mirror/hdf5
2
0
Fork 0
mirror of https://github.com/HDFGroup/hdf5.git synced 2024-11-27 02:10:55 +08:00
Code Issues Packages Projects Releases Wiki Activity
14,494 Commits 89 Branches 144 Tags 733 MiB
5af1fa67c4
Commit Graph

14494 Commits

This Branch
This Branch
All Branches
Author SHA1 Message Date
Allen Byrne
5af1fa67c4 [svn-r27300] Add h5repack and h5diff VDS tests 2015-06-30 12:58:57 -05:00
Neil Fortner
2522e278a8 [svn-r27284] Modify VDS implementation to always use FAPL and DAPL from VDS file and dataset 
to open source files and datasets, instead of using the default property lists.
Modify VDS to reject attempts at parallel I/O, fix parallel compile error.
Modify VDS to not write fill value to memory buffer if the fill value is
undefined.
Other minor fixes/cleanup.

Tested: ummon
 2015-06-25 14:39:08 -05:00
Allen Byrne
224c6cbe59 [svn-r27266] Change tests to use simple mode - eliminates native type use. 
Combine float checks and int checks to eliminate possible conflicts
 2015-06-22 13:47:43 -05:00
Allen Byrne
5a1be8e235 [svn-r27265] corrected test params 2015-06-22 11:03:14 -05:00
Neil Fortner
6063aa87e1 [svn-r27256] Merge revisions 27102 through 27255 from trunk to vds branch. 
Tested: ummon
 2015-06-19 17:16:45 -05:00
Allen Byrne
48e1bbb0f8 [svn-r27252] Fix whitespace 2015-06-19 10:57:38 -05:00
Elena Pourmal
3b1acf484e [svn-r27249] Used versioned APIs to fix the daily tests errors with the --with-default-api-version=v16 builds. 
Tested on jam.
 2015-06-19 08:07:30 -05:00
Elena Pourmal
1e7ab81ff2 [svn-r27248] Daily tests in the VDS brnach reported missing file in MANIFEST. Fixed. 2015-06-19 07:37:58 -05:00
Neil Fortner
7cf40ce5e4 [svn-r27246] Remove "clipped" status from unlimited selections, decoupling them from the 
extent.
Improve algorithm for calculation of VDS extent by removing the need for a
temporary copy of a dataspace.
Other minor fixes/cleanup.

Tested: ummon
 2015-06-18 17:18:29 -05:00
Elena Pourmal
b32c1bc3ff [svn-r27245] Maintenance: Eiger example had wrong printf type of name (had dimension number in it). Fixed. 
Tested on jam.
 2015-06-18 16:54:51 -05:00
Mohamad Chaarawi
c614e178e3 [svn-r27243] fix problem with encoding/decoding external fapl for lapls. 2015-06-18 15:36:19 -05:00
Allen Byrne
7fdb38eb6f [svn-r27239] Add function prototype for local function 2015-06-18 08:52:52 -05:00
Allen Byrne
cf7c5123cb [svn-r27238] Add function prototype for local function 2015-06-18 08:52:35 -05:00
Quincey Koziol
f30ab55f41 [svn-r27237] Description: 
Merge v3 metadata cache changes to trunk.  Yay! :-)

Tested on:
    MacOSX/64 10.10.3 (amazon) w/serial & parallel
    Linux/32 2.6.x (jam) w/serial & parallel
    (daily tested on branch)
 2015-06-17 19:58:49 -05:00
Allen Byrne
4878a00ac2 [svn-r27236] The vds h5diff files 2015-06-17 15:28:05 -05:00
Allen Byrne
202fd2b6c1 [svn-r27235] Add vds h5diff tests 2015-06-17 15:22:25 -05:00
Allen Byrne
bea58674e9 [svn-r27234] Add layout test from virtual to Contiguous and Compact generated files to clearall 2015-06-17 15:05:00 -05:00
Allen Byrne
5ae9dc0369 [svn-r27233] Add layout test from virtual to Contiguous and Compact 2015-06-17 14:37:40 -05:00
Neil Fortner
c986d41406 [svn-r27231] Fix bug in configure that prevented running make. 
Tested: ummon
 2015-06-17 13:59:23 -05:00
Allen Byrne
5b4b4650c6 [svn-r27229] remove copy-paste errors from list 2015-06-17 13:20:39 -05:00
Neil Fortner
17078f2b9d [svn-r27224] Fix bug that prevented reading from datasets with unlimited mappings with 
missing source datasets.  Decided not to attempt to open the source dataset in
this case, as doing so could create issues related to the sizing of the VDS.
Users should call H5Dget_space to open these datasets.  No regression test yet.

Tested: ummon
 2015-06-17 10:25:34 -05:00
Elena Pourmal
fc0fba145e [svn-r27220] Maintenance: Added copyrigth; removed read buffer initialization since fill value feature works now. 
Tested on jam.
 2015-06-16 16:42:48 -05:00
Allen Byrne
616106ade3 [svn-r27219] Add h5dump and h5 ls VDS test scripts to autools configure 2015-06-16 16:25:03 -05:00
Allen Byrne
3d5c3851a3 [svn-r27218] Add VDS tests to h5ls 2015-06-16 16:15:55 -05:00
Barbara Jones
6e9e9e0dd2 [svn-r27216] The comments in this example were incorrect regarding the resulting 
dataset. They were updated to match the output of the file. (HDFFV-637)
 2015-06-16 13:32:04 -05:00
Neil Fortner
91eb17db8e [svn-r27215] Fix issue where % characters could not be used in non-printf mappings. 
Other minor fixes/cleanup.

