Commit Graph

16845 Commits

Author SHA1 Message Date
Allen Byrne
539c17b2f4 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit 'bf570b1a7ca3b9cbd4a59f0933a19ce1bcc99103': (71 commits)
  Amend tests to explicitly use H5Dcreate2 and H5Dopen2
  Revert malloc's back to using hard-coded type for sizeof
  Minor comment refactoring
  Update documentation
  Finish up Parallel Compression test scaling work
  Partial update for scaling parallel filters tests
  Modify t_dset.c in lieu of Parallel Compression changes
  Updated H5C__flush_single_entry() in H5C.c to correct duplicate metadata write bug observed in 1.10.1.
  Amend MANIFEST
  Add test for write parallel; read serial case
  Fix uninitialized array issue in test
  Test updates
  Fix bug where incorrect amount of data was being read from the file
  Add data verification for first half of tests
  Start adding data verification
  Switch tests over to use testing macros
  Updates to parallel filters tests
  Move test files to testpar directory
  Add test file to build process
  Suggested changes from code review
  ...
2017-09-05 13:24:22 -05:00
Jordan Henderson
bf570b1a7c Merge pull request #592 in HDFFV/hdf5 from ~JHENDERSON/hdf5:develop to develop
* commit 'b95986e50d1d1043952b00cad6595e8ecbff414f': (71 commits)
  Amend tests to explicitly use H5Dcreate2 and H5Dopen2
  Revert malloc's back to using hard-coded type for sizeof
  Minor comment refactoring
  Update documentation
  Finish up Parallel Compression test scaling work
  Partial update for scaling parallel filters tests
  Modify t_dset.c in lieu of Parallel Compression changes
  Updated H5C__flush_single_entry() in H5C.c to correct duplicate metadata write bug observed in 1.10.1.
  Amend MANIFEST
  Add test for write parallel; read serial case
  Fix uninitialized array issue in test
  Test updates
  Fix bug where incorrect amount of data was being read from the file
  Add data verification for first half of tests
  Start adding data verification
  Switch tests over to use testing macros
  Updates to parallel filters tests
  Move test files to testpar directory
  Add test file to build process
  Suggested changes from code review
  ...
2017-09-05 08:38:47 -05:00
Jordan Henderson
b95986e50d Merge branch 'develop' of ssh://bitbucket.hdfgroup.org:7999/~jhenderson/hdf5.git into develop 2017-09-01 12:47:12 -05:00
Jordan Henderson
487e77b19e Amend tests to explicitly use H5Dcreate2 and H5Dopen2 2017-09-01 12:45:48 -05:00
Jordan Henderson
fa21f6af4d Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit 'abcf30f232914c1ec9b8c5f2a3bb3a621af7bfe4':
  HDFFV-10284 Add VS2017 support
  Add commentary around calling H5Screate_simple with a single element
  Miscellaneous improvements (cont.) Description:     Put back H5Location::getNumObjs and marked as deprecated in favor of     Group::getNumObjs. Platforms tested:     Linux/32 2.6 (jam)     Darwin (osx1010test)
  Miscellaneous improvements Description:     Moved H5Location::getNumObjs to Group::getNumObjs (i.e., H5Gget_info)     Switched reinterpret_cast to static_cast in H5Object::iterateAttrs     Miscellaneous cleanup Platforms tested:     Linux/32 2.6 (jam)     Linux/64 (platypus)     Darwin (osx1010test)
  HDFFV-10282 refactor out assert calls in tools
  Fix the t_bigio test so that it runs on 32bit machines
2017-09-01 09:24:39 -05:00
Jordan Henderson
17029af344 Revert malloc's back to using hard-coded type for sizeof 2017-09-01 08:58:37 -05:00
Jordan Henderson
ce977db07e Minor comment refactoring 2017-09-01 08:38:17 -05:00
Allen Byrne
89f65fc97e HDFFV-9774 Add enable-error-stack argument to h5diff 2017-08-31 15:58:37 -05:00
Allen Byrne
abcf30f232 Merge pull request #648 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '073f52424766cc4a8ac9d56966cb58c054ce3801':
  HDFFV-10284 Add VS2017 support
2017-08-31 15:18:28 -05:00
Jordan Henderson
2959faa575 Update documentation 2017-08-31 15:05:13 -05:00
Allen Byrne
073f524247 HDFFV-10284 Add VS2017 support 2017-08-31 13:37:50 -05:00
Allen Byrne
f5275af71a Merge pull request #644 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '61bdee1ff77a5db47ce8a88ce7e3c83e58123236':
  HDFFV-10282 refactor out assert calls in tools
2017-08-31 13:31:42 -05:00
Allen Byrne
61bdee1ff7 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '289007567e6ab5e0893af787b1870f27f10644c7':
  Add commentary around calling H5Screate_simple with a single element
  Miscellaneous improvements (cont.) Description:     Put back H5Location::getNumObjs and marked as deprecated in favor of     Group::getNumObjs. Platforms tested:     Linux/32 2.6 (jam)     Darwin (osx1010test)
  Miscellaneous improvements Description:     Moved H5Location::getNumObjs to Group::getNumObjs (i.e., H5Gget_info)     Switched reinterpret_cast to static_cast in H5Object::iterateAttrs     Miscellaneous cleanup Platforms tested:     Linux/32 2.6 (jam)     Linux/64 (platypus)     Darwin (osx1010test)
  Fix for daily test failure Fix for the compilation error from the PGI compiler.
