Commit Graph

88 Commits

Author SHA1 Message Date
Quincey Koziol
fd79bc3c1a [svn-r26191] Description:
Track the min & max keys for a v2 B-tree, so it can more efficiently
determine if a key is present in the B-tree.

Tested on:
    Mac OSX/64 10.10.2 (amazon) w/parallel & serial
    Linux/32 2.6.x (jam) w/serial
2015-02-17 10:38:54 -05:00
Quincey Koziol
9c9ee2008c [svn-r21919] Description:
Refactor function name macros and simplify the FUNC_ENTER macros, to clear
away the cruft and prepare for further cleanups.

Tested on:
    Mac OSX/64 10.7.3 (amazon) w/debug, production & parallel
2012-02-08 22:13:27 -05:00
Quincey Koziol
e5575571d4 [svn-r19396] Description:
Bring back various modifications to the v2 B-trees that were introduced
in the revise_chunks branch but aren't dependent on any file format or API
changes.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, w/threadsafe, in production mode
        Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
        Mac OS X/32 10.6.4 (amazon) in debug mode
        Mac OS X/32 10.6.4 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
        Mac OS X/32 10.6.4 (amazon) w/parallel, in debug mode
2010-09-16 06:38:10 -05:00
Quincey Koziol
74c8b68aca [svn-r18702] Description:
Bring r18672 from metadata journaling "merging" branch to trunk:

	Mostly changes to move to only using one 'user data' parameter for
calls to H5AC_protect(), along with some minor reformatting code cleanups.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.6.3 (amazon) in debug mode
        Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
2010-05-05 08:39:56 -05:00
Quincey Koziol
f79ab3b26b [svn-r18634] Description:
Clean up compiler warnings.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.6.3 (amazon) in debug mode
        Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
2010-04-27 13:25:31 -05:00
Quincey Koziol
9eeffcb45e [svn-r18547] Description:
Tweak assert statement to attempt to pacify RSQ compiler.

Tested on:
    None, too minor - just eyeballed.
2010-04-12 08:58:39 -05:00
Quincey Koziol
63611c3aa2 [svn-r18494] Description:
Bring r18491 from metadata journaling "merging" branch to trunk:

	Extract data structure 'destroy' routines from metadata cache client
'destroy' callbacks.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.6.3 (amazon) in debug mode
        Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
2010-04-01 20:38:53 -05:00
Quincey Koziol
fd70b2afa8 [svn-r18197] Description:
Trim trailing whitespace from source code files with this command:

find . \( -name "*.[ch]" -or -name "*.cpp" -or -name "*.f90" \) -print |xargs -n 1 sed -i "" 's/[[:blank:]]*$//'

Tested on:
    None - eyeballed only
2010-01-29 23:29:13 -05:00
Quincey Koziol
71a9d50725 [svn-r17943] Description:
Finish refactoring v2 B-trees so that they can have client callback
context provided to the encode/decode callbacks.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.6.2 (amazon) in debug mode
        Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
2009-12-01 11:45:27 -05:00
Quincey Koziol
6d5d4ed1d1 [svn-r17893] Descrption:
Remove old shim H5B2 routines from refactoring, rename new routines to
old routine names and switch all users of the H5B2 interface back to the old
routine names now that the switch to using the more current open -> <operation>
-> pattern is used for all the H5B2 code.  This is the final change before 
adding a context to the H5B2 client encode/decode callbacks.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.6.2 (amazon) in debug mode
        Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
2009-11-14 22:38:58 -05:00
Quincey Koziol
e8f31a2479 [svn-r17848] Description:
Further refactoring v2 B-trees so that they can get context to the
encode/decode client callbacks:

	- Switch tests to using refactored routines

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.6.1 (amazon) in debug mode
        Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
2009-11-07 08:12:06 -05:00
Quincey Koziol
401f0c995f [svn-r17842] Description:
Further refactor v2 B-tree code toward being able to pass context info
down to encode/decode client callbacks:
	- Separate H5B2_create call to return H5B2_t structure
	- Make loading the v2 B-tree header pick up the client class from the
		ID stored in the file.  Simplify some internal API calls as a
		result.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.6.1 (amazon) in debug mode
        Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
2009-11-05 14:16:15 -05:00
Quincey Koziol
30a52dd1a2 [svn-r17838] Description:
Further refactoring of v2 B-tree code, moving toward being able to pass
a context information to a client's encode/decode callbacks.

