469] Bug 1386 - allow dimension size to be zero even though it isn't unlimited. This is a follow-up checkin for r20440:
1. I added a test case of extending dataset of zero dimension size and shrinking back to zero dimension size.
  2. I updated the Makefile to include the new data file to be cleaned up.

Tested on jam - relatively simple.
2011-04-11 10:59:41 -05:00
Neil Fortner
0863d30372 [svn-r20064] Purpose: Implement external file cache
Description:
Implements a cache of files opened through external links.  Adds the public
functions H5Pset_elink_file_cache_size(), H5Pget_elink_file_cache_size(), and
H5Frelease_file_cache().

Tested: jam, amani, heiwa (h5committest), fedora 64.
2011-02-08 12:32:56 -05:00
Larry Knox
72634b34e4 [svn-r19839] Updated to libtool v 2.4, autoconf 2.68 and m4-1.4.15.
Tested with h5committest on amani, heiwa, and jam.
2010-11-23 17:56:59 -05:00
Vailin Choi
0c589bf7b5 [svn-r19781] Fix for bug #1930:
1) Move the test for H5D_EXT_PREFIX in links.c to a separate file: links_env.c
2) links_env.c will be used by testlinks_env.sh to test for the environmental
   variable H5D_EXT_PREFIX in searching for the external linked file.
2010-11-14 23:04:28 -05:00
Mike McGreevy
c002883bcc [svn-r19617] Purpose:
Merge accum_tests branch back to the trunk.
Description:
    Changes consist of addition of tests for H5Faccum.c source code,
    as well as some fixes that address some discovered bugs in the
    metadata accumulator on several corner cases.
Tested:
    h5committested
2010-10-15 14:16:41 -05:00
Larry Knox
155b00d8ff [svn-r19506] Bring changes from revisions 19408, 19421, and 19442 from branches/hdf5_1_8 to trunk. These revisions reorganize the compile scripts using h5cc.in, h5fc.in, and h5c++.in, add checks for installed examples to the scripts that run them after installation, and add DESTDIR for install as needed for RPMs.
Tested on amani, heiwa and jam by h5committest and with CYGWIN.
2010-10-04 12:15:30 -05:00
Quincey Koziol
f93f533fd5 [svn-r19402] Description:
Correct Bz#1968 (Problem when opening new format file with
H5F_LIBVER_EARLIEST) by initializing symbol table leaf information in a
more universal way.  Also cleaned up other superblock initialization a
little bit while I'm here.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, w/threadsafe, in production mode
        Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
        Mac OS X/32 10.6.4 (amazon) in debug mode
        Mac OS X/32 10.6.4 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
        Mac OS X/32 10.6.4 (amazon) w/parallel, in debug mode
2010-09-16 15:01:08 -05:00
Larry Knox
47c792faa0 [svn-r19366] Updated autoconf to version 2.6.7, libtool to version 2.2.10, and m4 to version 1.4.14. Also added m4 directory for m4 macros according to autoconf suggestion.
Tested with h5committest on amani, jam, and heiwa, and on linew.
2010-09-10 10:45:07 -05:00
Raymond Lu
073eb187d6 [svn-r19363] When mandatory filter failed to write data chunks, the dataset
couldn't close (bug 1260).  The fix releases all resources and closes
the dataset but returns a failure.

Tested with h5committest - jam, heiwa, amani.
2010-09-09 13:15:36 -05:00
Neil Fortner
c22b8a94f2 [svn-r19076] Purpose: Fix bug 1951
Description:
A bug introduced in 1.8.5 causes local heap data blocks to be mis-aligned when
sizeof_offsets + 2*sizeof_lengths is not a multiple of 8.  In this case, the
address of the data block as stored in the heap prefix is aligned but the actual
data block is not.  This causes files created with these sizes to be corrupted,
and prevents uncorrupted files with these sizes to be unreadable.  Modified
local heap code to account for alignment.