  Modifications based on comments from pull request review (1) Remove unnecessary asserts (2) Add code to insert bad offset values to the test file in gen_bad_offset.c
  Fix for HDFFV-10216 segfault in H5G_node_cmp3 with corrupt h5 file Fix H5HL_offset_into() to return error when offset exceeds heap data block size. Also fix other places that call this routine to detect error return.
  Fix the t_bigio test so that it runs on 32bit machines
2017-08-29 12:45:03 -05:00
Jordan Henderson
b5b1dd0827 Finish up Parallel Compression test scaling work 2017-08-29 11:41:52 -05:00
Barbara Jones
289007567e Merge pull request #642 in HDFFV/hdf5 from ~BMRIBLER/hdf5_bmr_cpp3:develop to develop
* commit '883a235d5ca81770228c5cb5f9d162afda0b411f':
  Miscellaneous improvements (cont.) Description:     Put back H5Location::getNumObjs and marked as deprecated in favor of     Group::getNumObjs. Platforms tested:     Linux/32 2.6 (jam)     Darwin (osx1010test)
  Miscellaneous improvements Description:     Moved H5Location::getNumObjs to Group::getNumObjs (i.e., H5Gget_info)     Switched reinterpret_cast to static_cast in H5Object::iterateAttrs     Miscellaneous cleanup Platforms tested:     Linux/32 2.6 (jam)     Linux/64 (platypus)     Darwin (osx1010test)
2017-08-29 10:09:28 -05:00
Richard Warren
dfdf09f2a1 Merge pull request #635 in HDFFV/hdf5 from GreaterThan-2GB-MPIO to develop
Added some commentary on the fact that 32 bit compilers appear to require actual array arguments to call H5Screate_simple rather than a pointer to a single size_t element.

* commit '22baab211d912f1012057b3a7ae217abd2a44a38':
  Add commentary around calling H5Screate_simple with a single element
  Fix the t_bigio test so that it runs on 32bit machines
2017-08-28 19:30:23 -05:00
Richard Warren
22baab211d Add commentary around calling H5Screate_simple with a single element 2017-08-28 20:05:52 -04:00
Jordan Henderson
7f8a8a6878 Partial update for scaling parallel filters tests 2017-08-28 15:12:58 -05:00
Binh-Minh Ribler
883a235d5c Miscellaneous improvements (cont.)
Description:
    Put back H5Location::getNumObjs and marked as deprecated in favor of
    Group::getNumObjs.
Platforms tested:
    Linux/32 2.6 (jam)
    Darwin (osx1010test)
2017-08-25 12:07:04 -05:00
Jordan Henderson
e04817b5aa Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '593e4038b3ab474a47e468bb3478d4ae3a6820e6':
  Fix for daily test failure Fix for the compilation error from the PGI compiler.
  Modifications based on comments from pull request review (1) Remove unnecessary asserts (2) Add code to insert bad offset values to the test file in gen_bad_offset.c
  HDFFV-10188 force non-native type description
  HDFFV-10188 emu insists on printing non-native description
  Fix for HDFFV-10216 segfault in H5G_node_cmp3 with corrupt h5 file Fix H5HL_offset_into() to return error when offset exceeds heap data block size. Also fix other places that call this routine to detect error return.
  HDFFV-10188 fix typo
  HDFFV-10188 add missing copy commands
  HDFFV-10188 Add tests and files
  HDFFV-10188 enable null space test
  HDFFV-10188 add release note
  HDFFV-10188 - Check for empty string first
  HDFFV-10188 error on NULL dataspace
2017-08-24 14:37:13 -05:00
Binh-Minh Ribler
f4c4ab678b Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_bmr_cpp3 into develop 2017-08-24 13:47:44 -05:00
Binh-Minh Ribler
0e44181bbb Miscellaneous improvements
Description:
    Moved H5Location::getNumObjs to Group::getNumObjs (i.e., H5Gget_info)
    Switched reinterpret_cast to static_cast in H5Object::iterateAttrs
    Miscellaneous cleanup
Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
2017-08-24 13:46:39 -05:00
Vailin Choi
593e4038b3 Merge pull request #641 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to develop
* commit '268f01fd477e0474fa5727a47abef214a5e4293b':
  Fix for daily test failure Fix for the compilation error from the PGI compiler.
