2
0
mirror of https://github.com/HDFGroup/hdf5.git synced 2024-12-21 07:51:46 +08:00
Commit Graph

14266 Commits

Author SHA1 Message Date
Dana Robinson
14664baf4f [svn-r26227] Removed bin/compile, which is a generated file.
Removed bin/mkinstalldirs which is both generated and obsolete.

Part of: HDFFV-9067

Tested on: 64-bit linux VM
2015-02-19 02:49:32 -05:00
Dana Robinson
265782d3eb [svn-r26226] Fixed the --with-pthread option so that it correctly handles 'yes' and
'no', which was broken after other work in this area.

Part of: HDFFV-9087

Tested on: 64-bit linux VM
2015-02-19 02:44:55 -05:00
Dana Robinson
a7f70203b4 [svn-r26225] Removes broken open() call work-around that was specific to the now
unsupported Code Warrior compiler. Also removes the H5_NO_SHARED_WRITING
symbol from the pubconf file.

Fixes: HDFFV-9080

Tested on: jam only, after bin/reconfigure
           (all platforms should see no source changes)
2015-02-19 00:24:09 -05:00
Mohamad Chaarawi
32c030ad2b [svn-r26223] add another H5close before finalize so with-mpe does not fail. 2015-02-18 16:37:25 -05:00
Mohamad Chaarawi
79d94c7bb7 [svn-r26222] call H5close before MPI_Finalize() and close some objects that could be potentially left open. 2015-02-18 16:17:15 -05:00
Dana Robinson
a2b08b6e27 [svn-r26221] Removed VMS files. VMS is no longer a supported platform. 2015-02-18 16:15:35 -05:00
Dana Robinson
63d38ca75a [svn-r26219] Merge r26029 from autotools_rework feature branch.
Adds a comment to configure.ac indicating that Cygwin still has
problems with srcdir and time.

Fixes: HDFFV-9082

Tested on: jam (comment only change) w/ bin/reconfigure
2015-02-18 16:06:47 -05:00
Scot Breitenfeld
93379cf58f [svn-r26217] Added H5T_PROVISIONAL_mp_H5TENUM_INSERT_F 2015-02-18 15:03:45 -05:00
Dana Robinson
c3385d9010 [svn-r26216] Removed inappropriate TEXT() macro from the plugin name and changed a few Win32 API calls to use the <function>A version, which forces char behavior (vs. wchar_t) when UNICODE is defined. This only affects Windows.
Fixes HDFFV-8927

Tested on 64-bit Windows 7 with Visual Studio 2012 and CMake 3.2 with UNICODE/_UNICODE both defined and undefined.
2015-02-18 14:41:43 -05:00
Scot Breitenfeld
27a385d557 [svn-r26214] Fix for HDFFV-8908:
h5tenum_insert_f does not work with default 8 byte integers (xlf compiler)
2015-02-18 13:51:13 -05:00
Quincey Koziol
41aeac4504 [svn-r26213] Description:
Minor code cleanups, to align with revise_chunks branch.

Tested on:
    Mac OSX/64 10.10.2 (amazon) w/serial & parallel
    Linux/32 2.6.x (jam) w/serial
2015-02-18 13:25:05 -05:00
Scot Breitenfeld
3a303d3dd3 [svn-r26211] revert ci 26204 2015-02-18 12:45:42 -05:00
Scot Breitenfeld
f1ffd2202b [svn-r26210] Removed debugging statement and typos. 2015-02-18 12:30:31 -05:00
Allen Byrne
73bb11dda3 [svn-r26208] Update cmake minimums 2015-02-18 11:56:22 -05:00
Scot Breitenfeld
69d4bda97c [svn-r26206] Reverting change r26204 2015-02-18 11:45:03 -05:00
Scot Breitenfeld
a75fd4c960 [svn-r26205] Fix for HDFFV-8908:
h5tenum_insert_f does not work with default 8 byte integers (xlf compiler)
2015-02-18 11:42:47 -05:00
Mohamad Chaarawi
546899dcd6 [svn-r26203] increase string size to 128 for MPE function event name. 2015-02-18 10:53:08 -05:00
Dana Robinson
3db1c5f635 [svn-r26200] Fixed mixed tabs and spaces before making changes.
No code changes.
2015-02-17 16:30:33 -05:00
Quincey Koziol
85504f5376 [svn-r26195] Description:
Switch from enum H5D_CHUNK_BTREE to H5D_CHUNK_IDX_BTREE, along with a couple
of minor whitespace touchups.