Tested: jam, amani, linew (h5committest)
2010-07-16 11:32:49 -05:00
Larry Knox
10a8b060ca [svn-r19059] Brought changes from hdf5_1_8 to add version information for fortran and c++ compilers in libhdf5.settings file and configure output (r18836), to install examples as part of make install (r18680), and to provide scripts to compile and run the examples after they are installed (r18817).
Tested with new/h5committest on amani, heiwa, and jam.
2010-07-08 21:52:14 -05:00
HDF Tester
cb72139f74 [svn-r19022] Snapshot version 1.9 release 70 2010-06-20 12:05:42 -05:00
Mike McGreevy
60ecd356b2 [svn-r19005] Purpose:
Commit metadata tagging framework.

Description:

    This check-in contains a new framework whose goal is to apply
    a tag value to each new entry in the metadata cache as it is created. 
    This tag value is such that it relates each piece of metadata to the 
    HDF5 object that it belongs to (dataset, group, et cetera).

    This changeset includes the framework that applies the tags as 
    well as a suite of tests to verify correct tag application, though does
    not yet make use of the tag values to flush/evict individual objects.

    Please refer to the "flush/evict individual objects" RFC for further
    discussion of these changes.

Tested:

    jam, amani, linew (h5committest)
    liberty, abe, blue print
2010-06-15 15:00:22 -05:00
Mike McGreevy
f0ecd71307 [svn-r18709] Purpose:
Improve configure's large-file support control.

Description:

    Modified configure to now attempt to add defines necessary for
    supporting largefiles on all systems, instead of solely on linux. This 
    is in response to user requests to enable largefile support on Solaris 
    by default, as well as to give extra control on AIX (instead of just 
    jamming the necessary flag into the config files).

    The old --enable-linux-lfs flag has been removed in favor of the 
    --enable-largefile flag (enabled by default), which can be used on all
    platforms.

    On systems where large files cannot be supported in this manner,
    configure will report as such.

Tested:

    h5committest
    AIX (NCSA's blue_print machine)
    duty, liberty, and linew.
2010-05-05 12:34:26 -05:00
Mike McGreevy
0cf2a97cfb [svn-r18579] Purpose:
Autotool Upgrade / Libtool Bug Fix

Description:

    Updated autotools referenced in bin/reconfigure as follows:

    Autoconf 2.64 --> Autoconf 2.65
    Automake 1.11 --> Automake 1.11.1
    Libtool 2.2.6a --> Libtool 2.2.6b-mcg

    The referenced libtool version is a custom version of 2.2.6b. It 
    has been tweaked to fix a bug in libtool that occurs
    when using PGI 10.0 compilers. A check incorrectly categorizes
    the C++ compiler as version 1.0 instead of 10.0, and the link
    line is subsequently set up incorrectly and fails to compile.

    A patch has been made available and will be included in the next
    release of libtool, but in the meantime I've applied the patch to a custom
    installation as indicated above. This bin/reconfigure now references
    the custom installation, and the resulting configure script will correctly
    categorize the PGI 10.0 C++ compiler.

    Ran bin/reconfigure to regenerate configure and makefiles.

Tested:

    jam and amani with PGI 10.0 compilers.
    h5committest
2010-04-15 16:17:22 -05:00
Quincey Koziol
bcd6c3f7cc [svn-r18420] Description:
Re-run bin/reconfigure to catch up with recent rearrangements, remove some
unused srcdir headers and duplicated code in main test header.

Tested on:
    Mac OS X/32 10.6.2 (amazon) w/debug & prod
    Linux/32 2.6 (jam)
2010-03-18 07:45:29 -05:00
Quincey Koziol
fd547cd11f [svn-r18413] Description:
Unify srcdir handling for test executables and allow them to use the srcdir
setting from configure time without requiring the 'srcdir' environment variable
be set (although you still can, to override the built in setting).  Attempted
to get this right for Windows builds also.

    Also add dependency between src/H5Tinit.c and src/libhdf5.settings, so
that the test/testcheck_version.sh script works correctly.

Tested on:
    Linux/32 2.6 (jam)
    Mac OS X/32 10.6.2 (amazon)
2010-03-17 16:38:20 -05:00