Tested: ummon
 2015-06-16 12:27:20 -05:00
Dana Robinson
4f231ddc9b [svn-r27214] Fixed a bug on Windows where dcpls were set to be chunked and not virtual. This was due to a simple copy-paste issue in the initializer that is used when C99 initializers are not available. 
Also fixed a dims array size error in the vds test.

Tested on: 64-bit Win7 with VS2013
 2015-06-16 12:02:35 -05:00
Mohamad Chaarawi
afb85e30e5 [svn-r27207] use "closing" flag instead of always TRUE in the truncate call. 2015-06-15 14:29:30 -05:00
Mohamad Chaarawi
f34bdad87c [svn-r27206] fix for HDFFV-9418. 
- Moving truncate to H5F_flush() where it was done a long time ago. 
 - Add a second H5AC_flush() call after the truncate is done to make sure we write the correct EOA.

tested with h5committest
 2015-06-15 13:35:00 -05:00
Quincey Koziol
adbb64c6cd [svn-r27204] Description: 
Clean up compiler warnings before merging in v3 metadata cache changes
from branch.

Tested on:
    MacOSX/64 10.10.3 (amazon) w/serial & parallel
    Linux/32 2.6.x (jam) w/serial & parallel
 2015-06-15 11:07:38 -05:00
Allen Byrne
b5a6740703 [svn-r27202] Except one file is used by other tests! 2015-06-15 08:10:14 -05:00
Allen Byrne
83208611cb [svn-r27201] Changed location of packed bits testfiles 2015-06-15 07:59:14 -05:00
Quincey Koziol
65e76690fd [svn-r27199] Description: 
Large code cleanups and optimizations, in preparation for the upcoming
v3 metadata cache merge.

Tested on:
    MacOSX/64 10.10.3 (amazon) w/serial & parallel
    Linux/32 2.6.x (jam) w/serial & parallel
 2015-06-12 22:40:33 -05:00
Vailin Choi
e29904660a [svn-r27198] Set "entire_chunk" to false in H5D__chunk_write() for point selection as duplicate points are not checked to determine 
that it is really an "entire chunk".  The bug appears from running the mdset.c test. This is a short-term fix for the problem.
 2015-06-12 17:55:18 -05:00
Neil Fortner
4117cfe2b9 [svn-r27197] Improve performance of "printf" VDS with selections in the file space - the 
library no longer iterates over all source datasets in the printf mapping, it
now only looks at the ones that could be involved in I/O (the ones whose bounds
overlap with the selection in the unlimited dimension).

Tested: ummon
 2015-06-12 17:04:35 -05:00
Allen Byrne
d92c74b4aa [svn-r27196] Move pbbits file to subfolder 2015-06-12 16:33:27 -05:00
Allen Byrne
78e128c544 [svn-r27195] Add h5dump cmake tests and files. 
Add tools gen cmake files
move testfiles for pbits to subdir as well as vds

Tested: local linux
 2015-06-12 16:29:20 -05:00
Neil Fortner
9786fe2f61 [svn-r27192] Improve support for printf selections (support partial blocks with 
H5_VDS_FIRST_MISSING)
Add test for this
Rework VDS code to not depend on unlimited selections having a "clipped" state
in preparation for removing the clipped state from unlimited selections.
Other bug fixes/cleanup

Tested: Kubuntu 64 (home computer)
 2015-06-11 23:26:53 -05:00
Dana Robinson
aa4e3e3985 [svn-r27191] Merged r26781 to r27185 from trunk 
Tested on: 64-bit Ubuntu Linux VM w/ gcc 4.8.2
    (C++ and Fortran 2003 also tested)
 2015-06-11 14:18:52 -05:00
Mohamad Chaarawi
b9f2a18b5a [svn-r27185] fix more instances where both mpi is_initialized and is_finalized need to be checked before making any MPI calls. 
tested with h5committest.
 2015-06-10 12:57:32 -05:00
Neil Fortner
bf8942c7e9 [svn-r27174] Fix bug in H5S__hyper_project_intersection that affected empty selections. 
Tested: ummon
 2015-06-09 15:52:03 -05:00
Allen Byrne
0f4e97907c [svn-r27172] Change disable to skip big test on cygwin 2015-06-09 13:52:43 -05:00
Allen Byrne
84311eb701 [svn-r27171] Disable big test on cygwin 2015-06-09 13:48:03 -05:00
Dana Robinson
349ad0d74d [svn-r27166] Updated MANIFEST to include test/vds.c and tools/misc/vds files. 2015-06-08 22:22:43 -05:00
Mohamad Chaarawi
bf3b382df7 [svn-r27163] update manifest for newly added file. 2015-06-08 16:10:14 -05:00
Mohamad Chaarawi
929e8ce128 [svn-r27162] fix for HDFFV-9412: 
- Check for mpi is_initialized and is_finalized before making MPI calls in init/terminate of HDF5.
- Add a test to make sure we can make serial HDF5 calls from rank 0 after MPI_Finalize is called.

tested with h5committest
 2015-06-08 15:52:48 -05:00
Dana Robinson
6c81df0a27 [svn-r27161] Added makefiles to tools/misc/vds to build the generators. 
Tested on: jam
 2015-06-08 04:56:49 -05:00
Dana Robinson
a6442037e4 [svn-r27160] Added VDS generator files. 
The Makefiles have not been updated so they don't compile yet.
 2015-06-08 04:10:50 -05:00
HDF Tester
02e9a43900 [svn-r27159] Snapshot version 1.9 release 221 2015-06-07 19:01:32 -05:00
Mohamad Chaarawi
4a2bee5cd8 [svn-r27158] missed rename if UNUSED to H5_ATTR_UNUSED in trace script. 2015-06-07 18:03:42 -05:00