	Also, clean up of other minor compiler warnings and code formatting
issues.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.6.1 (amazon) in debug mode
        Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
2009-11-05 08:45:35 -05:00
Quincey Koziol
56276c02cd [svn-r17785] Description:
Further refactor v2 B-tree code to bring it closer to modern data
structure designed in the library, mainly by introducing a H5B2_t type so that
the v2 B-tree could be held open, but not require the B-tree header to be
protected the whole time.  A few other minor tweaks as well.

	Also, remove unused 'dirty' flag from fractal heap header.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.6.1 (amazon) in debug mode
        Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
2009-10-29 08:58:52 -05:00
Quincey Koziol
ab3f3e0219 [svn-r17749] Description:
Refactor v2 B-tree code to bring it further in line with how the fractal
heap code works, to make forthcoming modificaions easier.  Also minor tweaks to
the fractal heap code to clean it up a bit more also.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
2009-10-27 14:18:45 -05:00
Quincey Koziol
f985e7d22f [svn-r17740] Description:
Refactor v2 B-tree code to take creation parameters to H5B2_create() as
a struct (instead of individual arguments), call the client's class "cls"
instead of "type" internally, and add client class name to client class struct.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.6.1 (amazon) in debug mode
        Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
2009-10-24 14:16:06 -05:00
Quincey Koziol
0753ed302a [svn-r17658] Description:
Rename 'H5B2_t' -> 'H5B2_hdr_t' and 'bt2' -> 'hdr' in preparation for
make v2 B-tree open/close routines library private (instead of static).

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.6.1 (amazon) in debug mode
        Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
2009-10-15 18:16:43 -05:00
Quincey Koziol
3dd3756ea1 [svn-r17657] Description:
Refactor the v2 B-tree code to use an open & close call internally, in
preparation for making those part of the library private APIs for dealing with
v2 B-trees.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.6.1 (amazon) in debug mode
        Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
2009-10-15 17:26:46 -05:00
Quincey Koziol
d38b38db5a [svn-r17649] Description:
Refactor v2 B-trees to pin the B-tree header in the cache instead of
using separate reference counted data structure.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.6.1 (amazon) in debug mode
        Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
2009-10-15 13:26:50 -05:00
Quincey Koziol
6283a0c823 [svn-r16632] Description:
Remove unnecessary 'udata' parameter from H5AC_set() and 'notify' callback
(introduced with checkin that added the 'notify' callback)

Tested on:
    FreeBSD/32 6.3 (duty) in debug mode
    FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
    Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
        in debug mode
    Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
        w/C++ & FORTRAN, in production mode
    Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
        w/szip filter, in production mode
    Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
        in production mode
    Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
    Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
    Mac OS X/32 10.5.6 (amazon) in debug mode
    Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe,
        in production mode
2009-03-31 09:58:02 -05:00
Quincey Koziol
0ac0358a80 [svn-r16630] Description:
Add 'notify' callback to metadata cache clients, so that they can be
aware when the cache has taken/will take certain actions.  Notifications are
urrently limited to when an entry has successfully entered the cache (via an
insertion or a load from the file) and when an entry is about to be evicted
from the cache.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.5.6 (amazon) in debug mode
        Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
2009-03-31 08:20:42 -05:00
Quincey Koziol
9f60f016ab [svn-r15800] Description:
Bring file free space branch changes through r15795 into trunk, which
includes a fair bit of code cleanup & rearrangement along with a couple of
bug fixes also.