Tested on:
    Mac OSX/64 10.10.2 (amazon) w/serial & parallel
    Linux/32 2.6.x (jam) w/serial
2015-02-17 15:11:39 -05:00
Quincey Koziol
595b01658e [svn-r26193] Description:
Fix locking error when splitting root node of v1 B-tree, and simplify
the iteration over entries in a v1 B-tree (avoiding using the sibling pointer
also).

Tested on:
    Mac OSX/64 10.10.2 (amazon) w/serial & parallel
    Linux/32 2.6.x (jam) w/serial
2015-02-17 14:30:27 -05:00
Quincey Koziol
fd79bc3c1a [svn-r26191] Description:
Track the min & max keys for a v2 B-tree, so it can more efficiently
determine if a key is present in the B-tree.

Tested on:
    Mac OSX/64 10.10.2 (amazon) w/parallel & serial
    Linux/32 2.6.x (jam) w/serial
2015-02-17 10:38:54 -05:00
Scot Breitenfeld
b28b5fade9 [svn-r26188] Merged autotools fixes into the trunk:
HDFFV-9089, HDFFV-9091, HDFFV-9092, HDFFV-9094, HDFFV-9095
2015-02-16 12:17:49 -05:00
Mohamad Chaarawi
74fbb9e327 [svn-r26180] merge configure fixes for HDFFV-9068,9069,9096,9097,9135 from autotools_rework branch:
- Remove Infering parallel compilers (C and Fortran) from configure.ac
- Remove restriction to build shared with parallel
- Cleanup parallel sections in configure.ac
- remove large file support checks
- MPE fixes.

tested with h5committest.
2015-02-16 11:17:03 -05:00
HDF Tester
9a376e4ee9 [svn-r26177] Snapshot version 1.9 release 214 2015-02-15 06:13:34 -05:00
Albert Cheng
d0c224ae18 [svn-r26173] HDF5-9117: if testing for proper working 'tr' command is needed.
Long time ago, the tr command in some platform does not work properly and this test was added
to detect broken tr and abort the configure process.
We are not aware of such broken tr command in current systems and decided to retire this test.

The setup of ${TR} is still needed as it is used to process DEBUG_PKG.

Tested: h5committested plus using "./configure --enable-debug=all" in jam.
2015-02-13 19:24:50 -05:00
Scot Breitenfeld
7fcba33763 [svn-r26172] Fix for: HDFFV-8685 -- Have one include file to use for HL libraries
added hdf5.h to hdf5_hl.h
2015-02-13 16:32:44 -05:00
Mohamad Chaarawi
d38f3d888d [svn-r26171] fix MPE setup. 2015-02-13 16:21:00 -05:00
Scot Breitenfeld
999440cbf8 [svn-r26170] Fix for HDFFV-8559
Correction of mistyped variable and removed implicit typing for interfaces.
2015-02-13 15:57:52 -05:00
Quincey Koziol
8b98b9ee92 [svn-r26169] Description:
Remove generated header file from repository, and add section to
autogen.sh that generates it.

Tested on:
    Mac OSX/64 10.10.2 (amazon)
2015-02-13 14:22:21 -05:00
Dana Robinson
e9144293c1 [svn-r26168] Added --force-missing to automake. It has to be used WITH --add-missing;
it's not a replacement.

Part of HDFFV-9114

Tested on jam with the -p option
2015-02-13 11:23:08 -05:00
Dana Robinson
df7c8f6bc9 [svn-r26166] Changed the automake --force-missing option back to --add-missing.
Part of HDFFV-9114

Tested on: Cygwin
2015-02-13 11:10:35 -05:00
Albert Cheng
6b01332709 [svn-r26165] HDF5-9117: if testing for proper working 'tr' command is needed.
Long time ago, the tr command in some platform does not work properly and this test was added
to detect broken tr and abort the configure process.
We are not aware of such broken tr command in current systems and decided to retire this test.

The setup of ${TR} is still needed as it is used to process DEBUG_PKG.

Tested: in jam using "./configure" and "./configure --enable-debug=all".
2015-02-13 10:15:49 -05:00
Dana Robinson
0829df23e5 [svn-r26164] Updated autogen.sh to use the --force option on all tools
when available. Also added the --copy option to to libtoolize
so files are copied and not symlinked.

Part of HDFFV-9114

Tested on jam.