2017-08-24 11:46:53 -05:00
Vailin Choi
268f01fd47 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~vchoi/my_hdf5_fork into develop 2017-08-24 11:45:01 -05:00
Vailin Choi
38b4e97692 Fix for daily test failure
Fix for the compilation error from the PGI compiler.
2017-08-24 11:42:35 -05:00
Vailin Choi
f3b72e1bde Merge pull request #637 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to develop
* commit '1ef8577a4aaaa4120a819ff36747fdca99abdc26':
  Modifications based on comments from pull request review (1) Remove unnecessary asserts (2) Add code to insert bad offset values to the test file in gen_bad_offset.c
  Fix for HDFFV-10216 segfault in H5G_node_cmp3 with corrupt h5 file Fix H5HL_offset_into() to return error when offset exceeds heap data block size. Also fix other places that call this routine to detect error return.
2017-08-23 16:35:19 -05:00
Vailin Choi
1ef8577a4a Modifications based on comments from pull request review
(1) Remove unnecessary asserts
(2) Add code to insert bad offset values to the test file in gen_bad_offset.c
2017-08-23 16:23:09 -05:00
Allen Byrne
b82ba32275 HDFFV-10282 refactor out assert calls in tools 2017-08-23 16:12:40 -05:00
Allen Byrne
1b647b18fe Merge pull request #639 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '678c3ae1535b9b3b9faa53bc48250f1635778dd7':
  HDFFV-10188 force non-native type description
  HDFFV-10188 emu insists on printing non-native description
2017-08-23 11:19:05 -05:00
Allen Byrne
678c3ae153 HDFFV-10188 force non-native type description 2017-08-23 10:18:08 -05:00
Allen Byrne
d200cd31a7 HDFFV-10188 emu insists on printing non-native description 2017-08-23 10:16:49 -05:00
Allen Byrne
b901326501 Merge pull request #636 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '3dcb1887085678f08c02b64f1a04a77cd607cc4c':
  HDFFV-10188 fix typo
  HDFFV-10188 add missing copy commands
  HDFFV-10188 Add tests and files
  HDFFV-10188 enable null space test
  HDFFV-10188 add release note
  HDFFV-10188 - Check for empty string first
  HDFFV-10188 error on NULL dataspace
2017-08-22 15:29:35 -05:00
Vailin Choi
b07eb6efd0 Fix for HDFFV-10216 segfault in H5G_node_cmp3 with corrupt h5 file
Fix H5HL_offset_into() to return error when offset exceeds heap data block size.
Also fix other places that call this routine to detect error return.
2017-08-22 01:36:20 -05:00
Allen Byrne
3dcb188708 HDFFV-10188 fix typo 2017-08-21 13:06:57 -05:00
Allen Byrne
7acbb154d1 HDFFV-10188 add missing copy commands 2017-08-21 12:26:48 -05:00
Allen Byrne
138c3ee366 HDFFV-10188 Add tests and files 2017-08-21 11:56:31 -05:00
Allen Byrne
f695491f05 HDFFV-10188 enable null space test 2017-08-21 10:35:49 -05:00
Allen Byrne
6e8b9dcfd4 HDFFV-10188 add release note 2017-08-21 09:33:54 -05:00
Allen Byrne
164eee91cf HDFFV-10188 - Check for empty string first 2017-08-16 15:01:29 -05:00
Jordan Henderson
1cf7c7ecc9 Modify t_dset.c in lieu of Parallel Compression changes 2017-08-15 16:36:26 -05:00
mainzer
85699e41c2 Updated H5C__flush_single_entry() in H5C.c to correct
duplicate metadata write bug observed in 1.10.1.

Tested parallel/production on jelly
       parallel/debug & parallel/production on charis (in develop branch)
2017-08-15 15:54:34 -05:00
Richard Warren
f84af6ecc6 Fix the t_bigio test so that it runs on 32bit machines 2017-08-15 09:17:04 -04:00
Jordan Henderson
af3474f05e Amend MANIFEST 2017-08-11 14:32:00 -05:00
Jordan Henderson
c34ee0b2a5 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into develop 2017-08-11 14:25:33 -05:00
Jordan Henderson
1eb7758015 Add test for write parallel; read serial case 2017-08-11 14:09:51 -05:00
Jordan Henderson
f59bfd1754 Fix uninitialized array issue in test 2017-08-11 11:22:51 -05:00
Jordan Henderson
9714dc1124 Test updates 2017-08-10 15:30:06 -05:00
Jordan Henderson
1ce6691a72 Fix bug where incorrect amount of data was being read from the file 2017-08-10 14:12:01 -05:00
Jordan Henderson
6738d35d8a Add data verification for first half of tests 2017-08-09 21:21:49 -05:00
Jordan Henderson
f74dd2adae Start adding data verification 2017-08-08 15:04:53 -05:00