Tested on:
        Mac OS X/32 10.5.5 (amazon) in debug mode
        Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
2008-10-06 23:17:35 -05:00
Quincey Koziol
97b6832023 [svn-r15211] Description:
Update the gcc flags for version 4.3

	Clean up warnings

Tested on:
        FreeBSD/32 6.2 (duty) in debug mode
        FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Mac OS X/32 10.5.3 (amazon) in debug mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2008-06-12 23:52:22 -05:00
Quincey Koziol
4be636f4f0 [svn-r13984] Description:
Various code cleanups and refactor recent changes for h5stat to fit
into the existing library data structures better.

Tested on:
	Mac OS X/32 10.4.10 (amazon)
	FreeBSD/32 6.2 (duty)
	Linux/32 2.6 (chicago)
	Linux/64 2.6 (chicago2)
2007-07-17 14:35:09 -05:00
Vailin Choi
d44b27ddcc [svn-r13978] purpose:
New feature.

Description:
Added routines to report on the amount of storage for:
1) 1.6 btree and heap storage info for groups
2) 1.8 btree, fractal heap storage info for groups, attributes and SOHM table
3) btree storage for chunked datasets
4) 1.8 superblock extension size.

Platform tested:
h5committested.
2007-07-13 16:12:25 -05:00
Quincey Koziol
0fcfcf0fa4 [svn-r13773] Description:
Reduce compiler warnings w/gcc 4.2

Tested on:
	FreeBSD/32 6.2 (duty) w/gcc 4.2
2007-05-20 00:48:09 -05:00
Quincey Koziol
3c394783e7 [svn-r13771] Description:
Fix some more unitialized variables that were flagged by valgrind.

Tested on:
	FreeBSD/32 6.2 (duty) w/valgrind
2007-05-19 00:37:00 -05:00
Quincey Koziol
aa96180fa9 [svn-r13690] Description:
Fully enable readers/writer locking in metadata cache and correct errors
in cache clients which were modifying a cache entry while only holding a
read lock on it.

Tested on:
    Mac OS X/32 10.4.9 (amazon)
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
    FreeBSD/32 6.2 (duty)
    FreeBSD/64 6.2 (liberty)
2007-04-19 13:43:10 -05:00
Albert Cheng
ed7d456e51 [svn-r13253] Updated all C and C++ style source code files with the THG copyright notice.
Tested platform:
Kagiso only since it is only a comment block change.  If it works in one
machine, it should work in all, I hope.  Still need to check the parallel
build on copper.
2007-02-07 09:56:24 -05:00
Quincey Koziol
2f665b89ce [svn-r13047] Description:
Add "attribute exists" internal routine to make verifying that an attribute
with the same name doesn't already exist easier.

    Tweak "trace" script to produce more whitespace in H5TRACE macros, in order
to make them easier to read.

    Minor other whitespace cleanups

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-12-11 20:49:59 -05:00
Quincey Koziol
7b368f006e [svn-r13028] Description:
Add first pass of "dense" attribute storage to objects.  Lots of parts of
this are stubbed out, but all the tests are passing and I'll work on the corner
cases soon.

    Eliminated several unused parameters from object header message callback
routines.

    Other, miscellaneous code cleanups, etc. (and probably some things I've
forgotten about... :-)

Tested on:
    FreeBSD/32 4.11 (sleipnir)
    Linux/32 2.4 (heping)
    AIX/32 5.? (copper)
2006-12-06 17:19:52 -05:00
Quincey Koziol
c76724db39 [svn-r13019] Description:
Further simplifications and cleanups to object header message code.

    Also, some changes to the "iterate" routines, in order to not override
the return value from the iterator callback routine.

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-12-04 12:09:17 -05:00
Quincey Koziol
002fe8b35d [svn-r12914] Description:
Checkpoint partially working v2 B-tree delete by index code (ifdef'ed out)
for further work.

Tested on:
    Linux/32 2.6 (chicago)
2006-11-14 15:33:50 -05:00
Quincey Koziol
bc0b7c478f [svn-r12873] Decription:
Add support for reverse index lookup to v2 B-trees (needed for reverse
index lookup of links in groups)

Tested on:
    Linux/64 2.6 (chicago2)
2006-11-07 10:25:06 -05:00
Quincey Koziol
23b3a6a91b [svn-r12644] Description:
Improve density of the B-tree further.  For greater depths of B-trees,
the gains are over 100%...