- autogen.sh -p
- configure (out-of-source)
- Modified configure.ac
- Re-run autogen.sh -p
- Re-run configure
- make

Without the fix, make fails when it notes out-of-date autotools
files and re-runs the tools, picking up jam's elderly versions.
With the fix, make succeeds.
2015-02-13 04:22:31 -05:00
Allen Byrne
d1897cb038 [svn-r26162] Update versions 2015-02-12 16:56:21 -05:00
Allen Byrne
ab75986b8c [svn-r26161] Fix cmake case.
Turn on F2003 by default.
Set source properties in fortran cmake files.
2015-02-12 16:52:48 -05:00
Neil Fortner
1b78408184 [svn-r26149] Fix potential memory error reported by valgrind in
H5D__link_chunk_collective_io.  This would occur when performing collective I/O
on a dataset with only 1 chunk, and a participating process had nothing to read
or write.

Tested: jam, koala, ostrich (h5committest)
2015-02-09 11:31:28 -05:00
HDF Tester
f4a60fc34c [svn-r26146] Snapshot version 1.9 release 213 2015-02-08 06:05:07 -05:00
Dana Robinson
99c4ec387c [svn-r26145] Removed bin/reconfigure.
The autogen.sh script seems to work in enough places
and for enough people to warrant removing bin/reconfigure.
2015-02-07 02:05:34 -05:00
Dana Robinson
dcd8c9f487 [svn-r26144] Removed bin/genltanalyze from the MANIFEST since that file has
been permanently deleted. I've not removed all the generated
files from the MANIFEST, though, since I'm waiting on a decision
as to whether we leave those in or not.

Tested on: bin/chkmanifest after running autogen.sh
2015-02-07 01:34:24 -05:00
Dana Robinson
7590687d4b [svn-r26143] Merged r26096-26142 from trunk.
Tested on: jam w/ Fortran and C++
2015-02-07 01:14:12 -05:00
Dana Robinson
a7def93aa3 [svn-r26142] Updated autogen.sh so it works on OS-X. Note that this does require
installing the autotools via a package manager like Homebrew since
they are not installed with XCode.

Part of: HDFFV-9114

Tested on: OS-X 10.10.2 (Yosemite) with XCode 6.1.1
2015-02-06 23:24:31 -05:00
Dana Robinson
d63cdb36cf [svn-r26136] Updated autogen.sh to run flex and bison, replacing the (incomplete)
bin/genltanalyze script, which has been deleted. Also removed the
generated hl/src/H5LTparse.c/h and H5LTanalyze.c files.

Part of: HDFFV-9120

Tested on: Local Ubuntu VM
2015-02-05 21:39:36 -05:00
Dana Robinson
eea4f45172 [svn-r26135] Updated autogen.sh to always run API-oriented scripts. Removed
the -s option from autogen.sh. Removed several generated H5E
files from version control as well as H5version.h since these
will always be regenerated.

Part of: HDFFV-9120

Tested on: Local Ubuntu VM
2015-02-05 20:02:30 -05:00
Scot Breitenfeld
167619a75d [svn-r26132] reverted change 26177
svn merge -c -26117 .

Shared Fortran libraries don't work on Mac, the check for building shared on Mac needs to stay in.
2015-02-05 14:36:51 -05:00
Dana Robinson
e8013712b2 [svn-r26130] Updated autogen.sh to try glibtoolize if libtoolize is
not found. Allows reconfiguration on OS-X.

Part of: HDFFV-9120

Untested since we have no suitable OS-X machines
2015-02-05 13:31:21 -05:00
Dana Robinson
ba739af91f [svn-r26129] Removed some additional generated files that were triggering autotools
re-builds, which would fail due to incorrect autotools versions.

Part of: HDFFV-9120

Tested on: jam
2015-02-05 11:54:52 -05:00
Dana Robinson
01c7b17dac [svn-r26128] - Removed libtool generated/copied files.
- Modified autogen.sh to run libtoolize.
  NOTE: OS-X often uses glibtoolize. This will be fixed soon.

- Addational helpful output added to autogen.sh.

Part of HDFFV-9120

Tested on: 64-bit Linux VM
2015-02-05 11:21:21 -05:00
Scot Breitenfeld
46d39603ad [svn-r26127] Fixed typo. 2015-02-05 09:59:15 -05:00
Scot Breitenfeld
06d1971f41 [svn-r26124] Fixed issue with deprecated symbols for H5G constants 2015-02-04 09:38:16 -05:00
Scot Breitenfeld
5060fb1050 [svn-r26122] Fix for HDFFV-9040 h5rget_object_type_f returns different types than indicated by API
Slight change of global variable definitions from C.

Tested: jam.
2015-02-03 13:52:27 -05:00