    Also, don't split internal nodes with 3->4 splits, use a 1->2 split
instead, so that the density of the nodes around a split is maximized.

Tested:
    Mac OS X/PPC 10.4 (amazon)
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-09-05 15:53:16 -05:00
Quincey Koziol
d1e7ac416e [svn-r12638] Description:
Split edge nodes in the tree with a 1->2 node split, instead of a 2->3 node
split, which creates a more dense tree when a pattern of record insertions
occurs (because it leaves behind full nodes instead of 2/3 full nodes).

Tested:
    FreeBSD/32 4.11 (sleipnir)
    Linux/64 2.4 (mir)
    Linux/32 2.4 (heping)
    Solaris/64 2.9 (shanti)
2006-09-04 11:37:41 -05:00
Quincey Koziol
f49a8d1afc [svn-r12631] Description:
Refactor the file storage of "twig" nodes in the B-tree to allow them to
store more records, increasing the average density of the B-tree 30-40%.

    Increase # of records in "insert lots" regression test to still create
B-tree of depth 4

    Update h5debug to interpret difference of 'branch' and 'twig' internal
nodes in B-tree correctly.

Tested on:
    FreeBSD/32 4.11 (sleipnir)
    Linux/32 2.4 (heping)
    Linux/64 2.4 (mir)
    Solaris/64 2.9 (shanti)
2006-08-26 02:26:07 -05:00
Quincey Koziol
9c30e7bba1 [svn-r12619] Description:
Fix off-by-one error in computing the size of metadata prefixes for v2
B-tree internal & leaf nodes.

    General code cleanup and reformating.

Tested On:
    Mac OS X.4/PPC (amazon)
    Too minor to require h5committest
2006-08-23 10:26:25 -05:00
Quincey Koziol
f06e8744a5 [svn-r12561] Description:
Update code formatting a little and refactor to add a better mechanism
for performing callbacks when removing records from the B-tree or deleting
entire B-tree.

Testing:
    FreeBSD 4.11 (sleipnir)
    Linux/64 2.4 (mir)
    Linux/32 2.4 (heping)
    Mac OS 10.4 (amazon)
2006-08-09 22:42:51 -05:00
Quincey Koziol
49ab3665aa [svn-r12093] Purpose:
Code checkpoint

Description:
    Checkpoint fractal heap changes - mostly internal changes to better
handle more direct blocks from root indirect block.

Platforms tested:
    FreeBSD 4.11 (sleipnir)
    Linux 2.4 (chicago)
    Mac OS X (amazon)
2006-03-15 15:16:04 -05:00
Quincey Koziol
658bf4a8fb [svn-r11968] Purpose:
Incrementtal checkin

Description:
    Revise & update v2 B-tree code to separate the internal package-specific
routines from the library-callable "private" routines.

    Similar updates for the fractal heap code.

Platforms tested:
    FreeBSD 4.11 (sleipnir)
    Mac OSX (amazon)
2006-02-27 09:52:21 -05:00
Quincey Koziol
3e8948df52 [svn-r11966] Purpose:
Code cleanup

Description:
    Style fixes for consistency & other minor cleanups

Platforms tested:
    FreeBSD 4.11 (sleipnir)
    Mac OSX (amazon)
    Linux 2.4
2006-02-26 22:30:22 -05:00
Quincey Koziol
a1708eb023 [svn-r11712] Purpose:
New feature

Description:
    Check in baseline for compact group revisions, which radically revises the
source code for managing groups and object headers.

WARNING!!!!  WARNING!!!!  WARNING!!!!  WARNING!!!!  WARNING!!!!  WARNING!!!!
WARNING!!!!  WARNING!!!!  WARNING!!!!  WARNING!!!!  WARNING!!!!  WARNING!!!!

    This initiates the "unstable" phase of the 1.7.x branch, leading up
to the 1.8.0 release.  Please test this code, but do _NOT_ keep files created
with it - the format will change again before the release and you will not
be able to read your old files!!!

WARNING!!!!  WARNING!!!!  WARNING!!!!  WARNING!!!!  WARNING!!!!  WARNING!!!!
WARNING!!!!  WARNING!!!!  WARNING!!!!  WARNING!!!!  WARNING!!!!  WARNING!!!!


Solution:
    There's too many changes to really describe them all, but some of them
include:
    - Stop abusing the H5G_entry_t structure and split it into two separate
        structures for non-symbol table node use within the library: H5O_loc_t
        for object locations in a file and H5G_name_t to store the path to
        an opened object.  H5G_entry_t is now only used for storing symbol
        table entries on disk.

    - Retire H5G_namei() in favor of a more general mechanism for traversing
        group paths and issuing callbacks on objects located.  This gets us out
        of the business of hacking H5G_namei() for new features, generally.

    - Revised H5O* routines to take a H5O_loc_t instead of H5G_entry_t

    - Lots more...

Platforms tested:
    h5committested and maybe another dozen configurations.... :-)
2005-11-14 21:55:39 -05:00
Quincey Koziol
0891038562 [svn-r11686] Purpose:
New feature

Description:
    Add in baseline "object copy" code from Peter [in the form of a new API
routine: H5Gcopy()].  There's still some work to do (like handling variable-
length datatypes and possibly support for references) and it hasn't been tested
on mounted files yet, but the core functionality is there and working
correctly.

    I've also got a set of patches to update the 1.6 branch with tweaks to
keep the branches mostly in sync, but Elena will kill me if I import them
before the 1.6.5 release is out... :-)

Platforms tested:
    FreeBSD 4.11 (sleipnir)
    h5committested
2005-11-06 22:13:53 -05:00
Quincey Koziol
6b45f5172c [svn-r11245] Purpose:
Code cleanup

Description:
    Trim trailing whitespace, which is making 'diff'ing the two branches
difficult.

Solution:
    Ran this script in each directory:

foreach f (*.[ch] *.cpp)
    sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f
end


Platforms tested:
    FreeBSD 4.11 (sleipnir)
    Too minor to require h5committest
2005-08-13 15:53:35 -05:00
Quincey Koziol
ddf9e4a4af [svn-r11014] Purpose:
Code cleanup

Description:
    Refactor metadata cache to merge "dirtied" flag in with other flags for
H5AC_unprotect and H5C_unprotect.

Platforms tested:
    FreeBSD 4.11 (sleipnir)
    h5committest
2005-07-02 11:36:15 -05:00
John Mainzer
7f8e346026 [svn-r10978] Purpose:
Interim checkin of code changes moving management of the is_dirty flag
into the cache code.


Description:

   Prior to this checkin, management of the is_dirty flag was handled
above the level of the metadata cache.  This can no longer be allowed,
as it introduces a race condition in the proposed fix for a cache
coherency bug in PHDF5.


Solution:

   Move management fo the is_dirty flag to the cache code proper.
Entries are now marked as dirty via a flag on the unprotect call.


Platforms tested:

h5committested


Misc. update:
2005-06-24 01:30:29 -05:00
Quincey Koziol
98244eb5dd [svn-r10705] Purpose:
Code cleanup

Description:
    Clean up a few compiler warnings of various sorts...

Platforms tested:
    FreeBSD 4.11 (sleipnir)
    Too minor to require h5committest
2005-04-30 16:05:34 -05:00
Quincey Koziol
af6276f654 [svn-r10628] Purpose:
Code cleanup

Description:
    Clean up various warnings reported by the Windows team.

Platforms tested:
    FreeBSD 4.11 (sleipnir)
    Too minor to require h5committest
2005-04-18 16:21:35 -05:00
Quincey Koziol
785b356d40 [svn-r10503] Purpose:
Fix typo

Description:
    Fix typo in comment.

Platforms tested:
    FreeBSD 4.11 (sleipnir)
    Too minor to require h5committest
2005-03-29 16:22:20 -05:00